메뉴 건너뛰기




Volumn 5, Issue 9, 2011, Pages 1494-1504

Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger

Author keywords

Collimonas; fungistasis; mycophagy; oxalate; transcriptomics

Indexed keywords

NITROGEN;

EID: 80955177577     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2011.29     Document Type: Article
Times cited : (97)

References (82)
  • 2
    • 0032920097 scopus 로고    scopus 로고
    • Two genes from Bacillus subtilis under the sole control of the general stress transcription factor σ(B)
    • Akbar S, Lee SY, Boylan SA, Price CW. (1999). Two genes from Bacillus subtilis under the sale control of the general stress transcription factor sB. Microbiology 145: 1069-1078. (Pubitemid 29231810)
    • (1999) Microbiology , vol.145 , Issue.5 , pp. 1069-1078
    • Akbar, S.1    Lee, S.Y.2    Boylan, S.A.3    Price, C.W.4
  • 3
    • 0024961965 scopus 로고
    • Oxalate: Formate exchange. The basis for energy coupling in Oxalobacter
    • Anantharam V, Allison MJ, Maloney PC. (1989). Oxalate: Formate exchange. The basis for energy coupling in Oxalobacter. J Biol Chem 264: 7244-7250.
    • (1989) J Biol Chem , vol.264 , pp. 7244-7250
    • Anantharam, V.1    Allison, M.J.2    Maloney, P.C.3
  • 4
    • 0031896503 scopus 로고    scopus 로고
    • Characterization of the Aspergillus nidulans nmrA gene involved in nitrogen metabolite repression
    • Andrianopoulos A, Kourambas S, Sharp JA, Davis MA, Hynes MJ. (1998). Characterization of the Aspergillus nidulans nmrA gene involved in nitrogen metabolite repression. J Bacteriol 180: 1973-1977. (Pubitemid 28173086)
    • (1998) Journal of Bacteriology , vol.180 , Issue.7 , pp. 1973-1977
    • Andrianopoulos, A.1    Kourambas, S.2    Sharp, J.A.3    Davis, M.A.4    Hynes, M.J.5
  • 5
    • 80955180716 scopus 로고    scopus 로고
    • Guide to performing relative quantitation of gene expression using real-time quantitative PCR. Part Number 4371095
    • Applied Biosystems (2008). Guide to performing relative quantitation of gene expression using real-time quantitative PCR. Part Number 4371095, Rev. B.
    • (2008) Rev. B
    • Biosystems, A.1
  • 6
    • 0034889360 scopus 로고    scopus 로고
    • Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system
    • DOI 10.1101/gr.181001
    • Aravind L, Koonin EV. (2001). Prokaryotic homologs of the eukaryotic DNA-end-binding protein Ku, novel domains in the Ku protein and prediction of a prokaryotic double-strand break repair system. Genome Res 11: 1365-1374. (Pubitemid 32771543)
    • (2001) Genome Research , vol.11 , Issue.8 , pp. 1365-1374
    • Aravind, L.1    Koonin, E.V.2
  • 8
    • 57649223953 scopus 로고    scopus 로고
    • The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp
    • DOI 10.1111/j.1469-8137.2008.02675.x
    • Barret M, Frey-Klett P, Boutin M, Guillerm-Erckelboudt AY, Martin F, Guillot L et al. (2009). The plant pathogenic fungus Gaeumannomyces graminis var. tritici improves bacterial growth and triggers early gene regulations in the biocontrol strain Pseudomonas fluorescens Pf29Arp. New Phytol 181: 435-447. (Pubitemid 352840368)
    • (2009) New Phytologist , vol.181 , Issue.2 , pp. 435-447
    • Barret, M.1    Frey-Klett, P.2    Boutin, M.3    Guillerm-Erckelboudt, A.-Y.4    Martin, F.5    Guillot, L.6    Sarniguet, A.7
  • 10
    • 77950859427 scopus 로고    scopus 로고
    • Bacterial secretion systems with an emphasis on the chlamydial type III secretion system
    • Beeckman DSA, Vanrompay DCG. (2009). Bacterial secretion systems with an emphasis on the chlamydial type III secretion system. Curr Issues Mol Biol 12: 17-41.
    • (2009) Curr Issues Mol Biol , vol.12 , pp. 17-41
    • Dsa, B.1    Dcg, V.2
  • 11
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • DOI 10.1093/bioinformatics/19.2.185
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193. (Pubitemid 36181903)
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 12
    • 18444411651 scopus 로고    scopus 로고
    • The social life of ribosomal proteins
    • DOI 10.1111/j.1742-4658.2005.04651.x
    • Brodersen DE, Nissen P. (2005). The social life of ribosomal proteins. FEBS J 272: 2098-2108. (Pubitemid 40646781)
    • (2005) FEBS Journal , vol.272 , Issue.9 , pp. 2098-2108
    • Brodersen, D.E.1    Nissen, P.2
  • 13
    • 27844506497 scopus 로고    scopus 로고
    • Type II secretion: A protein secretion system for all seasons
    • DOI 10.1016/j.tim.2005.09.005, PII S0966842X05002568
    • Cianciotto NP. (2005). Type II secretion: A protein secretion system for all seasons. Trends Microbiol 13: 581-588. (Pubitemid 41661339)
    • (2005) Trends in Microbiology , vol.13 , Issue.12 , pp. 581-588
    • Cianciotto, N.P.1
  • 14
    • 0028870066 scopus 로고
    • Light and developmental regulation of the gene con-10 of Neurospora crassa
    • Corrochano LM, Lauter FR, Ebbole DJ, Yanofsky C. (1995). Light and developmental regulation of the gene con-10 of Neurospora crassa. Dev Biol 167: 190-200.
    • (1995) Dev Biol , vol.167 , pp. 190-200
    • Corrochano, L.M.1    Lauter, F.R.2    Ebbole, D.J.3    Yanofsky, C.4
  • 16
    • 3543055755 scopus 로고    scopus 로고
    • 2+-binding domain of human nucleobindin (calnuc)
    • DOI 10.1021/bi049310a
    • De Alba E, Tjandra N. (2004). Structural studies on the Ca2+ binding domain of human nucleobindin (calnuc). Biochemistry 43: 10039-10049. (Pubitemid 39030894)
    • (2004) Biochemistry , vol.43 , Issue.31 , pp. 10039-10049
    • De Alba, E.1    Tjandra, N.2
  • 17
    • 0035432288 scopus 로고    scopus 로고
    • Growth of Chitinolytic Dune Soil β-Subclass Proteobacteria in Response to Invading Fungal Hyphae
    • DOI 10.1128/AEM.67.8.3358-3362.2001
    • De Boer W, Gunnewiek P, Kowalchuk GA, Van Veen JA. (2001). Growth of chitinolytic dune soil beta-subclass Proteobacteria in response to invading fungal hyphae. Appl Environ Microbiol 67: 3358-3362. (Pubitemid 33641200)
    • (2001) Applied and Environmental Microbiology , vol.67 , Issue.8 , pp. 3358-3362
    • De Boer, W.1    Klein Gunnewiek, P.J.A.2    Kowalchuk, G.A.3    Van Veen, J.A.4
  • 20
    • 7244221600 scopus 로고    scopus 로고
    • Role of chemotaxis toward fusaric acid in colonization of hyphae of Fusarium oxysporum f. sp. radicis-lycopersici by Pseudomonas fluorescens WCS365
    • De Weert S, Kuiper I, Lagendijk EL, Lamers GEM, Lugtenberg BJJ. (2004). Role of chemotaxis toward fusaric acid in colonization of hyphae of Fusarium oxysporum f. sp radicis-lycopersici by Pseudomonas fluorescens WCS365. Mol Plant Microbe Interact 17: 1185-1191. (Pubitemid 39428875)
    • (2004) Molecular Plant-Microbe Interactions , vol.17 , Issue.11 , pp. 1185-1191
    • De Weert, S.1    Kuiper, I.2    Lagendijk, E.L.3    Lamers, G.E.M.4    Lugtenberg, B.J.J.5
  • 21
    • 0033213017 scopus 로고    scopus 로고
    • Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues
    • De Zwaan TM, Carroll AM, Valent B, Sweigard JA. (1999). Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. Plant Cell 11: 2013-2030.
    • (1999) Plant Cell , vol.11 , pp. 2013-2030
    • De Zwaan, T.M.1    Carroll, A.M.2    Valent, B.3    Sweigard, J.A.4
  • 22
    • 34547650367 scopus 로고    scopus 로고
    • The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N
    • DOI 10.1111/j.1469-8137.2007.02148.x
    • Deveau A, Palin B, Delaruelle C, Peter M, Kohler A, Pierrat JC et al. (2007). The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N. New Phytol 175: 743-755. (Pubitemid 47222636)
    • (2007) New Phytologist , vol.175 , Issue.4 , pp. 743-755
    • Deveau, A.1    Palin, B.2    Delaruelle, C.3    Peter, M.4    Kohler, A.5    Pierrat, J.C.6    Sarniguet, A.7    Garbaye, J.8    Martin, F.9    Frey-Klett, P.10
  • 23
    • 0031818761 scopus 로고    scopus 로고
    • Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria
    • DOI 10.1007/s002030050616
    • Dimroth P, Schink B. (1998). Energy conservation in the decarboxylation of dicarboxylic acids by fermenting bacteria. Arch Microbiol 170: 69-77. (Pubitemid 28366023)
    • (1998) Archives of Microbiology , vol.170 , Issue.2 , pp. 69-77
    • Dimroth, P.1    Schink, B.2
  • 24
    • 0029660710 scopus 로고    scopus 로고
    • Oxalate production by fungi: Its role in pathogenicity and ecology in the soil environment
    • Dutton MV, Evans CS. (1996). Oxalate production by fungi: Its role in pathogenicity and ecology in the soil environment. Can J Microbiol 42: 881-895.
    • (1996) Can J Microbiol , vol.42 , pp. 881-895
    • Dutton, M.V.1    Evans, C.S.2
  • 25
    • 0035954554 scopus 로고    scopus 로고
    • Polysaccharide synthesis as a carbon dissipation mechanism in metabolically uncoupled Xanthomonas campestris cells
    • DOI 10.1016/S0168-1656(01)00290-5, PII S0168165601002905
    • Esgalhado ME, Caldeira AT, Roseiro JC, Emery AN. (2001). Polysaccharide synthesis as a carbon dissipation mechanism in metabolically uncoupled Xanthomonas campestris cells. J Biotechnol 89: 55-63. (Pubitemid 32709992)
    • (2001) Journal of Biotechnology , vol.89 , Issue.1 , pp. 55-63
    • Esgalhado M.Eugenia1    Caldeira, A.T.2    Roseiro J.Carlos3    Emery A.Nick4
  • 26
    • 38049139296 scopus 로고    scopus 로고
    • Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil
    • Folman LB, Gunnewiek P, Boddy L, de Boer W. (2008). Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil. FEMS Microbiol Ecol 63: 181-191.
    • (2008) FEMS Microbiol Ecol , vol.63 , pp. 181-191
    • Folman, L.B.1    Gunnewiek, P.2    Boddy, L.3    De Boer, W.4
  • 29
    • 1342288026 scopus 로고    scopus 로고
    • Affy - Analysis of Affymetrix GeneChip data at the probe level
    • DOI 10.1093/bioinformatics/btg405
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. (2004). Affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 20: 307-315. (Pubitemid 38262761)
    • (2004) Bioinformatics , vol.20 , Issue.3 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 30
    • 0027490676 scopus 로고
    • Sequence and regulation of the uapA gene encoding a uric acid-xanthine permease in the fungus Aspergillus nidulans
    • Gorfinkiel L, Diallinas G, Scazzocchio C. (1993). Sequence and regulation of the Uapa gene encoding a uric acidxanthine permease in the fungus Aspergillus nidulans. J Biol Chem 268: 23376-23381. (Pubitemid 23328060)
    • (1993) Journal of Biological Chemistry , vol.268 , Issue.31 , pp. 23376-23381
    • Gorfinkiel, L.1    Diallinas, G.2    Scazzocchio, C.3
  • 31
    • 0015422381 scopus 로고
    • Sterols from polyene-resistant mutants of Candida albicans
    • Hamilton JM. (1972). Sterols from polyene-resistant mutants of Candida albicans. J Gen Microbiol 73: 201-203.
    • (1972) J Gen Microbiol , vol.73 , pp. 201-203
    • Hamilton, J.M.1
  • 32
    • 0031679433 scopus 로고    scopus 로고
    • Non-specific, general and multiple stress resistance of growth-restricted Bacillus subtilis cells by the expression of the σ(B) regulon
    • DOI 10.1046/j.1365-2958.1998.00977.x
    • Hecker M, Volker U. (1998). Non specific, general and multiple stress resistance of growth restricted Bacillus subtilis cells by the expression of the sB regulon. Mol Microbiol 29: 1129-1136. (Pubitemid 28408836)
    • (1998) Molecular Microbiology , vol.29 , Issue.5 , pp. 1129-1136
    • Hecker, M.1    Volker, U.2
  • 33
    • 58549089880 scopus 로고    scopus 로고
    • Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi
    • Höppener-Ogawa S, Leveau JHJ, van Veen JA, de Boer W. (2009). Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi. ISME J 3: 190-198.
    • (2009) ISME J , vol.3 , pp. 190-198
    • Höppener-Ogawa, S.1    Jhj, L.2    Van Veen, J.A.3    De Boer, W.4
  • 34
    • 0001875549 scopus 로고
    • Calcium oxalate formation in higher plants
    • In: Khan SR (ed) CRC Press: Boca Raton, Florida
    • Horner HT, Wagner BL. (1995). Calcium oxalate formation in higher plants. In: Khan SR (ed). Calcium Oxalate in Biological Systems. CRC Press: Boca Raton, Florida, pp 53-72.
    • (1995) Calcium Oxalate in Biological Systems. , pp. 53-72
    • Horner, H.T.1    Wagner, B.L.2
  • 37
    • 0037767508 scopus 로고    scopus 로고
    • The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses
    • DOI 10.1128/JB.185.15.4519-4529.2003
    • Ishige T, Krause M, Bott M, Wendisch VF, Sahm H. (2003). The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses. J Bacteriol 185: 4519-4529. (Pubitemid 36890499)
    • (2003) Journal of Bacteriology , vol.185 , Issue.15 , pp. 4519-4529
    • Ishige, T.1    Krause, M.2    Bott, M.3    Wendisch, V.F.4    Sahm, H.5
  • 38
    • 1842453025 scopus 로고    scopus 로고
    • Evidence of a New Role for the High-Osmolarity Glycerol Mitogen-Activated Protein Kinase Pathway in Yeast: Regulating Adaptation to Citric Acid Stress
    • DOI 10.1128/MCB.24.8.3307-3323.2004
    • Lawrence CL, Botting CH, Antrobus R, Coote PJ. (2004). Evidence of a new role for the high osmolarity glycerol mitogen activated protein kinase pathway in yeast: Regulating adaptation to citric acid stress. Mol Cell Biol 24: 3307-3323. (Pubitemid 38452075)
    • (2004) Molecular and Cellular Biology , vol.24 , Issue.8 , pp. 3307-3323
    • Lawrence, C.L.1    Botting, C.H.2    Antrobus, R.3    Coote, P.J.4
  • 39
    • 4344646430 scopus 로고    scopus 로고
    • Phylogeny-function analysis of (meta)genomic libraries: Screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH)
    • DOI 10.1111/j.1462-2920.2004.00673.x
    • Leveau JHJ, Gerards S, de Boer W, van Veen JA. (2004). Phylogeny-function analysis of (meta)genomic libraries: Screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LILFISH). Environ Microbiol 6: 990-998. (Pubitemid 39123253)
    • (2004) Environmental Microbiology , vol.6 , Issue.9 , pp. 990-998
    • Leveau, J.H.J.1    Gerards, S.2    De Boer, W.3    Van Veen, J.A.4
  • 40
    • 33745142507 scopus 로고    scopus 로고
    • Genomic flank-sequencing of plasposon insertion sites for rapid identification of functional genes
    • DOI 10.1016/j.mimet.2005.12.010, PII S0167701205003702
    • Leveau JHJ, Gerards S, Fritsche K, Zondag G, van Veen JA. (2006). Genomic flank-sequencing of plasposon insertion sites for rapid identification of functional genes. J Microbiol Methods 66: 276-285. (Pubitemid 43903033)
    • (2006) Journal of Microbiological Methods , vol.66 , Issue.2 , pp. 276-285
    • Leveau, J.H.J.1    Gerards, S.2    Fritsche, K.3    Zondag, G.4    Van Veen, J.A.5
  • 41
    • 38949131843 scopus 로고    scopus 로고
    • Bacterial mycophagy: Definition and diagnosis of a unique bacterial-fungal interaction
    • DOI 10.1111/j.1469-8137.2007.02325.x
    • Leveau JHJ, Preston GM. (2008). Bacterial mycophagy: Definition and diagnosis of a unique bacterial-fungal interaction. New Phytol 177: 859-876. (Pubitemid 351225126)
    • (2008) New Phytologist , vol.177 , Issue.4 , pp. 859-876
    • Leveau, J.H.J.1    Preston, G.M.2
  • 42
    • 77649088016 scopus 로고    scopus 로고
    • The bacterial genus Collimonas: Mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments
    • Leveau JHJ, Uroz S, de Boer W. (2010). The bacterial genus Collimonas: Mycophagy, weathering and other adaptive solutions to life in oligotrophic soil environments. Environ Microbiol 12: 281-292.
    • (2010) Environ Microbiol , vol.12 , pp. 281-292
    • Jhj, L.1    Uroz, S.2    De Boer, W.3
  • 43
    • 4644334563 scopus 로고    scopus 로고
    • Identification and complementation of abnormal hyphal branch mutants ahbA1 and ahbB1 in Aspergillus nidulans
    • DOI 10.1016/j.fgb.2004.07.005, PII S108718450400115X
    • Lin XR, Momany M. (2004). Identification and complementation of abnormal hyphal branch mutants ahbA1 and ahbB1 in Aspergillus nidulans. Fungal Genet Biol 41: 998-1006. (Pubitemid 39304096)
    • (2004) Fungal Genetics and Biology , vol.41 , Issue.11 , pp. 998-1006
    • Lin, X.1    Momany, M.2
  • 44
    • 38349088043 scopus 로고    scopus 로고
    • Transcriptome analysis of Lactococcus lactis in coculture with Saccharomyces cerevisiae
    • Maligoy M, Mercade M, Cocaign-Bousquet M, Loubiere P. (2008). Transcriptome analysis of Lactococcus lactis in coculture with Saccharomyces cerevisiae. Appl Environ Microbiol 74: 485-494.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 485-494
    • Maligoy, M.1    Mercade, M.2    Cocaign-Bousquet, M.3    Loubiere, P.4
  • 45
    • 0017278779 scopus 로고
    • Active subunits of Escherichia coli glutamate synthase
    • Mantsala P, Zalkin H. (1976). Active subunits of Escherichia coli glutamate synthase. J Bacteriol 126: 539-541.
    • (1976) J Bacteriol , vol.126 , pp. 539-541
    • Mantsala, P.1    Zalkin, H.2
  • 46
    • 0034986869 scopus 로고    scopus 로고
    • Insertion mutagenesis of wca reduces acid and heat tolerance of enterohemorrhagic Escherichia coli O157:H7
    • DOI 10.1128/JB.183.12.3811-3815.2001
    • Mao Y, Doyle MP, Chen JR. (2001). Insertion mutagenesis of wca reduces acid and heat tolerance of enterohemorrhagic Escherichia coli O157:H7. J Bacteriol 183: 3811-3815. (Pubitemid 32510450)
    • (2001) Journal of Bacteriology , vol.183 , Issue.12 , pp. 3811-3815
    • Mao, Y.1    Doyle, M.P.2    Chen, J.3
  • 47
    • 51649100333 scopus 로고    scopus 로고
    • Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: Sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331
    • Mela F, Fritsche K, Boersma H, van Elsas JD, Bartels D, Meyer F et al. (2008). Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: Sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331. FEMS Microbiol Ecol 66: 45-62.
    • (2008) FEMS Microbiol Ecol , vol.66 , pp. 45-62
    • Mela, F.1    Fritsche, K.2    Boersma, H.3    Van Elsas, J.D.4    Bartels, D.5    Meyer, F.6
  • 49
    • 36348933829 scopus 로고    scopus 로고
    • Survival in the presence of antifungals: Genome-wide expression profiling of aspergillus niger in response to sublethal concentrations of caspofungin and fenpropimorph
    • DOI 10.1074/jbc.M705856200
    • Meyer V, Damveld RA, Arentshorst M, Stahl U, van den Hondel C, Ram AFJ. (2007). Survival in the presence of antifungals-genome-wide expression profiling of Aspergillus niger in response to sublethal concentrations of caspofungin and fenpropimorph. J Biol Chem 282: 32935-32948. (Pubitemid 350159304)
    • (2007) Journal of Biological Chemistry , vol.282 , Issue.45 , pp. 32935-32948
    • Meyer, V.1    Damveld, R.A.2    Arentshorst, M.3    Stahl, U.4    Van Den Hondel, C.A.M.J.J.5    Ram, A.F.J.6
  • 51
    • 0032500616 scopus 로고    scopus 로고
    • +-linked formate dehydrogenase of Ralstonia eutropha
    • DOI 10.1074/jbc.273.41.26349
    • Oh JI, Bowien B. (1998). Structural analysis of the fds operon encoding the NAD(+)-linked formate dehydrogenase of Ralstonia eutropha. J Biol Chem 273: 26349-26360. (Pubitemid 28471638)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.41 , pp. 26349-26360
    • Oh, J.-I.1    Bowien, B.2
  • 53
    • 59449087274 scopus 로고    scopus 로고
    • Bacterial effects on arbuscular mycorrhizal fungi and mycorrhiza development as influenced by the bacteria, fungi, and host plant
    • Pivato B, Offre P, Marchelli S, Barbonaglia B, Mougel C, Lemanceau P et al. (2009). Bacterial effects on arbuscular mycorrhizal fungi and mycorrhiza development as influenced by the bacteria, fungi, and host plant. Mycorrhiza 19: 81-90.
    • (2009) Mycorrhiza , vol.19 , pp. 81-90
    • Pivato, B.1    Offre, P.2    Marchelli, S.3    Barbonaglia, B.4    Mougel, C.5    Lemanceau, P.6
  • 54
    • 0036260722 scopus 로고    scopus 로고
    • B-dependent general stress regulons of Bacillus subtilis
    • Prágai Z, Harwood CR. (2002). Regulatory interactions between the Pho and sB-dependent general stress regulons of Bacillus subtilis. Microbiology 148: 1593-1602. (Pubitemid 34567237)
    • (2002) Microbiology , vol.148 , Issue.5 , pp. 1593-1602
    • Pragai, Z.1    Harwood, C.R.2
  • 55
    • 3142752412 scopus 로고
    • Metabolism of C1 compounds in autotrophic and heterotrophic microorganisms
    • Quayle JR. (1961). Metabolism of C1 compounds in autotrophic and heterotrophic microorganisms. Annu Rev Microbiol 15: 119-152.
    • (1961) Annu Rev Microbiol , vol.15 , pp. 119-152
    • Quayle, J.R.1
  • 56
    • 0024027150 scopus 로고
    • Molecular analysis of a Neurospora crassa gene expressed during conidiation
    • Roberts AN, Berlin V, Hager KM, Yanofsky C. (1988). Molecular analysis of a Neurospora crassa gene expressed during conidiation. Mol Cell Biol 8: 2411-2418.
    • (1988) Mol Cell Biol , vol.8 , pp. 2411-2418
    • Roberts, A.N.1    Berlin, V.2    Hager, K.M.3    Yanofsky, C.4
  • 58
    • 70349976263 scopus 로고    scopus 로고
    • Trees, mycorrhiza and minerals-field relevance of in vitro experiments
    • Rosling A. (2009). Trees, mycorrhiza and minerals-field relevance of in vitro experiments. Geomicrobiol J 26: 389-401.
    • (2009) Geomicrobiol J , vol.26 , pp. 389-401
    • Rosling, A.1
  • 59
    • 0032832111 scopus 로고    scopus 로고
    • Oxalic acid production by Aspergillus niger: An oxalate-non-producing mutant produces citric acid at pH 5 and in the presence of manganese
    • Ruijter GJG, van de Vondervoort PJI, Visser J. (1999). Oxalic acid production by Aspergillus niger: An oxalate-non-producing mutant produces citric acid at pH 5 and in the presence of manganese. Microbiology 145: 2569-2576. (Pubitemid 29454375)
    • (1999) Microbiology , vol.145 , Issue.9 , pp. 2569-2576
    • Ruijter, G.J.G.1    Van De Vondervoort, P.J.I.2    Visser, J.3
  • 60
    • 0042707939 scopus 로고    scopus 로고
    • Oxalotrophic bacteria
    • DOI 10.1016/S0923-2508(03)00112-8
    • Sahin N. (2003). Oxalotrophic bacteria. Res Microbiol 154: 399-407. (Pubitemid 36929865)
    • (2003) Research in Microbiology , vol.154 , Issue.6 , pp. 399-407
    • Sahin, N.1
  • 61
    • 32944473346 scopus 로고    scopus 로고
    • Mycorrhiza helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria
    • Schrey SD, Schellhammer M, Ecke M, Hampp R, Tarkka MT. (2005). Mycorrhiza helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria. New Phytol 168: 205-216.
    • (2005) New Phytol , vol.168 , pp. 205-216
    • Schrey, S.D.1    Schellhammer, M.2    Ecke, M.3    Hampp, R.4    Tarkka, M.T.5
  • 62
    • 33746887528 scopus 로고    scopus 로고
    • Application of global analysis techniques to Corynebacterium glutamicum: New insights into nitrogen regulation
    • DOI 10.1016/j.jbiotec.2006.03.039, PII S0168165606003178
    • Silberbach M, Burkovski A. (2006). Application of global analysis techniques to Corynebacterium glutamicum: New insights into nitrogen regulation. J Biotechnol 126: 101-110. (Pubitemid 44402770)
    • (2006) Journal of Biotechnology , vol.126 , Issue.1 , pp. 101-110
    • Silberbach, M.1    Burkovski, A.2
  • 63
    • 24944447884 scopus 로고    scopus 로고
    • DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum
    • DOI 10.1016/j.jbiotec.2005.04.007, PII S0168165605001847
    • Silberbach M, Huser A, Kalinowski J, Puhler A, Walter B, Kramer R et al. (2005). DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum. J Biotechnol 119: 357-367. (Pubitemid 41330754)
    • (2005) Journal of Biotechnology , vol.119 , Issue.4 , pp. 357-367
    • Silberbach, M.1    Huser, A.2    Kalinowski, J.3    Puhler, A.4    Walter, B.5    Kramer, R.6    Burkovski, A.7
  • 64
    • 0034999677 scopus 로고    scopus 로고
    • The AmiE aliphatic amidase and AmiF formamidase of Helicobacter pylori: Natural evolution of two enzyme paralogues
    • DOI 10.1046/j.1365-2958.2001.02400.x
    • Skouloubris S, Labigne A, De Reuse H. (2001). The AmiE aliphatic amidase and AmiF formamidase of Helicobacter pylori: Natural evolution of two enzyme paralogues. Mol Microbiol 40: 596-609. (Pubitemid 32453113)
    • (2001) Molecular Microbiology , vol.40 , Issue.3 , pp. 596-609
    • Skouloubris, S.1    Labigne, A.2    De Reuse, H.3
  • 65
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical Bayes methods for assessing differential expression in microarray
    • Article 3
    • Smyth GK. (2004). Linear models and empirical Bayes methods for assessing differential expression in microarray. Stat Appl Genet Mol Biol 3: Article 3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 66
    • 0035803486 scopus 로고    scopus 로고
    • The structure of the negative transcriptional regulator NmrA reveals a structural superfamily which includes the short-chain dehydrogenase/reductases
    • DOI 10.1093/emboj/20.23.6619
    • Stammers DK, Ren J, Leslie K, Nichols CE, Lamb HK, Cocklin S et al. (2001). The structure of the negative transcriptional regulator NmrA reveals a structural superfamily which includes the short-chain dehydrogenase/ reductases. EMBO J 20: 6619-6626. (Pubitemid 33138150)
    • (2001) EMBO Journal , vol.20 , Issue.23 , pp. 6619-6626
    • Stammers, D.K.1    Ren, J.2    Leslie, K.3    Nichols, C.E.4    Lamb, H.K.5    Cocklin, S.6    Dodds, A.7    Hawkins, A.R.8
  • 67
    • 0035992362 scopus 로고    scopus 로고
    • Mechanisms of antibiotic resistance in bacterial biofilms
    • Stewart PS. (2002). Mechanisms of antibiotic resistance in bacterial biofilms. Int J Med Microbiol 292: 107-113. (Pubitemid 34842181)
    • (2002) International Journal of Medical Microbiology , vol.292 , Issue.2 , pp. 107-113
    • Stewart, P.S.1
  • 68
    • 39149100341 scopus 로고    scopus 로고
    • Physiological heterogeneity in biofilms
    • DOI 10.1038/nrmicro1838, PII NRMICRO1838
    • Stewart PS, Franklin MJ. (2008). Physiological heterogeneity in biofilms. Nat Rev Microbiol 6: 199-210. (Pubitemid 351256315)
    • (2008) Nature Reviews Microbiology , vol.6 , Issue.3 , pp. 199-210
    • Stewart, P.S.1    Franklin, M.J.2
  • 69
    • 0037337513 scopus 로고    scopus 로고
    • Gene expression profile of Campylobacter jejuni in response to growth temperature variation
    • DOI 10.1128/JB.185.6.2009-2016.2003
    • Stintzi A. (2003). Gene expression profile of Campylobacter jejuni in response to growth temperature variation. J Bacteriol 185: 2009-2016. (Pubitemid 36297902)
    • (2003) Journal of Bacteriology , vol.185 , Issue.6 , pp. 2009-2016
    • Stintzi, A.1
  • 71
    • 38849177346 scopus 로고    scopus 로고
    • Probing host pathogen crosstalk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages
    • Tailleux L, Waddell SJ, Pelizzola M, Mortellaro A, Withers M, Tanne A et al. (2008). Probing host pathogen crosstalk by transcriptional profiling of both Mycobacterium tuberculosis and infected human dendritic cells and macrophages. PLoS One 3: E1403.
    • (2008) PLoS One , vol.3
    • Tailleux, L.1    Waddell, S.J.2    Pelizzola, M.3    Mortellaro, A.4    Withers, M.5    Tanne, A.6
  • 73
    • 0036274748 scopus 로고    scopus 로고
    • An ABC-type, high-affinity urea permease identified in cyanobacteria
    • DOI 10.1046/j.1365-2958.2002.02778.x
    • Valladares A, Montesinos ML, Herrero A, Flores E. (2002). An ABC-type, high-affinity urea permease identified in cyanobacteria. Mol Microbiol 43: 703-715. (Pubitemid 34597264)
    • (2002) Molecular Microbiology , vol.43 , Issue.3 , pp. 703-715
    • Valladares, A.1    Montesinos, M.L.2    Herrero, A.3    Flores, E.4
  • 75
    • 64749098164 scopus 로고    scopus 로고
    • Analysis of variance components reveals the contribution of sample processing to transcript variation
    • Van der Veen D, Oliveira JM, Van den Berg WAM, de Graaff LH. (2009). Analysis of variance components reveals the contribution of sample processing to transcript variation. Appl Environ Microbiol 75: 2414-2422.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 2414-2422
    • Van Der Veen, D.1    Oliveira, J.M.2    Van Den Berg, W.A.M.3    De Graaff, L.H.4
  • 76
    • 23844440600 scopus 로고    scopus 로고
    • Influence of fusaric acid on phenazine-1-carboxamide synthesis and gene expression of Pseudomonas chlororaphis strain PCL1391
    • DOI 10.1099/mic.0.28063-0
    • Van Rij ET, Girard G, Lugtenberg BJJ, Bloemberg GV. (2005). Influence of fusaric acid on phenazine-1- carboxamide synthesis and gene expression of Pseudomonas chlororaphis strain PCL1391. Microbiology 151: 2805-2814. (Pubitemid 41149800)
    • (2005) Microbiology , vol.151 , Issue.8 , pp. 2805-2814
    • Van Rij, E.T.1    Girard, G.2    Lugtenberg, B.J.J.3    Bloemberg, G.V.4
  • 78
    • 1842474356 scopus 로고    scopus 로고
    • Two Δ9-stearic acid desaturases are required for Aspergillus nidulans growth and development
    • DOI 10.1016/j.fgb.2003.12.009, PII S1087184504000027
    • Wilson RA, Chang PK, Dobrzyn A, Ntambi JM, Zarnowski R, Keller NP. (2004). Two D9-stearic acid desaturases are required for Aspergillus nidulans growth and development. Fungal Genet Biol 41: 501-509. (Pubitemid 38429773)
    • (2004) Fungal Genetics and Biology , vol.41 , Issue.5 , pp. 501-509
    • Wilson, R.A.1    Chang, P.-K.2    Dobrzyn, A.3    Ntambi, J.M.4    Zarnowski, R.5    Keller, N.P.6
  • 79
    • 0031935478 scopus 로고    scopus 로고
    • NasFED proteins mediate assimilatory nitrate and nitrite transport in Klebsiella oxytoca (pneumoniae) M5al
    • Wu QT, Stewart V. (1998). NasFED proteins mediate assimilatory nitrate and nitrite transport in Klebsiella oxytoca (pneumoniae) M5al. J Bacteriol 180: 1311-1322. (Pubitemid 28119492)
    • (1998) Journal of Bacteriology , vol.180 , Issue.5 , pp. 1311-1322
    • Wu, Q.1    Stewart, V.2
  • 80
    • 0029787198 scopus 로고    scopus 로고
    • Molecular characterisation of formamidase from Methylophilus methylotrophus
    • Wyborn NR, Mills J, Williams SG, Jones CW. (1996). Molecular characterisation of formamidase from Methylophilus methylotrophus. Eur J Biochem 240: 314-322. (Pubitemid 26292736)
    • (1996) European Journal of Biochemistry , vol.240 , Issue.2 , pp. 314-322
    • Wyborn, N.R.1
  • 81
    • 43049156396 scopus 로고    scopus 로고
    • Aspergillus nidulans ChiA is a glycosylphosphatidylinositol (GPI)-anchored chitinase specifically localized at polarized growth sites
    • Yamazaki H, Tanaka A, Kaneko J, Ohta A, Horiuchi H. (2008). Aspergillus nidulans ChiA is a glycosylphosphatidylinositol (GPI)-anchored chitinase specifically localized at polarized growth sites. Fungal Genet Biol 45: 963-972.
    • (2008) Fungal Genet Biol , vol.45 , pp. 963-972
    • Yamazaki, H.1    Tanaka, A.2    Kaneko, J.3    Ohta, A.4    Horiuchi, H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.