Evolution of prokaryotic homologues of the eukaryotic SEFIR protein domain

Gene

Volumn 492, Issue 1, 2012, Pages 160-166

  Wu, Baojun ^a   Gong, Jing ^a   Liu, Lanlan ^a   Li, Tianren ^a   Wei, Tiandi ^a   Bai, Zengliang ^a  

^a SHANDONG UNIVERSITY   (China)

Author keywords

Evolution; Lateral gene transfer; Pathogenic prokaryotes; SEFIR domain

Indexed keywords

ADAPTOR PROTEIN; BACTERIAL PROTEIN; HOMODIMER; INTERLEUKIN 1 RECEPTOR; INTERLEUKIN 17 RECEPTOR; PROTEIN SEFIR; STRESS ACTIVATED PROTEIN KINASE; TOLL LIKE RECEPTOR; UNCLASSIFIED DRUG;

ARTICLE; AUTOIMMUNITY; COMPLEX FORMATION; GENE EXPRESSION; GENETIC CODE; HORIZONTAL GENE TRANSFER; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ANIMALS; CLUSTER ANALYSIS; EUKARYOTA; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; PHYLOGENY; PROKARYOTIC CELLS; PROTEIN STRUCTURE, TERTIARY; RECEPTORS, INTERLEUKIN-17; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ANIMALIA; BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA; VERTEBRATA;

EID: 84155195140     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.10.033     Document Type: Article

References (45)

1. Akira S., Takeda K. Toll-like receptor signalling. Nat. Rev. Immunol. 2004, 4:499-511.
2. Bowie A., O'Neill L.A.J. The interleukin-1 receptor/Toll-like receptor superfamily: signal generators for pro-inflammatory interleukins and microbial products. J. Leukoc. Biol. 2000, 67:508-514.
3. Chan S.L., et al. Molecular mimicry in innate immunity: crystal structure of a bacterial TIR domain. J. Biol. Chem. 2009, 284:21386-21392.
4. Chang S.H., Park H., Dong C. Act1 adaptor protein is an immediate and essential signaling component of interleukin-17 receptor. J. Biol. Chem. 2006, 281:35603-35607.
5. Cirl C., et al. Subversion of Toll-like receptor signaling by a unique family of bacterial Toll/interleukin-1 receptor domain-containing proteins. Nat. Med. 2008, 14:399-406.
6. Emanuelsson O., Brunak S., von Heijne G., Nielsen H. Locating proteins in the cell using TargetP, SignalP and related tools. Nat. Protoc. 2007, 2:953-971.
7. Finn R.D., Clements J., Eddy S.R. HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011, 39:W29-W37.
8. Finn R.D., et al. The Pfam protein families database. Nucleic Acids Res. 2011, 38:D211-D222.
9. Frickey T., Lupas A. CLANS: a Java application for visualizing protein families based on pairwise similarity. Bioinformatics 2004, 20:3702-3704.
10. Gaffen S.L. Structure and signalling in the IL-17 receptor family. Nat. Rev. Immunol. 2009, 9:556-567.
11. Gay N.J., Keith F.J. Drosophila Toll and IL-1 receptor. Nature 1991, 351:355-356.
12. Gong J., et al. Inhibition of Toll-like receptors TLR4 and 7 signaling pathways by SIGIRR: a computational approach. J. Struct. Biol. 2010, 169:323-330.
13. Gunimaladevi I., Savan R., Sakai M. Identification, cloning and characterization of interleukin-17 and its family from zebrafish. Fish Shellfish Immunol. 2006, 21:393-403.
14. Ham H., Sreelatha A., Orth K. Manipulation of host membranes by bacterial effectors. Nat Rev Microbiol 2011, 9:635-646.
15. Humphrey, W., Dalke, A., Schulten, K. VMD: visual molecular dynamics. J. Mol. Graphics 14 (1996), pp. 33-8, 27-8.
16. Jiang Z., et al. Details of Toll-like receptor:adapter interaction revealed by germ-line mutagenesis. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:10961-10966.
17. Keestra A.M., et al. Early, MyD88-dependent induction of interleukin-17A expression during Salmonella colitis. Infect. Immun. 2011, 79:3131-3140.
18. Krogh A., Larsson B., von Heijne G., Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305:567-580.
19. Larkin M.A., et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
20. Lech M., et al. Lack of SIGIRR/TIR8 aggravates hydrocarbon oil-induced lupus nephritis. J. Pathol. 2010, 220:596-607.
21. Li C., Zienkiewicz J., Hawiger J. Interactive sites in the MyD88 Toll/interleukin (IL) 1 receptor domain responsible for coupling to the IL1beta signaling pathway. J. Biol. Chem. 2005, 280:26152-26159.
22. Li X. Act1 modulates autoimmunity through its dual functions in CD40L/BAFF and IL-17 signaling. Cytokine 2008, 41:105-113.
23. Mayuzumi H., Inagaki-Ohara K., Uyttenhove C., Okamoto Y., Matsuzaki G. Interleukin-17A is required to suppress invasion of Salmonella enterica serovar Typhimurium to enteric mucosa. Immunology 2010, 131:377-385.
24. Meyer-Bahlburg A., Rawlings D.J. B cell autonomous TLR signaling and autoimmunity. Autoimmun. Rev. 2008, 7:313-316.
25. Moussian B., Roth S. Dorsoventral axis formation in the Drosophila embryo-shaping and transducing a morphogen gradient. Curr. Biol. 2005, 15:R887-R899.
26. Narita K., Hu D.L., Mori F., Wakabayashi K., Iwakura Y., Nakane A. Role of interleukin-17A in cell-mediated protection against Staphylococcus aureus infection in mice immunized with the fibrinogen-binding domain of clumping factor A. Infect. Immun. 2010, 78:4234-4242.
27. Niebuhr M., et al. Staphylococcal alpha-toxin is a strong inducer of interleukin-17 in humans. Infect. Immun. 2011, 79:1615-1622.
28. Novatchkova M., Leibbrandt A., Werzowa J., Neubuser A., Eisenhaber F. The STIR-domain superfamily in signal transduction, development and immunity. Trends Biochem. Sci. 2003, 28:226-229.
29. Onishi R.M., Gaffen S.L. Interleukin-17 and its target genes: mechanisms of interleukin-17 function in disease. Immunology 2010, 129:311-321.
30. Puel A., et al. Chronic mucocutaneous candidiasis in humans with inborn errors of interleukin-17 immunity. Science 2011, 332:65-68.
31. Qian Y., et al. The adaptor Act1 is required for interleukin 17-dependent signaling associated with autoimmune and inflammatory disease. Nat. Immunol. 2007, 8:247-256.
32. Radons J., et al. The interleukin 1 (IL-1) receptor accessory protein Toll/IL-1 receptor domain: analysis of putative interaction sites in vitro mutagenesis and molecular modeling. J. Biol. Chem. 2003, 278:49145-49153.
33. Rajasekaran S., et al. Minimotif miner 2nd release: a database and web system for motif search. Nucleic Acids Res. 2009, 37:D185-D190.
34. Salcedo S.P., et al. Brucella control of dendritic cell maturation is dependent on the TIR-containing protein Btp1. PLoS Pathog. 2008, 4:e21.
35. Sayers E.W., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2009, 37:D5-D15.
36. Sonder S.U., Saret S., Tang W., Sturdevant D.E., Porcella S.F., Siebenlist U. IL-17-induced NF-{kappa}B activation via CIKS/Act1: physiologic significance and signaling mechanisms. J. Biol. Chem. 2011, 286:12881-12890.
37. Soundararajan V., Patel N., Subramanian V., Sasisekharan V., Sasisekharan R. The many faces of the YopM effector from plague causative bacterium Yersinia pestis and its implications for host immune modulation. Innate Immun 2010, 10.1177/1753425910377099.
38. Spear A.M., Loman N.J., Atkins H.S., Pallen M.J. Microbial TIR domains: not necessarily agents of subversion?. Trends Microbiol. 2009, 17:393-398.
39. Staal J., Dixelius C. Tracing the ancient origins of plant innate immunity. Trends Plant Sci. 2007, 12:334-342.
40. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
41. Wu B., Jin M., Gong J., Du X., Bai Z. Dynamic evolution of CIKS (TRAF3IP2/Act1) in metazoans. Dev. Comp. Immunol. 2011, 35:1186-1192.
42. Wu B., Jin M., Zhang Y., Wei T., Bai Z. Evolution of the IL17 receptor family in chordates: a new subfamily IL17REL. Immunogenetics 2011, 10.1007/s00251-011-0554-4.
43. Xiao T.S. Subversion of innate immune signaling through molecular mimicry. J. Clin. Immunol. 2010, 30:638-642.
44. Zhang Q., Zmasek C.M., Cai X., Godzik A. TIR domain-containing adaptor SARM is a late addition to the ongoing microbe-host dialog. Dev. Comp. Immunol. 2011, 35:461-468.
45. Zhang Y. I-TASSER: fully automated protein structure prediction in CASP8. Proteins 2009, 77(Suppl. 9):100-113.