Structural analysis of the fds operon encoding the NAD+-linked formate dehydrogenase of Ralstonia eutropha

Journal of Biological Chemistry

Volumn 273, Issue 41, 1998, Pages 26349-26360

  Oh, Jeong Il ^a,b   Bowien, Botho ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; FORMATE DEHYDROGENASE; MOLYBDENUM; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE (UBIQUINONE); REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE DEHYDROGENASE; TUNGSTEN;

AEROBIC BACTERIUM; AMINO TERMINAL SEQUENCE; ARTICLE; CONSENSUS SEQUENCE; ESCHERICHIA COLI; GENETIC TRANSCRIPTION; NONHUMAN; OPERON; PRIORITY JOURNAL; PROMOTER REGION; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; CUPRIAVIDUS NECATOR; DNA PRIMERS; ELECTRONS; FORMATE DEHYDROGENASES; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; MOLECULAR SEQUENCE DATA; NAD; OPERON; PROMOTER REGIONS (GENETICS); PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FUNGI; MYXOGASTRIA; RALSTONIA; WAUTERSIA EUTROPHA;

EID: 0032500616     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.273.41.26349     Document Type: Article

References (74)

1. Bowien, B., and Schlegel, H. G. (1981) Annu. Rev. Microbiol. 35, 405-452
2. Friedrich, C. G., Bowlen, B., and Friedrich, B. (1979) J. Gen. Microbiol. 115, 185-192
3. Bowien, B., Windhövel, U., Yoo, J.-G., Bednarski, R., and Kusian, B. (1990) FEMS Microbiol. Rev. 87, 445-450
4. Friedebold, J., and Bowien, B. (1993) J. Bacteriol. 175, 4719-4728
5. Friedebold, J., Mayer, F., Bill, E., Trautwein, A. X., and Bowien, B. (1995) Biol. Chem. Hoppe-Seyler 376, 561-568
6. Ferry, J. G. (1990) FBMS Microbiol. Rev. 87, 377-382
7. Popov, V. O., and Lamzin, V. S. (1994) Biochem. J. 301, 625-643
8. Bullock, W. O., Fernandez, J. M., and Short, J. M. (1987) BioTechniques 5, 376-378
9. Loenen, W. A. M., and Brammar, W. J. (1980) Gene (Amst.) 10, 249-259
10. Yanisch-Perron, C., Vieira, J., and Messing, J. (1985) Gene (Amst.) 33, 103-119
11. Kusian, B., Bednarski, R., Husemann, M., and Bowien, B. (1995) J. Bacteriol. 177, 4442-4450
12. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
13. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1988) Current Protocols in Molecular Biology, pp. 2.4.1-2.4.5, Greene Publishing Associates, New York
14. Devereux, J., Haeberli, P., and Smithies, O. (1984) Nucleic Acids Res. 12, 387-395
15. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) Nucleic Acids Res. 22, 4673-4680
16. Lawrence, C. E., Altschul, S. F., Boguski, M. S., Liu, J. S., Neuwald, A. F., and Wotton, J. C. (1993) Science 262, 208-213
17. Oelmüller, U., Krüger, N., Steinbüchel, A., and Friedrich, C. G. (1990) J. Microbiol. Methods 11, 73-84
18. Kyte, J., and Doolittle, R. F. (1982) J. Mol. Biol. 157, 105-132
19. Li, X.-L., Ljungdahl, L. G., and Gollin, D. J. (1996) GenBank/EMBL/DDBJ accession number U73807
20. Shuber, A. P., Orr, E. C., Recny, M. A., Schendel, P. F., May, H. D., Schauer, N. L., and Ferry, J. G. (1986) J. Biol. Chem. 261, 12942-12947
21. Zinoni, F., Birkmann, A., Stadtman, T. C., and Böck, A. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 4650-4654
22. Berg, B. L., Li, J., Heider, J., and Stewart, V. (1991) J. Biol. Chem. 266, 22380-22385
23. Abaibou, H., Pommier, J., Benoit, S., Giordano, G., and Mandrand-Berthelot, M.-A. (1995) J. Bacteriol. 177, 7141-7149
24. Bokranz, M., Gutmann, M., Körtner, C., Kojro, E., Fahrenholz, F., Lauterbach, F., and Kröger, A. (1991) Arch. Microbiol. 156, 119-128
25. Lenger, R., Herrmann, U., Gross, R., Simon, J., and Kröger, A. (1997) Eur. J. Biochem. 246, 646-651
26. Yamamoto, I., Saiki, T., Liu, S.-M., and Ljungdahl, L. G. (1983) J. Biol. Chem. 258, 1826-1832
27. Kletzin, A., and Adams, M. W. W. (1996) FEMS Microbiol. Rev. 18, 5-63
28. Hochheimer, A., Schmitz, R. A., Thauer, R. K., and Hedderich, R. (1995) GenBank/EMBL/DDBJ accession number X87969
29. Popov, V. O., Shumilin, I. A., Ustinnikova, T. B., Lamzin, V. S., and Egorov, T. A. (1990) Bioorg. Khimia (U. S. S. R.) 16, 324-335
30. Galkin, A., Kulakova, L., Tishkov, V., Esaki, N., and Soda, K. (1995) Appl. Microbiol. Biotechnol. 44, 479-483
31. Hollenberg, C. P., and Janowicz, Z. (1989) GenBank/EMBL/DDBJ accession number A06214
32. Allen, S. J., and Holbrook, J. J. (1995) Gene (Amst.) 162, 99-104
33. Colas des Francs-Small, C., Ambard-Bretteville, F., Small, I. D., and Rämy, R. (1993) Plant Physiol. 102, 1171-1177
34. Siddiqui, R. A., Warnecke-Eberz, U., Hengsberger, A., Schneider, B., Kostka, S., and Friedrich, B. (1993) J. Bacteriol. 175, 5867-5876
35. Pierson, D. E., and Campbell, A. (1990) J. Bacteriol. 172, 2194-2198
36. Bilous, P. T., Cole, S. T., Anderson, W. F., and Weiner, J. H. (1988) Mol. Microbiol. 2, 785-795
37. Krafft, T., Bokranz, M., Klimmek, O., Schröder, I., Fahrenholz, F., Kojro, E., and Kröger, A. (1992) Eur. J. Biochem. 206, 503-510
38. Méjean, V., Iobbi-Nivol, C., Lepelletier, M., Giordano, G., Chippaux, M., and Pascal, M.-C. (1994) Mol. Microbiol. 11, 1169-1179
39. Tran-Betcke, A., Warnecke, U., Böcker, C., Zabarosch, C., and Friedrich, B. (1990) J. Bacteriol. 172, 2920-2929
40. Weidner, U., Geier, S., Ptock, A., Friedrich, T., Leif, H., and Weiss, H. (1993) J. Mol. Biol. 233, 109-122
41. Runswick, M. J., Gennis, R. B., Fearnley, I. M., and Walker, J. E. (1989) Biochemistry 28, 9452-9459
42. Gladyshev, V. N., Khangulov, S. V., Axley, M. J., and Stadtman, T. C. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 7708-7711
43. Boyington, J. C., Gladyshev, V. N., Khangulov, S. V., Stadtman, T. C., and Sun, P. D. (1997) Science 275, 1305-1308
44. Barber, M. J., Siegel, L. M., Schauer, N. L., May, H. D., and Ferry, J. G. (1983) J. Biol. Chem. 258, 10839-10845
45. Hille, R. (1996) Chem. Rev. 96, 2757-2856
46. Axley, M. J., Böck, A., and Stadtman, T. C. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 8450-8454
47. Schindelin, H., Kisker, C., Hilton, J., Rajagopalan, K. V., and Rees, D. C. (1996) Science 272, 1615-1621
48. Gladyshev, V. N., Boyington, J. C., Khangulov, S. V., Grahame, D. A., Stadtman, T. C., and Sun, P. D. (1996) J. Biol. Chem. 271, 8095-8100
49. Leif, H., Sled, V. D., Ohnishi, T., Weiss, H., and Friedrich, T. (1995) Eur. J. Biochem, 230, 538-548
50. Khoroshilova, N., Popescu, C., Muenck, E., Beinert, H., and Kiley, P. J. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 6087-6092
51. Malki, S., Saimmaime, I., De Luca, G., Rousset, M., Dermoun, Z., and Belaich, J.-P. (1995) J. Bacteriol. 177, 2628-2636
52. Meyer, J., and Gagnon, J. (1991) Biochemistry 309, 3697-3704
53. Xu, X., Matsuno-Yagi, A., and Yagi, T. (1992) Arch. Biochem. Biophys. 196, 40-48
54. Preis, D., Weidner, U., Conzen, C., Azevedo, J. E., Nehls, U., Röhlen, D., van der Pas, J., Sackmann, U., Schneider, R., Werner, S., and Weiss, H. (1991) Biochim. Biophys. Acta 1090, 133-138
55. Schmitz, O., Boison, G., Hilscher, R., Hundeshagen, B., Zimmer, W., Lottspeich, F., and Bothe, H. (1995) Eur. J. Biochem. 233, 266-276
56. Fu, W., Drozdzewski, P. M., Morgan, T. V., Mortenson, L. E., Juszczak, A., Adams, M. W. W., He, S. H., Peck, H. D., DerVartanian, D. V., LeGall, J., and Johnson, M. K. (1993) Biochemistry 32, 4813-4819
57. Zambrano, I. C., Kowal, A. T., Mortenson, L. E., Adams, M. W. W., and Johnson, M. K. (1989) J. Biol. Chem. 264, 20974-20983
58. Matsubara, H., and Saeki, K. (1992) Adv. Inorg. Chem. 38, 223-280
59. Blasco, F., Iobbi, C., Giordano, G., Chippaux, M., and Bonnefoy, V. (1989) Mol. Gen. Genet. 218, 249-256
60. Blasco, F., Iobbi, C., Ratouchniak, J., Bonnefoy, V., and Chippaux, M. (1990) Mol. Gen. Genet. 222, 104-111
61. Walker, J. E. (1992) Q. Rev. Biophys. 25, 253-324
62. Xu, X., Matsuno-Yagi, A., and Yagi, T. (1991) Biochemistry 30, 6422-6428
63. Pilkington, S. J., Skehel, M., Gennis, R. B., and Walker, J. E. (1991) Biochemistry 30, 2166-2175
64. Wierenga, R. K., Terpstra, P., and Hol, W. G. J. (1986) J. Mol. Biol. 187, 101-107
65. Fearnley, I. M., and Walker, J. E. (1992)Biochim. Biophys. Acta 1140, 105-134
66. Xu, X., Matsuno-Yagi, A., and Yagi, T. (1991) Biochemistry 30, 8678-8684
67. Pilkington, S. J., and Walker, J. E. (1989) Biochemistry 28, 3257-3264
68. Yano, T., Sled, V. D., Ohnishi, T., and Yagi, T. (1994) Biochemistry 33, 494-499
69. Plunkett, G., Burland, V., Daniels, D. L., and Blattner, F. R. (1993) Nucleic Acids Res. 21, 3391-3398
70. Glaser, P., Danchin, A., Kunst, F., Zuber, P., and Nakano, M. M. (1995) J. Bacteriol. 177, 1112-1115
71. Mandrand-Berthelot, M.-A., Couchoux-Luthaud, G., Santini, C.-L., and Giordano, G. (1988) J. Gen. Microbiol. 134, 3129-3139
72. Stewart, V., Lin, J. T., and Berg, B. L. (1991) J. Bacteriol. 173, 4417-4423
73. Friedrich, B., and Schwartz, E. (1993) Annu. Rev. Microbiol. 47, 351-383
74. Harley, C. B., and Reynolds, R. P. (1987) Nucleic Acids Res. 15, 2343-2361