-
1
-
-
0001475624
-
Protein folding: General physical model
-
Ptitsyn OB. Protein folding: General physical model. FEBS Lett 1981; 131(2): 197-202.
-
(1981)
FEBS Lett
, vol.131
, Issue.2
, pp. 197-202
-
-
Ptitsyn, O.B.1
-
2
-
-
0030002295
-
Native-like β-hairpin structure in an isolated fragment from ferredoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues
-
Searle MS, Zerella R, Dudley DH, Packman LC. Native-like β-hairpin structure in an isolated fragment from ferredoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues. Protein Eng 1996; 9(7): 559-565.
-
(1996)
Protein Eng
, vol.9
, Issue.7
, pp. 559-565
-
-
Searle, M.S.1
Zerella, R.2
Dudley, D.H.3
Packman, L.C.4
-
3
-
-
0028865129
-
A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin
-
Searle MS, Williams DH, Packman LC. A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin. Nat Struct Biol 1995; 2(11): 999-1006.
-
(1995)
Nat Struct Biol
, vol.2
, Issue.11
, pp. 999-1006
-
-
Searle, M.S.1
Williams, D.H.2
Packman, L.C.3
-
4
-
-
0032507251
-
Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of model peptide supports hydrophobic stabilization in water
-
Maynard AJ, Sharman GJ, Searle MS. Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of model peptide supports hydrophobic stabilization in water. J Am Chem Soc 1998; 120(9): 1996-2007.
-
(1998)
J Am Chem Soc
, vol.120
, Issue.9
, pp. 1996-2007
-
-
Maynard, A.J.1
Sharman, G.J.2
Searle, M.S.3
-
5
-
-
0041089466
-
Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding - Evidence for hairpins as initiation sites for β-sheet formation
-
Schonbrunner N, Pappenberger G, Scharf M, Engels J, Kiefhaber T. Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding - Evidence for hairpins as initiation sites for β-sheet formation. Biochemistry 1997; 36(29): 9057-9065.
-
(1997)
Biochemistry
, vol.36
, Issue.29
, pp. 9057-9065
-
-
Schonbrunner, N.1
Pappenberger, G.2
Scharf, M.3
Engels, J.4
Kiefhaber, T.5
-
6
-
-
0038502170
-
Folding dynamics and mechanism of β-hairpin formation
-
Munoz V, Thompson PA, Hofrichter J, Eaton WA. Folding dynamics and mechanism of β-hairpin formation. Nature 1997; 390(6656): 196-199.
-
(1997)
Nature
, vol.390
, Issue.6656
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
7
-
-
0542397796
-
Kinetics and dynamics of loops, α-helices, β-hairpins, and fast-folding proteins
-
Eaton WA, Munoz V, Thompson PA, Henry ER, Hofrichter J. Kinetics and dynamics of loops, α-helices, β-hairpins, and fast-folding proteins. Acc Chem Res 1998; 31(11): 745-753.
-
(1998)
Acc Chem Res
, vol.31
, Issue.11
, pp. 745-753
-
-
Eaton, W.A.1
Munoz, V.2
Thompson, P.A.3
Henry, E.R.4
Hofrichter, J.5
-
8
-
-
0032246263
-
Minimal model systems for β-sheet secondary structure in proteins
-
Gellman SH. Minimal model systems for β-sheet secondary structure in proteins. Curr Opin Struct Biol 1998; 2: 717-725.
-
(1998)
Curr Opin Struct Biol
, vol.2
, pp. 717-725
-
-
Gellman, S.H.1
-
9
-
-
0035834063
-
Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure
-
Stanger HE, Syud FA, Espinosa JF, Giriat I, Muir T, Gellman SH. Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure. Proc Natl Acad Sci USA 2001; 98(21): 12015-12020.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.21
, pp. 12015-12020
-
-
Stanger, H.E.1
Syud, F.A.2
Espinosa, J.F.3
Giriat, I.4
Muir, T.5
Gellman, S.H.6
-
10
-
-
0033572951
-
NMR-based quantification of β-sheet populations in aqueous solution through use of reference peptides for the folded and unfolded states
-
Syud FA, Espinosa JF, Gellman SH. NMR-based quantification of β-sheet populations in aqueous solution through use of reference peptides for the folded and unfolded states. J Am Chem Soc 1999; 121: 11577-11578.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 11577-11578
-
-
Syud, F.A.1
Espinosa, J.F.2
Gellman, S.H.3
-
12
-
-
0033871567
-
Critical role of β-hairpin formation in protein G folding
-
McCallister EL, Alm E, Baker D. Critical role of β-hairpin formation in protein G folding. Nat Struct Biol 2000; 7(8): 669-673.
-
(2000)
Nat Struct Biol
, vol.7
, Issue.8
, pp. 669-673
-
-
McCallister, E.L.1
Alm, E.2
Baker, D.3
-
13
-
-
0034598946
-
Molecular dynamics simulations of a β-hairpin fragment of protein G: balance between side-chain and backbone forces
-
Ma BY, Nussinov R. Molecular dynamics simulations of a β-hairpin fragment of protein G: balance between side-chain and backbone forces. J Mol Biol 2000; 296(4): 1091-1104.
-
(2000)
J Mol Biol
, vol.296
, Issue.4
, pp. 1091-1104
-
-
Ma, B.Y.1
Nussinov, R.2
-
14
-
-
0035826776
-
Tryptophan zippers: stable, monomeric β-hairpins
-
Cochran AG, Skelton NJ, Starovasnik MA. Tryptophan zippers: stable, monomeric β-hairpins. Proc Natl Acad Sci U S A 2001; 98(10): 5578-5583.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.10
, pp. 5578-5583
-
-
Cochran, A.G.1
Skelton, N.J.2
Starovasnik, M.A.3
-
15
-
-
0037077578
-
Selective aromatic interactions in β-hairpin peptides
-
Tatko C, Waters M. Selective aromatic interactions in β-hairpin peptides. J Am Chem Soc 2002; 124(32): 9372-9373.
-
(2002)
J Am Chem Soc
, vol.124
, Issue.32
, pp. 9372-9373
-
-
Tatko, C.1
Waters, M.2
-
16
-
-
33746608515
-
Model systems for β-hairpins and β-sheets
-
Hughes RM, Waters ML. Model systems for β-hairpins and β-sheets. Curr Opin Struct Biol 2006; 16: 514-524.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 514-524
-
-
Hughes, R.M.1
Waters, M.L.2
-
17
-
-
0038546798
-
Optical spectroscopic investigations of model β-sheet hairpins in aqueous solution
-
Hilario J, Kubelka J, Keiderling TA. Optical spectroscopic investigations of model β-sheet hairpins in aqueous solution. J Am Chem Soc 2003; 125(25): 7562-7574.
-
(2003)
J Am Chem Soc
, vol.125
, Issue.25
, pp. 7562-7574
-
-
Hilario, J.1
Kubelka, J.2
Keiderling, T.A.3
-
18
-
-
35948936905
-
Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy
-
Huang R, Setnicka V, Etienne MA, Kim J, Kubelka J, Hammer RP, Keiderling TA. Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy. J Am Chem Soc 2007; 129: 13592-13603.
-
(2007)
J Am Chem Soc
, vol.129
, pp. 13592-13603
-
-
Huang, R.1
Setnicka, V.2
Etienne, M.A.3
Kim, J.4
Kubelka, J.5
Hammer, R.P.6
Keiderling, T.A.7
-
19
-
-
66349126308
-
Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using 13C isotopic labeling and IR spectroscopy
-
Huang R, Wu L, McElheny D, Bour P, Roy A, Keiderling TA. Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using 13C isotopic labeling and IR spectroscopy. J Phys Chem B 2009; 113: 5661-5674.
-
(2009)
J Phys Chem B
, vol.113
, pp. 5661-5674
-
-
Huang, R.1
Wu, L.2
McElheny, D.3
Bour, P.4
Roy, A.5
Keiderling, T.A.6
-
20
-
-
70350495817
-
Role of Trp-Trp interactions in Trpzip β-hairpin formation, structure and stability
-
Wu L, McElheny D, Huang R, Keiderling TA. Role of Trp-Trp interactions in Trpzip β-hairpin formation, structure and stability. Biochemistry 2009; 48: 10362-10371.
-
(2009)
Biochemistry
, vol.48
, pp. 10362-10371
-
-
Wu, L.1
McElheny, D.2
Huang, R.3
Keiderling, T.A.4
-
21
-
-
77953104320
-
Geometry and efficacy of cross-strand Trp/Trp, Trp/Tyr and Tyr/Tyr aromatic interaction in a β-hairpin peptide
-
Wu L, McElheny D, Takekiyo T, Keiderling TA. Geometry and efficacy of cross-strand Trp/Trp, Trp/Tyr and Tyr/Tyr aromatic interaction in a β-hairpin peptide. Biochemistry 2010; 49(22): 4705-4714.
-
(2010)
Biochemistry
, vol.49
, Issue.22
, pp. 4705-4714
-
-
Wu, L.1
McElheny, D.2
Takekiyo, T.3
Keiderling, T.A.4
-
22
-
-
77649202326
-
Protein aggregation diseases: pathogenicity and therapeutic perspectives
-
Aguzzi A, Connor TO. Protein aggregation diseases: pathogenicity and therapeutic perspectives. Nat Rev Drug Dis 2010; 9: 237-248.
-
(2010)
Nat Rev Drug Dis
, vol.9
, pp. 237-248
-
-
Aguzzi, A.1
Connor, T.O.2
-
23
-
-
33746377894
-
Protein misfolding, functional amyloid, and human disease
-
Chiti F, Dobson CM. Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 2006; 75: 333-366.
-
(2006)
Annu Rev Biochem
, vol.75
, pp. 333-366
-
-
Chiti, F.1
Dobson, C.M.2
-
24
-
-
0033200063
-
Protein misfolding, evolution and disease
-
Dobson CM. Protein misfolding, evolution and disease. Trends Biochem Sci 1999; 24: 329-332.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 329-332
-
-
Dobson, C.M.1
-
25
-
-
0033977086
-
Amyloid fibrillogenesis: themes and variations
-
Rochet JC, Lansbury PT. Amyloid fibrillogenesis: themes and variations. Curr Opp Struct Biol 2000; 10: 60-68.
-
(2000)
Curr Opp Struct Biol
, vol.10
, pp. 60-68
-
-
Rochet, J.C.1
Lansbury, P.T.2
-
26
-
-
0037304420
-
Turn stability in β-hairpin peptides: investigation of peptides containing 3:5 type I G1 bulge turns
-
Blandl T, Cochran AG, Skelton NJ. Turn stability in β-hairpin peptides: investigation of peptides containing 3:5 type I G1 bulge turns. Protein Sci 2003; 12: 237-247.
-
(2003)
Protein Sci
, vol.12
, pp. 237-247
-
-
Blandl, T.1
Cochran, A.G.2
Skelton, N.J.3
-
27
-
-
0037438384
-
Stability of cyclic β-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair
-
Russell SJ, Blandl T, Skelton NJ, Cochran AG. Stability of cyclic β-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair. J Am Chem Soc 2003; 125: 388-395.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 388-395
-
-
Russell, S.J.1
Blandl, T.2
Skelton, N.J.3
Cochran, A.G.4
-
28
-
-
0035977632
-
A Minimal peptide scaffold for β-turn display: optimizing a strand position in disulfide-cyclized β-hairpins
-
n AG, Tong RT, Starovasnik MA, Park EJ, McDowell RS, Theaker JE, Skelton NJ. A Minimal peptide scaffold for β-turn display: optimizing a strand position in disulfide-cyclized β-hairpins. J Am Chem Soc 2001; 123: 625-632.
-
(2001)
J Am Chem Soc
, vol.123
, pp. 625-632
-
-
n, A.G.1
Tong, R.T.2
Starovasnik, M.A.3
Park, E.J.4
McDowell, R.S.5
Theaker, J.E.6
Skelton, N.J.7
-
29
-
-
0034694688
-
Designing stable β-hairpin: energetic contributions from cross-strand residues
-
Russell SJ, Cochran AG. Designing stable β-hairpin: energetic contributions from cross-strand residues. J Am Chem Soc 2000; 122: 12600-12601.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 12600-12601
-
-
Russell, S.J.1
Cochran, A.G.2
-
30
-
-
0034854541
-
Effects of turn residues in directing the formation of the beta-sheet and in the stability of the beta-sheet
-
Chen PY, Lin CK, Lee CT, Jan H, Chan SI. Effects of turn residues in directing the formation of the beta-sheet and in the stability of the beta-sheet. Protein Sci 2001; 10(9): 1794-1800.
-
(2001)
Protein Sci
, vol.10
, Issue.9
, pp. 1794-1800
-
-
Chen, P.Y.1
Lin, C.K.2
Lee, C.T.3
Jan, H.4
Chan, S.I.5
-
31
-
-
0032568537
-
A statistical mechanical model for β-hairpin kinetics
-
Munoz V, Henry ER, Hofrichter J, Eaton WA. A statistical mechanical model for β-hairpin kinetics. Proc Natl Acad Sci USA 1998; 95(11): 5872-5879.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, Issue.11
, pp. 5872-5879
-
-
Munoz, V.1
Henry, E.R.2
Hofrichter, J.3
Eaton, W.A.4
-
32
-
-
32344433535
-
β-Sheet folding mechanisms from pertubation energetics
-
Deechongkit S, Jager M, Nguyen H, Powers ET, Gruebele M, Kelly JW. β-Sheet folding mechanisms from pertubation energetics. Curr Opin Struct Biol 2006; 16: 94-101.
-
(2006)
Curr Opin Struct Biol
, vol.16
, pp. 94-101
-
-
Deechongkit, S.1
Jager, M.2
Nguyen, H.3
Powers, E.T.4
Gruebele, M.5
Kelly, J.W.6
-
33
-
-
0347130904
-
Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment
-
Yang WY, Pitera JW, Swope WC, Gruebele M. Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment. J Mol Biol 2004; 336(1): 241-251.
-
(2004)
J Mol Biol
, vol.336
, Issue.1
, pp. 241-251
-
-
Yang, W.Y.1
Pitera, J.W.2
Swope, W.C.3
Gruebele, M.4
-
34
-
-
3042848873
-
Context dependent contributions of backbone hydrogen bonding to β-sheet folding energetics
-
Deechongkit S, Nguyen H, Powers ET, Dawson PE, Gruebele M, Kelly JW. Context dependent contributions of backbone hydrogen bonding to β-sheet folding energetics. Nature 2004; 430: 101-105.
-
(2004)
Nature
, vol.430
, pp. 101-105
-
-
Deechongkit, S.1
Nguyen, H.2
Powers, E.T.3
Dawson, P.E.4
Gruebele, M.5
Kelly, J.W.6
-
35
-
-
41449088536
-
Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling
-
Hauser K, Krejtschi C, Huang R, Wu L, Keiderling TA. Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling. J Am Chem Soc 2008; 130: 2984-2992.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 2984-2992
-
-
Hauser, K.1
Krejtschi, C.2
Huang, R.3
Wu, L.4
Keiderling, T.A.5
-
36
-
-
77954000814
-
All-atom molecular dynamics (MD) simulations of β-hairpins stabilized by a tight turn; pronounced heterogeneous folding pathways
-
Kim J, Keiderling TA. All-atom molecular dynamics (MD) simulations of β-hairpins stabilized by a tight turn; pronounced heterogeneous folding pathways. J Phys Chem B 2010; 114: 8494-8504.
-
(2010)
J Phys Chem B
, vol.114
, pp. 8494-8504
-
-
Kim, J.1
Keiderling, T.A.2
-
37
-
-
0037131459
-
A crystalline β-hairpin peptide nucleated by a type I' Aib-D-Ala β-turn: evidence for cross-strand aromatic interactions
-
Aravinda S, Shamala N, Rajkishore R, Gopi HN, Balaram P. A crystalline β-hairpin peptide nucleated by a type I' Aib-D-Ala β-turn: evidence for cross-strand aromatic interactions. Angew Chem Int Ed 2002; 41(20): 3863-3865.
-
(2002)
Angew Chem Int Ed
, vol.41
, Issue.20
, pp. 3863-3865
-
-
Aravinda, S.1
Shamala, N.2
Rajkishore, R.3
Gopi, H.N.4
Balaram, P.5
-
38
-
-
0346837918
-
β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide
-
Ragothama SR, Awasthi SK, Balaram P. β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide. J Chem Soc, Perkin Trans 1998; 2: 137-143.
-
(1998)
J Chem Soc, Perkin Trans
, vol.2
, pp. 137-143
-
-
Ragothama, S.R.1
Awasthi, S.K.2
Balaram, P.3
-
39
-
-
0030992473
-
Insights on β-hairpin stability in aqueous solution from peptides with enforced type I' and type II' β-Turns
-
Haque TS, Gellman SH. Insights on β-hairpin stability in aqueous solution from peptides with enforced type I' and type II' β-Turns. J Am Chem Soc 1997; 119: 2303-2304.
-
(1997)
J Am Chem Soc
, vol.119
, pp. 2303-2304
-
-
Haque, T.S.1
Gellman, S.H.2
-
40
-
-
77952987207
-
TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues
-
Roy A, Bour P, Keiderling TA. TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues Chirality 2009; 21: 163-171.
-
(2009)
Chirality
, vol.21
, pp. 163-171
-
-
Roy, A.1
Bour, P.2
Keiderling, T.A.3
-
41
-
-
0036400325
-
Is polyproline II a major backbone conformation in unfolded proteins?
-
Shi Z, Woody RW, Kallenbach NR. Is polyproline II a major backbone conformation in unfolded proteins? Adv Protein Chem 2002; 62: 163-240.
-
(2002)
Adv Protein Chem
, vol.62
, pp. 163-240
-
-
Shi, Z.1
Woody, R.W.2
Kallenbach, N.R.3
-
42
-
-
0026355426
-
Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides
-
Dukor RK, Keiderling TA. Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides. Biopolymers 1991; 31: 1747-1761.
-
(1991)
Biopolymers
, vol.31
, pp. 1747-1761
-
-
Dukor, R.K.1
Keiderling, T.A.2
-
43
-
-
0014378447
-
Circular dichroism of poly-L-proline in an unordered conformation
-
Tiffany ML, Krimm S. Circular dichroism of poly-L-proline in an unordered conformation. Biopolymers 1968; 6: 1767-1770.
-
(1968)
Biopolymers
, vol.6
, pp. 1767-1770
-
-
Tiffany, M.L.1
Krimm, S.2
-
44
-
-
85130650550
-
Vibrational circular dichroism of biopolymers. Summary of methods and applications
-
Braiman M,Gregoriou V, editors..Atlanta: Taylor & Francis;
-
Keiderling TA, Kubelka J, Hilario J. Vibrational circular dichroism of biopolymers. Summary of methods and applications. In: Braiman M, Gregoriou V, editors. Vibrational spectroscopy of polymers and biological systems. Atlanta: Taylor & Francis; 2006. pp 253-324.
-
(2006)
Vibrational spectroscopy of polymers and biological systems
, pp. 253-324
-
-
Keiderling, T.A.1
Kubelka, J.2
Hilario, J.3
-
45
-
-
5644229529
-
Induced axial chirality in the biphenyl core for the Cα-tetrasubstituted α-amino acid residue Bip and subsequent propagation of chirality in (Bip)n/Val oligopeptides
-
Mazaleyrat J-P, Wright K, Gaucher A, Toulemonde M, Wakselman M, Oancea S, Peggion C, Formaggio F, Setnicka V, Keiderling TA, Toniolo C. Induced axial chirality in the biphenyl core for the Cα-tetrasubstituted α-amino acid residue Bip and subsequent propagation of chirality in (Bip)n/Val oligopeptides. J Am Chem Soc 2004; 126: 12874-12879.
-
(2004)
J Am Chem Soc
, vol.126
, pp. 12874-12879
-
-
Mazaleyrat, J.-P.1
Wright, K.2
Gaucher, A.3
Toulemonde, M.4
Wakselman, M.5
Oancea, S.6
Peggion, C.7
Formaggio, F.8
Setnicka, V.9
Keiderling, T.A.10
Toniolo, C.11
-
46
-
-
1542379588
-
Conformational studies of peptides with infrared techniques
-
Goodman M,Herrman G, editors..New York: Verlag;
-
Keiderling TA, Silva RAGD. Conformational studies of peptides with infrared techniques. In: Goodman M, Herrman G, editors. Synthesis of peptides and peptidomimetics. New York: Verlag; 2002. pp 715-738.
-
(2002)
Synthesis of peptides and peptidomimetics
, pp. 715-738
-
-
Keiderling, T.A.1
Silva, R.A.G.D.2
-
49
-
-
0024467352
-
Conformational transitions in poly(L-lysine) - Studies using Fourier transform infrared spectroscopy
-
Jackson M, Haris PI, Chapman D. Conformational transitions in poly(L-lysine) - Studies using Fourier transform infrared spectroscopy. Biochim Biophys Acta 1989; 998: 75-79.
-
(1989)
Biochim Biophys Acta
, vol.998
, pp. 75-79
-
-
Jackson, M.1
Haris, P.I.2
Chapman, D.3
-
50
-
-
0015904265
-
Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms
-
Chirgadze YN, Shetopalov BV, Venyaminov SY. Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms. Biopolymers 1973; 12: 1337-1351.
-
(1973)
Biopolymers
, vol.12
, pp. 1337-1351
-
-
Chirgadze, Y.N.1
Shetopalov, B.V.2
Venyaminov, S.Y.3
-
52
-
-
0035814332
-
Differentiation of β-sheet-forming structures: ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein beta-sheets
-
Kubelka J, Keiderling TA. Differentiation of β-sheet-forming structures: ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein beta-sheets. J Am Chem Soc 2001; 123(48): 12048-12058.
-
(2001)
J Am Chem Soc
, vol.123
, Issue.48
, pp. 12048-12058
-
-
Kubelka, J.1
Keiderling, T.A.2
-
53
-
-
0034655810
-
Simulations of oligopeptide vibrational circular dichroism. Effects of isotopic labeling
-
Bour P, Kubelka J, Keiderling TA. Simulations of oligopeptide vibrational circular dichroism. Effects of isotopic labeling. Biopolymers 2000; 53(5): 380-395.
-
(2000)
Biopolymers
, vol.53
, Issue.5
, pp. 380-395
-
-
Bour, P.1
Kubelka, J.2
Keiderling, T.A.3
-
54
-
-
1642570290
-
Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy
-
Snow CD, Qiu L, Du D, Gai F, Hagen SJ, Pande VS. Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proc Natl Acad Sci USA 2004; 101(12): 4077-4082.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.12
, pp. 4077-4082
-
-
Snow, C.D.1
Qiu, L.2
Du, D.3
Gai, F.4
Hagen, S.J.5
Pande, V.S.6
-
55
-
-
8644237364
-
Understanding the key factors that control the rate of β-hairpin folding
-
Du DG, Zhu YJ, Huang CY, Gai F. Understanding the key factors that control the rate of β-hairpin folding. Proc Natl Acad Sci USA 2004; 101: 15915-15920.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 15915-15920
-
-
Du, D.G.1
Zhu, Y.J.2
Huang, C.Y.3
Gai, F.4
-
56
-
-
61749093139
-
Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides
-
Takekiyo T, Wu L, Yoshimura Y, Shimizu A, Keiderling TA. Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides. Biochemistry 2009; 48: 1543-1552.
-
(2009)
Biochemistry
, vol.48
, pp. 1543-1552
-
-
Takekiyo, T.1
Wu, L.2
Yoshimura, Y.3
Shimizu, A.4
Keiderling, T.A.5
-
57
-
-
0036113724
-
Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet
-
Espinosa JF, Syud FA, Gellman SH. Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet. Protein Sci 2002; 11(6): 1492-1505.
-
(2002)
Protein Sci
, vol.11
, Issue.6
, pp. 1492-1505
-
-
Espinosa, J.F.1
Syud, F.A.2
Gellman, S.H.3
-
58
-
-
37549028734
-
Tight beta-turns in peptides - DFT-based study of Infrared absorption and vibrational circular dichroism for various conformers
-
Kim J, Kapitan J, Lakhani A, Bour P, Keiderling TA. Tight beta-turns in peptides - DFT-based study of Infrared absorption and vibrational circular dichroism for various conformers. Theor Chem Acc 2008; 119: 81-97.
-
(2008)
Theor Chem Acc
, vol.119
, pp. 81-97
-
-
Kim, J.1
Kapitan, J.2
Lakhani, A.3
Bour, P.4
Keiderling, T.A.5
-
59
-
-
85164052071
-
Magnetic Resonance in Chemistry
-
Xia
-
Xia.Magnetic Resonance in Chemistry 2005; 43: 372-379.
-
(2005)
, vol.43
, pp. 372-379
-
-
-
60
-
-
0029400480
-
NMRRipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A. NMRRipe: A multidimensional spectral processing system based on UNIX pipes. J Biomol NMR 1995; 6: 277-293.
-
(1995)
J Biomol NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
61
-
-
34249765651
-
NMR View: A computer program for the visualization and analysis of NMR data
-
Johnson BA, Blevins RA. NMR View: A computer program for the visualization and analysis of NMR data. J Biomol NMR 1994; 4: 604-613.
-
(1994)
J Biomol NMR
, vol.4
, pp. 604-613
-
-
Johnson, B.A.1
Blevins, R.A.2
-
62
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Guntert P, Mumenthaler C, Wuthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 1997; 273: 283-298.
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Guntert, P.1
Mumenthaler, C.2
Wuthrich, K.3
-
63
-
-
29444458401
-
Structural basis for cooperative transcription factor binding to the CBP coactivator
-
DeGuzman RN, Goto NK, Dyson HJ, Wright PE. Structural basis for cooperative transcription factor binding to the CBP coactivator. J Mol Biol 2006; 355: 1005-1013.
-
(2006)
J Mol Biol
, vol.355
, pp. 1005-1013
-
-
DeGuzman, R.N.1
Goto, N.K.2
Dyson, H.J.3
Wright, P.E.4
-
64
-
-
33748518255
-
Comparison of multiple Amber force fields and development of improved protein backbone parameters
-
Hornak V, Abel R, Okur A, Strockbine B, Roitberg A, Simmerling C. Comparison of multiple Amber force fields and development of improved protein backbone parameters. Proteins: Struct Funct Bioinform 2006; 65: 712-725.
-
(2006)
Proteins: Struct Funct Bioinform
, vol.65
, pp. 712-725
-
-
Hornak, V.1
Abel, R.2
Okur, A.3
Strockbine, B.4
Roitberg, A.5
Simmerling, C.6
-
65
-
-
0000865993
-
A new analysis of proton chemical shifts in proteins
-
Osapay K, Case DA. A new analysis of proton chemical shifts in proteins. J Am Chem Soc 1991; 113: 9436-9444.
-
(1991)
J Am Chem Soc
, vol.113
, pp. 9436-9444
-
-
Osapay, K.1
Case, D.A.2
-
66
-
-
0030339738
-
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR
-
Laskowski RA, Rullmann JAC, MacArthur MW, Kaptein R, Thornton JM. AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J Biomol NMR 1999; 8: 477-486.
-
(1999)
J Biomol NMR
, vol.8
, pp. 477-486
-
-
Laskowski, R.A.1
Rullmann, J.A.C.2
MacArthur, M.W.3
Kaptein, R.4
Thornton, J.M.5
-
67
-
-
33947476272
-
The factors affecting the stability of hydrogen-bonded polypeptide structures in solution
-
Schellman JA. The factors affecting the stability of hydrogen-bonded polypeptide structures in solution. J Phys Chem 1958; 62: 1485-1494.
-
(1958)
J Phys Chem
, vol.62
, pp. 1485-1494
-
-
Schellman, J.A.1
-
70
-
-
0034759469
-
A semiflexible polymer model applied to loop formation in DNA hairpins
-
Kuznetsov SV, Shen Y, Benight AS, Ansari A. A semiflexible polymer model applied to loop formation in DNA hairpins. Biophys J 2001; 81: 2864-2875.
-
(2001)
Biophys J
, vol.81
, pp. 2864-2875
-
-
Kuznetsov, S.V.1
Shen, Y.2
Benight, A.S.3
Ansari, A.4
-
71
-
-
77952987207
-
TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues
-
Roy A, Bour P, Keiderling TA. TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues. Chirality 2010; 21; E163-E171.
-
(2010)
Chirality
, vol.21
-
-
Roy, A.1
Bour, P.2
Keiderling, T.A.3
-
72
-
-
0001561813
-
Rules for antiparallel β-sheet design: D-Pro-Gly is superior to L-Asn-Gly for β-hairpin nucleation
-
Stanger HE, Gellman SH. Rules for antiparallel β-sheet design: D-Pro-Gly is superior to L-Asn-Gly for β-hairpin nucleation. J Am Chem Soc 1998; 120: 4236-4237.
-
(1998)
J Am Chem Soc
, vol.120
, pp. 4236-4237
-
-
Stanger, H.E.1
Gellman, S.H.2
-
74
-
-
77956329441
-
Isotopic substitution methods for equilibrium and T-jump studies of peptide conformation
-
Hauser K, Ridderbusch O, Roy A, KrejtschiC AH, Huang R, Keiderling TA. Isotopic substitution methods for equilibrium and T-jump studies of peptide conformation. J Phys Chem B 2010; 114: 11628-11637.
-
(2010)
J Phys Chem B
, vol.114
, pp. 11628-11637
-
-
Hauser, K.1
Ridderbusch, O.2
Roy, A.3
KrejtschiC, A.H.4
Huang, R.5
Keiderling, T.A.6
-
75
-
-
67449097467
-
Solvent friction changes the folding pathway of the tryptophan zipper TZ2
-
Narayanan R, Pelakh L, Hagen SJ. Solvent friction changes the folding pathway of the tryptophan zipper TZ2. J Mol Biol 2009; 390: 538-546.
-
(2009)
J Mol Biol
, vol.390
, pp. 538-546
-
-
Narayanan, R.1
Pelakh, L.2
Hagen, S.J.3
-
76
-
-
4143145167
-
10 Residue folded peptide designed by segment statistics
-
Honda S, Yamasaki K, Sawada Y, Morii H. 10 Residue folded peptide designed by segment statistics. Structure 2004; 12: 1507-1518.
-
(2004)
Structure
, vol.12
, pp. 1507-1518
-
-
Honda, S.1
Yamasaki, K.2
Sawada, Y.3
Morii, H.4
-
77
-
-
0032032120
-
Conformational interconversions in peptide β-turns: discrimination between enantiomeric conformations by chiral perturbation
-
Raghothama S, Chaddha M, Banumathi S, Ravikumar K, Velmurugan D, Balaram P. Conformational interconversions in peptide β-turns: discrimination between enantiomeric conformations by chiral perturbation. Biopolymers 1998; 45: 191-202.
-
(1998)
Biopolymers
, vol.45
, pp. 191-202
-
-
Raghothama, S.1
Chaddha, M.2
Banumathi, S.3
Ravikumar, K.4
Velmurugan, D.5
Balaram, P.6
-
78
-
-
34248383247
-
Tuning the β-turn segment in designed peptide β-hairpins: construction of a stable type i' β-turn nucleus and hairpin-helix transition promoting segments
-
Rai R, Raghothama S, Sridharan R, Balaram P. Tuning the β-turn segment in designed peptide β-hairpins: construction of a stable type i' β-turn nucleus and hairpin-helix transition promoting segments. Biopolymers 2007; 88: 350-361.
-
(2007)
Biopolymers
, vol.88
, pp. 350-361
-
-
Rai, R.1
Raghothama, S.2
Sridharan, R.3
Balaram, P.4
-
79
-
-
0029843132
-
Hydrogen bonding stabilizes globular proteins
-
Myers JK, Pace CN. Hydrogen bonding stabilizes globular proteins. Biophys J 1996; 71(4): 2033-2039.
-
(1996)
Biophys J
, vol.71
, Issue.4
, pp. 2033-2039
-
-
Myers, J.K.1
Pace, C.N.2
|