메뉴 건너뛰기




Volumn 12, Issue , 2011, Pages

Exploratory analysis of genomic segmentations with Segtools

Author keywords

[No Author keywords available]

Indexed keywords

AUTOMATICALLY GENERATED; CHROMATIN STRUCTURE; CIS-REGULATORY MODULES; DNA-BINDING PROTEIN; EXPLORATORY ANALYSIS; FUNCTIONAL GENOMICS; HISTONE MODIFICATION; PLASMODIUM FALCIPARUM;

EID: 82055208568     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-12-415     Document Type: Article
Times cited : (11)

References (31)
  • 1
    • 34447333117 scopus 로고    scopus 로고
    • Unsupervised segmentation of continuous genomic data
    • 10.1093/bioinformatics/btm096, 17384021
    • Day N, Hemmaplardh A, Thurman RE, Stamatoyannopoulos JA, Noble WS. Unsupervised segmentation of continuous genomic data. Bioinformatics 2007, 23(11):1424-1426. 10.1093/bioinformatics/btm096, 17384021.
    • (2007) Bioinformatics , vol.23 , Issue.11 , pp. 1424-1426
    • Day, N.1    Hemmaplardh, A.2    Thurman, R.E.3    Stamatoyannopoulos, J.A.4    Noble, W.S.5
  • 2
    • 67650330565 scopus 로고    scopus 로고
    • Spatial Clustering of Multivariate Genomic and Epigenomic Information
    • Jaschek R, Tanay A. Spatial Clustering of Multivariate Genomic and Epigenomic Information. RECOMB Proceedings 2009, 5541:170-183.
    • (2009) RECOMB Proceedings , vol.5541 , pp. 170-183
    • Jaschek, R.1    Tanay, A.2
  • 3
    • 78650747491 scopus 로고    scopus 로고
    • Discovery and characterization of chromatin states for systematic annotation of the human genome
    • 10.1038/nbt.1662, 2919626, 20657582
    • Ernst J, Kellis M. Discovery and characterization of chromatin states for systematic annotation of the human genome. Nature Biotechnology 2010, 28(8):817-825. 10.1038/nbt.1662, 2919626, 20657582.
    • (2010) Nature Biotechnology , vol.28 , Issue.8 , pp. 817-825
    • Ernst, J.1    Kellis, M.2
  • 7
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • 10.1093/bioinformatics/btq033, 2832824, 20110278
    • Quinlan AR, Hall IM. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 2010, 26(6):841-842. 10.1093/bioinformatics/btq033, 2832824, 20110278.
    • (2010) Bioinformatics , vol.26 , Issue.6 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 9
    • 77953909503 scopus 로고    scopus 로고
    • The Genomedata format for storing large-scale functional genomics data
    • [PMC2872006], 10.1093/bioinformatics/btq164, 2872006, 20435580
    • Hoffman MM, Buske OJ, Noble WS. The Genomedata format for storing large-scale functional genomics data. Bioinformatics 2010, 26(11):1458-1459. [PMC2872006], 10.1093/bioinformatics/btq164, 2872006, 20435580.
    • (2010) Bioinformatics , vol.26 , Issue.11 , pp. 1458-1459
    • Hoffman, M.M.1    Buske, O.J.2    Noble, W.S.3
  • 10
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • 10.1016/j.cell.2007.02.005, 17320507
    • Kouzarides T. Chromatin modifications and their function. Cell 2007, 128(4):693-705. 10.1016/j.cell.2007.02.005, 17320507.
    • (2007) Cell , vol.128 , Issue.4 , pp. 693-705
    • Kouzarides, T.1
  • 11
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • 10.1016/j.cell.2007.05.009, 17512414
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837. 10.1016/j.cell.2007.05.009, 17512414.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6    Wei, G.7    Chepelev, I.8    Zhao, K.9
  • 12
    • 61349098460 scopus 로고    scopus 로고
    • Differential chromatin marking of introns and expressed exons by H3K36me3
    • 10.1038/ng.322, 2648722, 19182803
    • Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J. Differential chromatin marking of introns and expressed exons by H3K36me3. Nature Genetics 2009, 41(3):376-381. 10.1038/ng.322, 2648722, 19182803.
    • (2009) Nature Genetics , vol.41 , Issue.3 , pp. 376-381
    • Kolasinska-Zwierz, P.1    Down, T.2    Latorre, I.3    Liu, T.4    Liu, X.S.5    Ahringer, J.6
  • 13
    • 69949132191 scopus 로고    scopus 로고
    • Chromatin organization marks exon-intron structure
    • 10.1038/nsmb.1659, 19684600
    • Schwartz S, Meshorer E, Ast G. Chromatin organization marks exon-intron structure. Nature Structural Molecular Biology 2009, 16(9):990-995. 10.1038/nsmb.1659, 19684600.
    • (2009) Nature Structural Molecular Biology , vol.16 , Issue.9 , pp. 990-995
    • Schwartz, S.1    Meshorer, E.2    Ast, G.3
  • 16
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • ENCODE Consortium
    • ENCODE Consortium The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004, 306(5696):636-640. ENCODE Consortium.
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
  • 19
    • 79955550445 scopus 로고    scopus 로고
    • A user's guide to the encyclopedia of DNA elements (ENCODE)
    • 10.1371/journal.pbio.1001046, 3079585, 21526222, ENCODE Consortium
    • ENCODE Consortium A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biology 2011, 9(4):e1001046. 10.1371/journal.pbio.1001046, 3079585, 21526222, ENCODE Consortium.
    • (2011) PLoS Biology , vol.9 , Issue.4
  • 20
    • 80555139654 scopus 로고    scopus 로고
    • CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks
    • Takahashi H, Kato S, Murata M, Carninci P. CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks. Methods in Molecular Biology 2012, 784:181-200.
    • (2012) Methods in Molecular Biology , vol.784 , pp. 181-200
    • Takahashi, H.1    Kato, S.2    Murata, M.3    Carninci, P.4
  • 23
    • 67649524640 scopus 로고    scopus 로고
    • Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements)
    • 10.1016/j.ymeth.2009.03.003, 2710428, 19303047
    • Giresi PG, Lieb JD. Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements). Methods 2009, 48(3):233-239. 10.1016/j.ymeth.2009.03.003, 2710428, 19303047.
    • (2009) Methods , vol.48 , Issue.3 , pp. 233-239
    • Giresi, P.G.1    Lieb, J.D.2
  • 26
    • 79956326042 scopus 로고    scopus 로고
    • Nucleosome occupancy at transcription start sites in the human malaria parasite: A hard-wired evolution of virulence?
    • Ponts N, Harris EY, Lonardi S, Le Roch KG. Nucleosome occupancy at transcription start sites in the human malaria parasite: A hard-wired evolution of virulence?. Infection Genetics and Evolution 2011, 11(4):716-724.
    • (2011) Infection Genetics and Evolution , vol.11 , Issue.4 , pp. 716-724
    • Ponts, N.1    Harris, E.Y.2    Lonardi, S.3    Le Roch, K.G.4
  • 31
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • 10.1186/gb-2010-11-8-r86, 2945788, 20738864
    • Goecks J, Nekrutenko A, Taylor J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biology 2010, 11(8):R86. 10.1186/gb-2010-11-8-r86, 2945788, 20738864.
    • (2010) Genome Biology , vol.11 , Issue.8
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.