Evolution of D-lactate dehydrogenase activity from glycerol dehydrogenase and its utility for D-lactate production from lignocellulose

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 47, 2011, Pages 18920-18925

  Wang, Qingzhao ^a   Ingram, Lonnie O ^a   Shanmugam, K T ^a  

^a UNIVERSITY OF FLORIDA   (United States)

Author keywords

Biomass conversion; Bioplastics

Indexed keywords

ACETOLACTATE SYNTHASE; CELLULASE; GLYCEROL DEHYDROGENASE; LACTATE DEHYDROGENASE; LACTIC ACID; LIGNOCELLULOSE; POLYLACTIC ACID; PYRUVIC ACID;

ANAEROBIC FERMENTATION; ARTICLE; BACILLUS COAGULANS; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL MUTATION; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME SPECIFICITY; GENE DELETION; GENE SEQUENCE; GENETIC ENGINEERING; ISOMER; MESOPHILIC BACTERIUM; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TEMPERATURE;

AMINO ACID SEQUENCE; BACILLUS; BASE SEQUENCE; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; EVOLUTION, MOLECULAR; GENETIC ENGINEERING; HYDROGEN-ION CONCENTRATION; LACTATE DEHYDROGENASES; LACTIC ACID; LIGNIN; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS; MUTATION; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SUGAR ALCOHOL DEHYDROGENASES; TEMPERATURE; TRANSFORMATION, BACTERIAL;

EID: 82755197372     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1111085108     Document Type: Article

References (36)

1. Demain AL (2009) Biosolutions to the energy problem. J Ind Microbiol Biot 36:319-332.
2. Lynd LR, et al. (2008) How biotech can transform biofuels. Nat Biotechnol 26:169-172. (Pubitemid 351225943)
3. Mecking S (2004) Nature or petrochemistry?-biologically degradable materials. Angew Chem Int Ed 43:1078-1085.
4. Ragauskas AJ, et al. (2006) The path forward for biofuels and biomaterials. Science 311:484-489. (Pubitemid 43158454)
5. Chen G-Q (2009) A microbial polyhydroxyalkanoates (PHA) based bio- and materials industry. Chem Soc Rev 38:2434-2446.
6. Benninga H (1990) A history of lactic acid making (Kluyver Academic Publishers, Dordrecht, The Netherlands).
7. Datta R, Henry M (2006) Lactic acid: recent advances in products, processes and technologies - a review. J Chem Technol Biot 81:1119-1129. (Pubitemid 43984613)
8. Hofvendahl K, Hans-Hagerdal B (2000) Factors affecting the fermentative lactic acid production from renewable resources. Enzyme Microb Tech 26:87-107.
9. Tsuji H (2005) Poly(lactide) stereocomplexes: formation, structure, properties, degradation, and applications. Macromol Biosci 5:569-597.
10. Teusink B, Smid EJ (2006) Modelling strategies for the industrial exploitation of lactic acid bacteria. Nat Rev Microbiol 4:46-56. (Pubitemid 43135286)
11. Grabar TB, Zhou S, Shanmugam KT, Yomano LP, Ingram LO (2006) Methylglyoxal bypass identified as source of chiral contamination in L(+) and D(-)-lactate fermentations by recombinant Escherichia coli. Biotechnol Lett 28:1527-1535. (Pubitemid 44306118)
12. Zhou S, Shanmugam KT, Yomano LP, Grabar TB, Ingram LO (2006) Fermentation of 12% (w/v) glucose to 1.2 M lactate by Escherichia coli strain SZ194 using mineral salts medium. Biotechnol Lett 28:663-670.
13. Tenenbaum DJ (2008) Food vs.fuel: diversion of crops could cause more hunger. Environ Health Perspect 116:A254-A257.
14. Iyer Pv, Lee YY (1999) Product inhibition in simultaneous saccharification and fermentation of cellulose into lactic acid. Biotechnol Lett 21:371-373.
15. Patel MA, Ou M, Ingram LO, Shanmugam KT (2005) Simultaneous saccharification and co-fermentation of crystalline cellulose and sugar cane bagasse hemicellulose hydrolysate to lactate by a thermotolerant acidophilic Bacillus sp. Biotechnol Progr 21:1453-1460. (Pubitemid 41443001)
16. Garde A, Jonsson G, Schmidt AS, Ahring BK (2002) Lactic acid production from wheat straw hemicellulose hydrolysate by Lactobacillus pentosus and Lactobacillus brevis. Bioresource Technol 81:217-223. (Pubitemid 33123156)
17. Patel MA, et al. (2006) Isolation and characterization of acid-tolerant, thermophilic bacteria for effective fermentation of biomass-derived sugars to lactic acid. Appl Environ Microbiol 72:3228-3235. (Pubitemid 43727970)
18. Tanaka K, et al. (2002) Two different pathways for D-xylose metabolism and the effect of xylose concentration on the yield coefficient of L-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1. Appl Microbiol Biotechnol 60:160-167. (Pubitemid 35217644)
19. Okano K, et al. (2009) Improved production of homo-D-lactic acid via xylose fermentation by introduction of xylose assimilation genes and redirection of the phosphoketolase pathway to the pentose phosphate pathway in L-Lactate dehydrogenase gene-deficient Lactobacillus plantarum. Appl Environ Microbiol 75:7858-7861.
20. Jarboe LR, et al. (2010) Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology. J Biomed Biotechnol 2010:1-18.
21. Ou MS, Mohammed N, Ingram LO, Shanmugam KT (2009) Thermophilic Bacillus coagulans requires less cellulases for simultaneous saccharification and fermentation of cellulose to products than mesophilic microbial biocatalysts. Appl Biochem Biotechnol 155:379-385.
22. Ou MS, Ingram LO, Shanmugam KT (2011) L: (+)-Lactic acid production from non-food carbohydrates by thermotolerant Bacillus coagulans. J Ind Microbiol Biot 38:599-605.
23. Su Y, Rhee MS, Ingram LO, Shanmugam KT (2010) Physiological and fermentation properties of Bacillus coagulans and a mutant lacking fermentative lactate dehydrogenase activity. J Ind Microbiol Biot 38:441-450.
24. Turner NJ (2009) Directed evolution drives the next generation of biocatalysts. Nat Chem Biol 5:567-573.
25. Kim Y, Ingram LO, Shanmugam KT (2007) Construction of an Escherichia coli K-12 mutant for homoethanologenic fermentation of glucose or xylose without foreign genes. Appl Environ Microbiol 73:1766-1771. (Pubitemid 46449057)
26. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410.
27. Zhang H, et al. (2011) Complete genome sequence of Lactobacillus helveticus strain H10. J Bacteriol 193 2666-2667.
28. Spencer P, Bown KJ, Scawen MD, Atkinson T, Gore MG (1989) Isolation and characterization of the glycerol dehydrogenase from Bacillus stearothermophilus. Biochim Biophys Acta 994:270-279. (Pubitemid 19055398)
29. Ruzheinikov SN, et al. (2001) Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase. Structure 9:789-802. (Pubitemid 32913497)
30. Kok J, van der Vossen JM, Venema G (1984) Construction of plasmid cloning vectors for lactic streptococci which also replicate in Bacillus subtilis and Escherichia coli. Appl Environ Microbiol 48:726-731. (Pubitemid 14010837)
31. Luchansky JB, Muriana PM, Klaenhammer TR (1988) Application of electroporation for transfer of plasmid DNA to Lactobacillus, Lactococcus, Leuconostoc, Listeria, Pediococcus, Bacillus, Staphylococcus, Enterococcus and Propionibacterium. Mol Microbiol 2:637-646.
32. Hamilton CM, Aldea M, Washburn BK, Babitzke P, Kushner SR (1989) New method for generating deletions and gene replacements in Escherichia coli. J Bacteriol 171:4617-4622. (Pubitemid 19209055)
33. Kim Y, Ingram LO, Shanmugam KT (2008) Dihydrolipoamide dehydrogenase mutation alters the NADH sensitivity of pyruvate dehydrogenase complex of Escherichia coli K-12. J Bacteriol 190:3851-3858. (Pubitemid 351732863)
34. Lin EC, Magasanik B (1960) The activation of glycerol dehydrogenase from Aerobacter aerogenes by monovalent cations. J Biol Chem 235:1820-1823.
35. Yoshida A, Freese E (1975) Lactate dehydrogenase from Bacillus subtilis. Method Enzymol 41:304-309.
36. Underwood SA, et al. (2002) Genetic changes to optimize carbon partitioning between ethanol and biosynthesis in ethanologenic Escherichia coli. Appl Environ Microbiol 68:6263-6272. (Pubitemid 36342463)