-
1
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A., et al.: High-resolution profiling of histone methylations in the human genome. Cell 129(4), 823-837 (2007)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
-
2
-
-
40149095913
-
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
-
Li, X.Y., et al.: Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol. 6(2), e27 (2008)
-
(2008)
PLoS Biol
, vol.6
, Issue.2
-
-
Li, X.Y.1
-
3
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner, A., et al.: Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454(7205), 766-770 (2008)
-
(2008)
Nature
, vol.454
, Issue.7205
, pp. 766-770
-
-
Meissner, A.1
-
4
-
-
34547624303
-
Genome-wide maps of chromatin state in pluripotent and lineagecommitted cells
-
Mikkelsen, T.S., et al.: Genome-wide maps of chromatin state in pluripotent and lineagecommitted cells. Nature 448(7153), 553-560 (2007)
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 553-560
-
-
Mikkelsen, T.S.1
-
5
-
-
46249112085
-
Combinatorial patterns of histone acetylations and methylations in the human genome
-
Wang, Z., et al.: Combinatorial patterns of histone acetylations and methylations in the human genome. Nat. Genet. 40(7), 897-903 (2008)
-
(2008)
Nat. Genet
, vol.40
, Issue.7
, pp. 897-903
-
-
Wang, Z.1
-
6
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
Liu, C.L., et al.: Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol. 3(10), e328 (2005)
-
(2005)
PLoS Biol
, vol.3
, Issue.10
-
-
Liu, C.L.1
-
7
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther, M.G., et al.: A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130(1), 77-88 (2007)
-
(2007)
Cell
, vol.130
, Issue.1
, pp. 77-88
-
-
Guenther, M.G.1
-
8
-
-
51349105905
-
Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line
-
Gal-Yam, E.N., et al.: Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line. Proc. Natl. Acad. Sci. USA 105(35), 12979-12984 (2008)
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, Issue.35
, pp. 12979-12984
-
-
Gal-Yam, E.N.1
-
9
-
-
44349131472
-
Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
-
Kondo, Y., et al.: Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation. Nat. Genet. 40(6), 741-750 (2008)
-
(2008)
Nat. Genet
, vol.40
, Issue.6
, pp. 741-750
-
-
Kondo, Y.1
-
10
-
-
49649122472
-
-
Moving AHEAD with an international human epigenome project
-
Moving AHEAD with an international human epigenome project. Nature 454(7205), 711- 715 (2008)
-
(2008)
Nature
, vol.454
, Issue.7205
, pp. 711-715
-
-
-
11
-
-
48249153426
-
-
Fu, Y., et al.: The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet. 4(7), e1000138 (2008)
-
Fu, Y., et al.: The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. PLoS Genet. 4(7), e1000138 (2008)
-
-
-
-
12
-
-
0032728081
-
Clustering gene expression patterns
-
Ben-Dor, A., Shamir, R., Yakhini, Z.: Clustering gene expression patterns. J. Comput. Biol. 6(3-4), 281-297 (1999)
-
(1999)
J. Comput. Biol
, vol.6
, Issue.3-4
, pp. 281-297
-
-
Ben-Dor, A.1
Shamir, R.2
Yakhini, Z.3
-
13
-
-
0032441150
-
Cluster analysis and display of genome-wide expression patterns
-
Eisen, M.B., et al.: Cluster analysis and display of genome-wide expression patterns. Proc. Natl. Acad. Sci. USA 95(25), 14863-14868 (1998)
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, Issue.25
, pp. 14863-14868
-
-
Eisen, M.B.1
-
14
-
-
1542357674
-
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
-
Tanay, A., et al.: Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc. Natl. Acad. Sci. USA 101(9), 2981-2986 (2004)
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, Issue.9
, pp. 2981-2986
-
-
Tanay, A.1
-
15
-
-
0037941585
-
Module networks: Identifying regulatory modules and their conditionspecific regulators from gene expression data
-
Segal, E., et al.: Module networks: identifying regulatory modules and their conditionspecific regulators from gene expression data. Nat. Genet. 34(2), 166-176 (2003)
-
(2003)
Nat. Genet
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
-
16
-
-
1542413503
-
The Elements of Statistical Learning
-
Springer, Heidelberg
-
Hastie, T., Tibshirani, R., Friedman, J.: The Elements of Statistical Learning. Series in Statistics, p. 533. Springer, Heidelberg (2001)
-
(2001)
Series in Statistics
, pp. 533
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.3
-
17
-
-
46749121446
-
Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments
-
Kuznetsov, V.A., et al.: Computational analysis and modeling of genome-scale avidity distribution of transcription factor binding sites in chip-pet experiments. Genome Inform. 19, 83-94 (2007)
-
(2007)
Genome Inform
, vol.19
, pp. 83-94
-
-
Kuznetsov, V.A.1
-
18
-
-
0003516147
-
-
Cambridge University Press, Cambridge
-
Durbin, R., Eddy, S., Krogh, A., Mitchison, G.: Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. Cambridge University Press, Cambridge (1998)
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Krogh, A.3
Mitchison, G.4
-
19
-
-
18444402182
-
The Ensembl genome database project
-
Hubbard, T., et al.: The Ensembl genome database project. Nucleic. Acids Res. 30(1), 38- 41 (2002)
-
(2002)
Nucleic. Acids Res
, vol.30
, Issue.1
, pp. 38-41
-
-
Hubbard, T.1
-
20
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W.J., et al.: The human genome browser at UCSC. Genome Res. 12(6), 996-1006 (2002)
-
(2002)
Genome Res
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
-
21
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
Guelen, L., et al.: Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions. Nature 453(7197), 948-951 (2008)
-
(2008)
Nature
, vol.453
, Issue.7197
, pp. 948-951
-
-
Guelen, L.1
-
22
-
-
33947201809
-
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
-
Kim, T.H., et al.: Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome. Cell 128(6), 1231-1245 (2007)
-
(2007)
Cell
, vol.128
, Issue.6
, pp. 1231-1245
-
-
Kim, T.H.1
-
23
-
-
33847084602
-
Genome regulation by Polycomb and trithorax proteins
-
Schuettengruber, B., et al.: Genome regulation by Polycomb and trithorax proteins. Cell 128(4), 735-745 (2007)
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 735-745
-
-
Schuettengruber, B.1
-
24
-
-
33845451555
-
Profile of histone lysine methylation across transcribed mammalian chromatin
-
Vakoc, C.R., et al.: Profile of histone lysine methylation across transcribed mammalian chromatin. Mol. Cell Biol. 26(24), 9185-9195 (2006)
-
(2006)
Mol. Cell Biol
, vol.26
, Issue.24
, pp. 9185-9195
-
-
Vakoc, C.R.1
-
25
-
-
40949103054
-
Changes in H3K79 methylation during preimplantation development in mice
-
Ooga, M., et al.: Changes in H3K79 methylation during preimplantation development in mice. Biol. Reprod. 78(3), 413-424 (2008)
-
(2008)
Biol. Reprod
, vol.78
, Issue.3
, pp. 413-424
-
-
Ooga, M.1
-
26
-
-
55549118625
-
-
Hon, G., Ren, B., Wang, W.: ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome. PLoS Comput. Biol. 4(10), e1000201 (2008)
-
Hon, G., Ren, B., Wang, W.: ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome. PLoS Comput. Biol. 4(10), e1000201 (2008)
-
-
-
-
27
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer, L.A., et al.: Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441(7091), 349-353 (2006)
-
(2006)
Nature
, vol.441
, Issue.7091
, pp. 349-353
-
-
Boyer, L.A.1
-
28
-
-
33646865180
-
Control of developmental regulators by Polycomb in human embryonic stem cells
-
Lee, T.I., et al.: Control of developmental regulators by Polycomb in human embryonic stem cells. Cell 125(2), 301-313 (2006)
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 301-313
-
-
Lee, T.I.1
-
29
-
-
33646070846
-
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
-
Bernstein, B.E., et al.: A bivalent chromatin structure marks key developmental genes in embryonic stem cells. Cell 125(2), 315-326 (2006)
-
(2006)
Cell
, vol.125
, Issue.2
, pp. 315-326
-
-
Bernstein, B.E.1
|