메뉴 건너뛰기




Volumn 80, Issue 1, 2012, Pages 44-60

Role of different β-turns in β-hairpin conformation and stability studied by optical spectroscopy

Author keywords

turn; DPro Gly; Hairpin peptide; NMR peptide structure; Thermodynamic folding analysis; Tryptophan

Indexed keywords

PROTEIN; PROTEIN BETA HAIRPIN; TRYPTOPHAN; UNCLASSIFIED DRUG;

EID: 83555176386     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.23140     Document Type: Article
Times cited : (34)

References (79)
  • 1
    • 0001475624 scopus 로고
    • Protein folding: General physical model
    • Ptitsyn OB. Protein folding: General physical model. FEBS Lett 1981; 131(2): 197-202.
    • (1981) FEBS Lett , vol.131 , Issue.2 , pp. 197-202
    • Ptitsyn, O.B.1
  • 2
    • 0030002295 scopus 로고    scopus 로고
    • Native-like β-hairpin structure in an isolated fragment from ferredoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues
    • Searle MS, Zerella R, Dudley DH, Packman LC. Native-like β-hairpin structure in an isolated fragment from ferredoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues. Protein Eng 1996; 9(7): 559-565.
    • (1996) Protein Eng , vol.9 , Issue.7 , pp. 559-565
    • Searle, M.S.1    Zerella, R.2    Dudley, D.H.3    Packman, L.C.4
  • 3
    • 0028865129 scopus 로고
    • A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin
    • Searle MS, Williams DH, Packman LC. A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water-stable non-native β-hairpin. Nat Struct Biol 1995; 2(11): 999-1006.
    • (1995) Nat Struct Biol , vol.2 , Issue.11 , pp. 999-1006
    • Searle, M.S.1    Williams, D.H.2    Packman, L.C.3
  • 4
    • 0032507251 scopus 로고    scopus 로고
    • Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of model peptide supports hydrophobic stabilization in water
    • Maynard AJ, Sharman GJ, Searle MS. Origin of β-hairpin stability in solution: structural and thermodynamic analysis of the folding of model peptide supports hydrophobic stabilization in water. J Am Chem Soc 1998; 120(9): 1996-2007.
    • (1998) J Am Chem Soc , vol.120 , Issue.9 , pp. 1996-2007
    • Maynard, A.J.1    Sharman, G.J.2    Searle, M.S.3
  • 5
    • 0041089466 scopus 로고    scopus 로고
    • Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding - Evidence for hairpins as initiation sites for β-sheet formation
    • Schonbrunner N, Pappenberger G, Scharf M, Engels J, Kiefhaber T. Effect of preformed correct tertiary interactions on rapid two-state tendamistat folding - Evidence for hairpins as initiation sites for β-sheet formation. Biochemistry 1997; 36(29): 9057-9065.
    • (1997) Biochemistry , vol.36 , Issue.29 , pp. 9057-9065
    • Schonbrunner, N.1    Pappenberger, G.2    Scharf, M.3    Engels, J.4    Kiefhaber, T.5
  • 6
    • 0038502170 scopus 로고    scopus 로고
    • Folding dynamics and mechanism of β-hairpin formation
    • Munoz V, Thompson PA, Hofrichter J, Eaton WA. Folding dynamics and mechanism of β-hairpin formation. Nature 1997; 390(6656): 196-199.
    • (1997) Nature , vol.390 , Issue.6656 , pp. 196-199
    • Munoz, V.1    Thompson, P.A.2    Hofrichter, J.3    Eaton, W.A.4
  • 7
    • 0542397796 scopus 로고    scopus 로고
    • Kinetics and dynamics of loops, α-helices, β-hairpins, and fast-folding proteins
    • Eaton WA, Munoz V, Thompson PA, Henry ER, Hofrichter J. Kinetics and dynamics of loops, α-helices, β-hairpins, and fast-folding proteins. Acc Chem Res 1998; 31(11): 745-753.
    • (1998) Acc Chem Res , vol.31 , Issue.11 , pp. 745-753
    • Eaton, W.A.1    Munoz, V.2    Thompson, P.A.3    Henry, E.R.4    Hofrichter, J.5
  • 8
    • 0032246263 scopus 로고    scopus 로고
    • Minimal model systems for β-sheet secondary structure in proteins
    • Gellman SH. Minimal model systems for β-sheet secondary structure in proteins. Curr Opin Struct Biol 1998; 2: 717-725.
    • (1998) Curr Opin Struct Biol , vol.2 , pp. 717-725
    • Gellman, S.H.1
  • 9
    • 0035834063 scopus 로고    scopus 로고
    • Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure
    • Stanger HE, Syud FA, Espinosa JF, Giriat I, Muir T, Gellman SH. Length-dependent stability and strand length limits in antiparallel β-sheet secondary structure. Proc Natl Acad Sci USA 2001; 98(21): 12015-12020.
    • (2001) Proc Natl Acad Sci USA , vol.98 , Issue.21 , pp. 12015-12020
    • Stanger, H.E.1    Syud, F.A.2    Espinosa, J.F.3    Giriat, I.4    Muir, T.5    Gellman, S.H.6
  • 10
    • 0033572951 scopus 로고    scopus 로고
    • NMR-based quantification of β-sheet populations in aqueous solution through use of reference peptides for the folded and unfolded states
    • Syud FA, Espinosa JF, Gellman SH. NMR-based quantification of β-sheet populations in aqueous solution through use of reference peptides for the folded and unfolded states. J Am Chem Soc 1999; 121: 11577-11578.
    • (1999) J Am Chem Soc , vol.121 , pp. 11577-11578
    • Syud, F.A.1    Espinosa, J.F.2    Gellman, S.H.3
  • 12
    • 0033871567 scopus 로고    scopus 로고
    • Critical role of β-hairpin formation in protein G folding
    • McCallister EL, Alm E, Baker D. Critical role of β-hairpin formation in protein G folding. Nat Struct Biol 2000; 7(8): 669-673.
    • (2000) Nat Struct Biol , vol.7 , Issue.8 , pp. 669-673
    • McCallister, E.L.1    Alm, E.2    Baker, D.3
  • 13
    • 0034598946 scopus 로고    scopus 로고
    • Molecular dynamics simulations of a β-hairpin fragment of protein G: balance between side-chain and backbone forces
    • Ma BY, Nussinov R. Molecular dynamics simulations of a β-hairpin fragment of protein G: balance between side-chain and backbone forces. J Mol Biol 2000; 296(4): 1091-1104.
    • (2000) J Mol Biol , vol.296 , Issue.4 , pp. 1091-1104
    • Ma, B.Y.1    Nussinov, R.2
  • 15
    • 0037077578 scopus 로고    scopus 로고
    • Selective aromatic interactions in β-hairpin peptides
    • Tatko C, Waters M. Selective aromatic interactions in β-hairpin peptides. J Am Chem Soc 2002; 124(32): 9372-9373.
    • (2002) J Am Chem Soc , vol.124 , Issue.32 , pp. 9372-9373
    • Tatko, C.1    Waters, M.2
  • 16
    • 33746608515 scopus 로고    scopus 로고
    • Model systems for β-hairpins and β-sheets
    • Hughes RM, Waters ML. Model systems for β-hairpins and β-sheets. Curr Opin Struct Biol 2006; 16: 514-524.
    • (2006) Curr Opin Struct Biol , vol.16 , pp. 514-524
    • Hughes, R.M.1    Waters, M.L.2
  • 17
    • 0038546798 scopus 로고    scopus 로고
    • Optical spectroscopic investigations of model β-sheet hairpins in aqueous solution
    • Hilario J, Kubelka J, Keiderling TA. Optical spectroscopic investigations of model β-sheet hairpins in aqueous solution. J Am Chem Soc 2003; 125(25): 7562-7574.
    • (2003) J Am Chem Soc , vol.125 , Issue.25 , pp. 7562-7574
    • Hilario, J.1    Kubelka, J.2    Keiderling, T.A.3
  • 18
    • 35948936905 scopus 로고    scopus 로고
    • Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy
    • Huang R, Setnicka V, Etienne MA, Kim J, Kubelka J, Hammer RP, Keiderling TA. Cross-strand coupling of a β-hairpin peptide stabilized with an Aib-Gly turn studied using isotope-edited IR spectroscopy. J Am Chem Soc 2007; 129: 13592-13603.
    • (2007) J Am Chem Soc , vol.129 , pp. 13592-13603
    • Huang, R.1    Setnicka, V.2    Etienne, M.A.3    Kim, J.4    Kubelka, J.5    Hammer, R.P.6    Keiderling, T.A.7
  • 19
    • 66349126308 scopus 로고    scopus 로고
    • Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using 13C isotopic labeling and IR spectroscopy
    • Huang R, Wu L, McElheny D, Bour P, Roy A, Keiderling TA. Cross-strand coupling and site-specific unfolding thermodynamics of a trpzip β-hairpin peptide using 13C isotopic labeling and IR spectroscopy. J Phys Chem B 2009; 113: 5661-5674.
    • (2009) J Phys Chem B , vol.113 , pp. 5661-5674
    • Huang, R.1    Wu, L.2    McElheny, D.3    Bour, P.4    Roy, A.5    Keiderling, T.A.6
  • 20
    • 70350495817 scopus 로고    scopus 로고
    • Role of Trp-Trp interactions in Trpzip β-hairpin formation, structure and stability
    • Wu L, McElheny D, Huang R, Keiderling TA. Role of Trp-Trp interactions in Trpzip β-hairpin formation, structure and stability. Biochemistry 2009; 48: 10362-10371.
    • (2009) Biochemistry , vol.48 , pp. 10362-10371
    • Wu, L.1    McElheny, D.2    Huang, R.3    Keiderling, T.A.4
  • 21
    • 77953104320 scopus 로고    scopus 로고
    • Geometry and efficacy of cross-strand Trp/Trp, Trp/Tyr and Tyr/Tyr aromatic interaction in a β-hairpin peptide
    • Wu L, McElheny D, Takekiyo T, Keiderling TA. Geometry and efficacy of cross-strand Trp/Trp, Trp/Tyr and Tyr/Tyr aromatic interaction in a β-hairpin peptide. Biochemistry 2010; 49(22): 4705-4714.
    • (2010) Biochemistry , vol.49 , Issue.22 , pp. 4705-4714
    • Wu, L.1    McElheny, D.2    Takekiyo, T.3    Keiderling, T.A.4
  • 22
    • 77649202326 scopus 로고    scopus 로고
    • Protein aggregation diseases: pathogenicity and therapeutic perspectives
    • Aguzzi A, Connor TO. Protein aggregation diseases: pathogenicity and therapeutic perspectives. Nat Rev Drug Dis 2010; 9: 237-248.
    • (2010) Nat Rev Drug Dis , vol.9 , pp. 237-248
    • Aguzzi, A.1    Connor, T.O.2
  • 23
    • 33746377894 scopus 로고    scopus 로고
    • Protein misfolding, functional amyloid, and human disease
    • Chiti F, Dobson CM. Protein misfolding, functional amyloid, and human disease. Annu Rev Biochem 2006; 75: 333-366.
    • (2006) Annu Rev Biochem , vol.75 , pp. 333-366
    • Chiti, F.1    Dobson, C.M.2
  • 24
    • 0033200063 scopus 로고    scopus 로고
    • Protein misfolding, evolution and disease
    • Dobson CM. Protein misfolding, evolution and disease. Trends Biochem Sci 1999; 24: 329-332.
    • (1999) Trends Biochem Sci , vol.24 , pp. 329-332
    • Dobson, C.M.1
  • 25
    • 0033977086 scopus 로고    scopus 로고
    • Amyloid fibrillogenesis: themes and variations
    • Rochet JC, Lansbury PT. Amyloid fibrillogenesis: themes and variations. Curr Opp Struct Biol 2000; 10: 60-68.
    • (2000) Curr Opp Struct Biol , vol.10 , pp. 60-68
    • Rochet, J.C.1    Lansbury, P.T.2
  • 26
    • 0037304420 scopus 로고    scopus 로고
    • Turn stability in β-hairpin peptides: investigation of peptides containing 3:5 type I G1 bulge turns
    • Blandl T, Cochran AG, Skelton NJ. Turn stability in β-hairpin peptides: investigation of peptides containing 3:5 type I G1 bulge turns. Protein Sci 2003; 12: 237-247.
    • (2003) Protein Sci , vol.12 , pp. 237-247
    • Blandl, T.1    Cochran, A.G.2    Skelton, N.J.3
  • 27
    • 0037438384 scopus 로고    scopus 로고
    • Stability of cyclic β-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair
    • Russell SJ, Blandl T, Skelton NJ, Cochran AG. Stability of cyclic β-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair. J Am Chem Soc 2003; 125: 388-395.
    • (2003) J Am Chem Soc , vol.125 , pp. 388-395
    • Russell, S.J.1    Blandl, T.2    Skelton, N.J.3    Cochran, A.G.4
  • 29
    • 0034694688 scopus 로고    scopus 로고
    • Designing stable β-hairpin: energetic contributions from cross-strand residues
    • Russell SJ, Cochran AG. Designing stable β-hairpin: energetic contributions from cross-strand residues. J Am Chem Soc 2000; 122: 12600-12601.
    • (2000) J Am Chem Soc , vol.122 , pp. 12600-12601
    • Russell, S.J.1    Cochran, A.G.2
  • 30
    • 0034854541 scopus 로고    scopus 로고
    • Effects of turn residues in directing the formation of the beta-sheet and in the stability of the beta-sheet
    • Chen PY, Lin CK, Lee CT, Jan H, Chan SI. Effects of turn residues in directing the formation of the beta-sheet and in the stability of the beta-sheet. Protein Sci 2001; 10(9): 1794-1800.
    • (2001) Protein Sci , vol.10 , Issue.9 , pp. 1794-1800
    • Chen, P.Y.1    Lin, C.K.2    Lee, C.T.3    Jan, H.4    Chan, S.I.5
  • 33
    • 0347130904 scopus 로고    scopus 로고
    • Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment
    • Yang WY, Pitera JW, Swope WC, Gruebele M. Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment. J Mol Biol 2004; 336(1): 241-251.
    • (2004) J Mol Biol , vol.336 , Issue.1 , pp. 241-251
    • Yang, W.Y.1    Pitera, J.W.2    Swope, W.C.3    Gruebele, M.4
  • 34
    • 3042848873 scopus 로고    scopus 로고
    • Context dependent contributions of backbone hydrogen bonding to β-sheet folding energetics
    • Deechongkit S, Nguyen H, Powers ET, Dawson PE, Gruebele M, Kelly JW. Context dependent contributions of backbone hydrogen bonding to β-sheet folding energetics. Nature 2004; 430: 101-105.
    • (2004) Nature , vol.430 , pp. 101-105
    • Deechongkit, S.1    Nguyen, H.2    Powers, E.T.3    Dawson, P.E.4    Gruebele, M.5    Kelly, J.W.6
  • 35
    • 41449088536 scopus 로고    scopus 로고
    • Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling
    • Hauser K, Krejtschi C, Huang R, Wu L, Keiderling TA. Site-specific relaxation kinetics of a tryptophan zipper hairpin peptide using temperature-jump IR spectroscopy and isotopic labeling. J Am Chem Soc 2008; 130: 2984-2992.
    • (2008) J Am Chem Soc , vol.130 , pp. 2984-2992
    • Hauser, K.1    Krejtschi, C.2    Huang, R.3    Wu, L.4    Keiderling, T.A.5
  • 36
    • 77954000814 scopus 로고    scopus 로고
    • All-atom molecular dynamics (MD) simulations of β-hairpins stabilized by a tight turn; pronounced heterogeneous folding pathways
    • Kim J, Keiderling TA. All-atom molecular dynamics (MD) simulations of β-hairpins stabilized by a tight turn; pronounced heterogeneous folding pathways. J Phys Chem B 2010; 114: 8494-8504.
    • (2010) J Phys Chem B , vol.114 , pp. 8494-8504
    • Kim, J.1    Keiderling, T.A.2
  • 37
    • 0037131459 scopus 로고    scopus 로고
    • A crystalline β-hairpin peptide nucleated by a type I' Aib-D-Ala β-turn: evidence for cross-strand aromatic interactions
    • Aravinda S, Shamala N, Rajkishore R, Gopi HN, Balaram P. A crystalline β-hairpin peptide nucleated by a type I' Aib-D-Ala β-turn: evidence for cross-strand aromatic interactions. Angew Chem Int Ed 2002; 41(20): 3863-3865.
    • (2002) Angew Chem Int Ed , vol.41 , Issue.20 , pp. 3863-3865
    • Aravinda, S.1    Shamala, N.2    Rajkishore, R.3    Gopi, H.N.4    Balaram, P.5
  • 38
    • 0346837918 scopus 로고    scopus 로고
    • β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide
    • Ragothama SR, Awasthi SK, Balaram P. β-Hairpin nucleation by Pro-Gly β-turns. Comparison of D-Pro-Gly and L-Pro-Gly sequences in an apolar octapeptide. J Chem Soc, Perkin Trans 1998; 2: 137-143.
    • (1998) J Chem Soc, Perkin Trans , vol.2 , pp. 137-143
    • Ragothama, S.R.1    Awasthi, S.K.2    Balaram, P.3
  • 39
    • 0030992473 scopus 로고    scopus 로고
    • Insights on β-hairpin stability in aqueous solution from peptides with enforced type I' and type II' β-Turns
    • Haque TS, Gellman SH. Insights on β-hairpin stability in aqueous solution from peptides with enforced type I' and type II' β-Turns. J Am Chem Soc 1997; 119: 2303-2304.
    • (1997) J Am Chem Soc , vol.119 , pp. 2303-2304
    • Haque, T.S.1    Gellman, S.H.2
  • 40
    • 77952987207 scopus 로고    scopus 로고
    • TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues
    • Roy A, Bour P, Keiderling TA. TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues Chirality 2009; 21: 163-171.
    • (2009) Chirality , vol.21 , pp. 163-171
    • Roy, A.1    Bour, P.2    Keiderling, T.A.3
  • 41
    • 0036400325 scopus 로고    scopus 로고
    • Is polyproline II a major backbone conformation in unfolded proteins?
    • Shi Z, Woody RW, Kallenbach NR. Is polyproline II a major backbone conformation in unfolded proteins? Adv Protein Chem 2002; 62: 163-240.
    • (2002) Adv Protein Chem , vol.62 , pp. 163-240
    • Shi, Z.1    Woody, R.W.2    Kallenbach, N.R.3
  • 42
    • 0026355426 scopus 로고
    • Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides
    • Dukor RK, Keiderling TA. Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides. Biopolymers 1991; 31: 1747-1761.
    • (1991) Biopolymers , vol.31 , pp. 1747-1761
    • Dukor, R.K.1    Keiderling, T.A.2
  • 43
    • 0014378447 scopus 로고
    • Circular dichroism of poly-L-proline in an unordered conformation
    • Tiffany ML, Krimm S. Circular dichroism of poly-L-proline in an unordered conformation. Biopolymers 1968; 6: 1767-1770.
    • (1968) Biopolymers , vol.6 , pp. 1767-1770
    • Tiffany, M.L.1    Krimm, S.2
  • 44
    • 85130650550 scopus 로고    scopus 로고
    • Vibrational circular dichroism of biopolymers. Summary of methods and applications
    • Braiman M,Gregoriou V, editors..Atlanta: Taylor & Francis;
    • Keiderling TA, Kubelka J, Hilario J. Vibrational circular dichroism of biopolymers. Summary of methods and applications. In: Braiman M, Gregoriou V, editors. Vibrational spectroscopy of polymers and biological systems. Atlanta: Taylor & Francis; 2006. pp 253-324.
    • (2006) Vibrational spectroscopy of polymers and biological systems , pp. 253-324
    • Keiderling, T.A.1    Kubelka, J.2    Hilario, J.3
  • 46
    • 1542379588 scopus 로고    scopus 로고
    • Conformational studies of peptides with infrared techniques
    • Goodman M,Herrman G, editors..New York: Verlag;
    • Keiderling TA, Silva RAGD. Conformational studies of peptides with infrared techniques. In: Goodman M, Herrman G, editors. Synthesis of peptides and peptidomimetics. New York: Verlag; 2002. pp 715-738.
    • (2002) Synthesis of peptides and peptidomimetics , pp. 715-738
    • Keiderling, T.A.1    Silva, R.A.G.D.2
  • 49
    • 0024467352 scopus 로고
    • Conformational transitions in poly(L-lysine) - Studies using Fourier transform infrared spectroscopy
    • Jackson M, Haris PI, Chapman D. Conformational transitions in poly(L-lysine) - Studies using Fourier transform infrared spectroscopy. Biochim Biophys Acta 1989; 998: 75-79.
    • (1989) Biochim Biophys Acta , vol.998 , pp. 75-79
    • Jackson, M.1    Haris, P.I.2    Chapman, D.3
  • 50
    • 0015904265 scopus 로고
    • Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms
    • Chirgadze YN, Shetopalov BV, Venyaminov SY. Intensities and other spectral parameters of infrared amide bands of polypeptides in the beta and random forms. Biopolymers 1973; 12: 1337-1351.
    • (1973) Biopolymers , vol.12 , pp. 1337-1351
    • Chirgadze, Y.N.1    Shetopalov, B.V.2    Venyaminov, S.Y.3
  • 52
    • 0035814332 scopus 로고    scopus 로고
    • Differentiation of β-sheet-forming structures: ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein beta-sheets
    • Kubelka J, Keiderling TA. Differentiation of β-sheet-forming structures: ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein beta-sheets. J Am Chem Soc 2001; 123(48): 12048-12058.
    • (2001) J Am Chem Soc , vol.123 , Issue.48 , pp. 12048-12058
    • Kubelka, J.1    Keiderling, T.A.2
  • 53
    • 0034655810 scopus 로고    scopus 로고
    • Simulations of oligopeptide vibrational circular dichroism. Effects of isotopic labeling
    • Bour P, Kubelka J, Keiderling TA. Simulations of oligopeptide vibrational circular dichroism. Effects of isotopic labeling. Biopolymers 2000; 53(5): 380-395.
    • (2000) Biopolymers , vol.53 , Issue.5 , pp. 380-395
    • Bour, P.1    Kubelka, J.2    Keiderling, T.A.3
  • 54
    • 1642570290 scopus 로고    scopus 로고
    • Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy
    • Snow CD, Qiu L, Du D, Gai F, Hagen SJ, Pande VS. Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy. Proc Natl Acad Sci USA 2004; 101(12): 4077-4082.
    • (2004) Proc Natl Acad Sci USA , vol.101 , Issue.12 , pp. 4077-4082
    • Snow, C.D.1    Qiu, L.2    Du, D.3    Gai, F.4    Hagen, S.J.5    Pande, V.S.6
  • 55
    • 8644237364 scopus 로고    scopus 로고
    • Understanding the key factors that control the rate of β-hairpin folding
    • Du DG, Zhu YJ, Huang CY, Gai F. Understanding the key factors that control the rate of β-hairpin folding. Proc Natl Acad Sci USA 2004; 101: 15915-15920.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15915-15920
    • Du, D.G.1    Zhu, Y.J.2    Huang, C.Y.3    Gai, F.4
  • 56
    • 61749093139 scopus 로고    scopus 로고
    • Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides
    • Takekiyo T, Wu L, Yoshimura Y, Shimizu A, Keiderling TA. Relationship between hydrophobic interactions and secondary structure stability for trpzip β-hairpin peptides. Biochemistry 2009; 48: 1543-1552.
    • (2009) Biochemistry , vol.48 , pp. 1543-1552
    • Takekiyo, T.1    Wu, L.2    Yoshimura, Y.3    Shimizu, A.4    Keiderling, T.A.5
  • 57
    • 0036113724 scopus 로고    scopus 로고
    • Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet
    • Espinosa JF, Syud FA, Gellman SH. Analysis of the factors that stabilize a designed two-stranded antiparallel β-sheet. Protein Sci 2002; 11(6): 1492-1505.
    • (2002) Protein Sci , vol.11 , Issue.6 , pp. 1492-1505
    • Espinosa, J.F.1    Syud, F.A.2    Gellman, S.H.3
  • 58
    • 37549028734 scopus 로고    scopus 로고
    • Tight beta-turns in peptides - DFT-based study of Infrared absorption and vibrational circular dichroism for various conformers
    • Kim J, Kapitan J, Lakhani A, Bour P, Keiderling TA. Tight beta-turns in peptides - DFT-based study of Infrared absorption and vibrational circular dichroism for various conformers. Theor Chem Acc 2008; 119: 81-97.
    • (2008) Theor Chem Acc , vol.119 , pp. 81-97
    • Kim, J.1    Kapitan, J.2    Lakhani, A.3    Bour, P.4    Keiderling, T.A.5
  • 59
    • 85164052071 scopus 로고    scopus 로고
    • Magnetic Resonance in Chemistry
    • Xia
    • Xia.Magnetic Resonance in Chemistry 2005; 43: 372-379.
    • (2005) , vol.43 , pp. 372-379
  • 61
    • 34249765651 scopus 로고
    • NMR View: A computer program for the visualization and analysis of NMR data
    • Johnson BA, Blevins RA. NMR View: A computer program for the visualization and analysis of NMR data. J Biomol NMR 1994; 4: 604-613.
    • (1994) J Biomol NMR , vol.4 , pp. 604-613
    • Johnson, B.A.1    Blevins, R.A.2
  • 62
    • 0031576336 scopus 로고    scopus 로고
    • Torsion angle dynamics for NMR structure calculation with the new program DYANA
    • Guntert P, Mumenthaler C, Wuthrich K. Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 1997; 273: 283-298.
    • (1997) J Mol Biol , vol.273 , pp. 283-298
    • Guntert, P.1    Mumenthaler, C.2    Wuthrich, K.3
  • 63
    • 29444458401 scopus 로고    scopus 로고
    • Structural basis for cooperative transcription factor binding to the CBP coactivator
    • DeGuzman RN, Goto NK, Dyson HJ, Wright PE. Structural basis for cooperative transcription factor binding to the CBP coactivator. J Mol Biol 2006; 355: 1005-1013.
    • (2006) J Mol Biol , vol.355 , pp. 1005-1013
    • DeGuzman, R.N.1    Goto, N.K.2    Dyson, H.J.3    Wright, P.E.4
  • 65
    • 0000865993 scopus 로고
    • A new analysis of proton chemical shifts in proteins
    • Osapay K, Case DA. A new analysis of proton chemical shifts in proteins. J Am Chem Soc 1991; 113: 9436-9444.
    • (1991) J Am Chem Soc , vol.113 , pp. 9436-9444
    • Osapay, K.1    Case, D.A.2
  • 67
    • 33947476272 scopus 로고
    • The factors affecting the stability of hydrogen-bonded polypeptide structures in solution
    • Schellman JA. The factors affecting the stability of hydrogen-bonded polypeptide structures in solution. J Phys Chem 1958; 62: 1485-1494.
    • (1958) J Phys Chem , vol.62 , pp. 1485-1494
    • Schellman, J.A.1
  • 70
    • 0034759469 scopus 로고    scopus 로고
    • A semiflexible polymer model applied to loop formation in DNA hairpins
    • Kuznetsov SV, Shen Y, Benight AS, Ansari A. A semiflexible polymer model applied to loop formation in DNA hairpins. Biophys J 2001; 81: 2864-2875.
    • (2001) Biophys J , vol.81 , pp. 2864-2875
    • Kuznetsov, S.V.1    Shen, Y.2    Benight, A.S.3    Ansari, A.4
  • 71
    • 77952987207 scopus 로고    scopus 로고
    • TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues
    • Roy A, Bour P, Keiderling TA. TD-DFT modeling of the circular dichroism for a tryptohan zipper peptide with coupled aromatic residues. Chirality 2010; 21; E163-E171.
    • (2010) Chirality , vol.21
    • Roy, A.1    Bour, P.2    Keiderling, T.A.3
  • 72
    • 0001561813 scopus 로고    scopus 로고
    • Rules for antiparallel β-sheet design: D-Pro-Gly is superior to L-Asn-Gly for β-hairpin nucleation
    • Stanger HE, Gellman SH. Rules for antiparallel β-sheet design: D-Pro-Gly is superior to L-Asn-Gly for β-hairpin nucleation. J Am Chem Soc 1998; 120: 4236-4237.
    • (1998) J Am Chem Soc , vol.120 , pp. 4236-4237
    • Stanger, H.E.1    Gellman, S.H.2
  • 75
    • 67449097467 scopus 로고    scopus 로고
    • Solvent friction changes the folding pathway of the tryptophan zipper TZ2
    • Narayanan R, Pelakh L, Hagen SJ. Solvent friction changes the folding pathway of the tryptophan zipper TZ2. J Mol Biol 2009; 390: 538-546.
    • (2009) J Mol Biol , vol.390 , pp. 538-546
    • Narayanan, R.1    Pelakh, L.2    Hagen, S.J.3
  • 76
    • 4143145167 scopus 로고    scopus 로고
    • 10 Residue folded peptide designed by segment statistics
    • Honda S, Yamasaki K, Sawada Y, Morii H. 10 Residue folded peptide designed by segment statistics. Structure 2004; 12: 1507-1518.
    • (2004) Structure , vol.12 , pp. 1507-1518
    • Honda, S.1    Yamasaki, K.2    Sawada, Y.3    Morii, H.4
  • 77
    • 0032032120 scopus 로고    scopus 로고
    • Conformational interconversions in peptide β-turns: discrimination between enantiomeric conformations by chiral perturbation
    • Raghothama S, Chaddha M, Banumathi S, Ravikumar K, Velmurugan D, Balaram P. Conformational interconversions in peptide β-turns: discrimination between enantiomeric conformations by chiral perturbation. Biopolymers 1998; 45: 191-202.
    • (1998) Biopolymers , vol.45 , pp. 191-202
    • Raghothama, S.1    Chaddha, M.2    Banumathi, S.3    Ravikumar, K.4    Velmurugan, D.5    Balaram, P.6
  • 78
    • 34248383247 scopus 로고    scopus 로고
    • Tuning the β-turn segment in designed peptide β-hairpins: construction of a stable type i' β-turn nucleus and hairpin-helix transition promoting segments
    • Rai R, Raghothama S, Sridharan R, Balaram P. Tuning the β-turn segment in designed peptide β-hairpins: construction of a stable type i' β-turn nucleus and hairpin-helix transition promoting segments. Biopolymers 2007; 88: 350-361.
    • (2007) Biopolymers , vol.88 , pp. 350-361
    • Rai, R.1    Raghothama, S.2    Sridharan, R.3    Balaram, P.4
  • 79
    • 0029843132 scopus 로고    scopus 로고
    • Hydrogen bonding stabilizes globular proteins
    • Myers JK, Pace CN. Hydrogen bonding stabilizes globular proteins. Biophys J 1996; 71(4): 2033-2039.
    • (1996) Biophys J , vol.71 , Issue.4 , pp. 2033-2039
    • Myers, J.K.1    Pace, C.N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.