DNA microarray analysis of the nitrogen starvation response of Corynebacterium glutamicum

Journal of Biotechnology

Volumn 119, Issue 4, 2005, Pages 357-367

  Silberbach, Maike ^a   Hüser, Andrea ^b   Kalinowski, Jörn ^b   Pühler, Alfred ^b   Walter, Britta ^a   Krämer, Reinhard ^a   Burkovski, Andreas ^a  

^a UNIVERSITY OF COLOGNE   (Germany)

^b BIELEFELD UNIVERSITY   (Germany)

Author keywords

Corynebacterium; DNA microarrays; Nitrogen control; Nitrogen regulation; Transcriptome analyses

Indexed keywords

AMINO ACIDS; BACTERIA; BIOSYNTHESIS; BIOTECHNOLOGY; CELLS; NITROGEN; PROTEINS;

CORNYEBACTERIUM; DNA MICROARRAYS; NITROGEN CONTROL; NITROGEN REGULATION; TRANSCRIPTOME ANALYSIS;

DNA;

NITROGEN;

AMINO ACID SYNTHESIS; ARTICLE; BIOSYNTHESIS; CELL TRANSPORT; CORYNEBACTERIUM GLUTAMICUM; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC TRANSCRIPTION; METABOLISM; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; STARVATION; UNINDEXED SEQUENCE;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; CORYNEBACTERIUM GLUTAMICUM; GENE EXPRESSION REGULATION, BACTERIAL; NITROGEN; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEOME; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

BACTERIA (MICROORGANISMS); CORYNEBACTERIUM; CORYNEBACTERIUM GLUTAMICUM; PROKARYOTA;

EID: 24944447884     PISSN: 01681656     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbiotec.2005.04.007     Document Type: Article

References (41)

1. S. Abe, K. Takayama, and S. Kinoshita Taxonomical studies on glutamic acid-producing bacteria J. Gen. Microbiol. 13 1967 279 301
2. G. Beckers, L. Nolden, and A. Burkovski Glutamate synthase of Corynebacterium glutamicum is not essential for glutamate synthesis and is regulated by the nitrogen status Microbiology 147 2001 2961 2970
3. G. Beckers, A.K. Bendt, R. Krämer, and A. Burkovski Molecular identification of the urea uptake system and transcriptional analysis of urea transporter- and urease-encoding genes in Corynebacterium glutamicum J. Bacteriol. 186 2004 7645 7652
4. A.K. Bendt, G. Beckers, M. Silberbach, A. Wittmann, and A. Burkovski Utilization of creatinine as an alternative nitrogen source in Corynebacterium glutamicum Arch. Microbiol. 181 2004 443 450
5. E.R. Börmann, B.J. Eikmanns, and H. Sahm Molecular analysis of the Corynebacterium glutamicum gdh gene encoding glutamate dehydrogenase Mol. Microbiol. 6 1992 317 326
6. A. Burkovski I do it my way: regulation of ammonium uptake and ammonium assimilation in Corynebacterium glutamicum Arch. Microbiol. 179 2003 83 88
7. A. Burkovski Ammonium assimilation and nitrogen control in Corynebacterium glutamicum and its relatives: an example for new regulatory mechanisms in actinomycetes FEMS Microbiol. Rev. 27 2003 617 628
8. T. Conway, and G.K. Schoolnik Microarray expression profiling: capturing a genome-wide portrait of the transcriptome Mol. Microbiol. 47 2003 879 889
9. M. Dondrup, A. Goesmann, D. Bartels, J. Kalinowski, L. Krause, B. Linke, O. Rupp, A. Sczyrba, A. Pühler, and F. Meyer EMMA: a platform for consistent storage and efficient analysis of microarray data J. Biotechnol. 106 2003 135 146
10. R. Gerstmeir, V.F. Wendisch, S. Schnicke, H. Ruan, M. Farwick, D. Reinscheid, and B.J. Eikmanns Acetate metabolism and its regulation in Corynebacterium glutamicum J. Biotechnol. 104 2003 99 122
11. P. Gourdon, M. Raherimandimby, H. Dominguez, M. Cocaign-Bousquet, and N.D. Lindley Osmotic stress, glucose transport capacity and consequences for glutamate overproduction in Corynebacterium glutamicum J. Biotechnol. 104 2003 77 85
12. J.G. Hashimoto, A.S. Beadles-Bohling, and K.M. Wiren Comparison of RiboGreen and 18S rRNA quantitation for normalizing real-time RT-PCR expression analysis Biotechniques 36 2004 54 60
13. M. Hayashi, H. Mizogushi, N. Shiraishi, M. Obayashi, S. Nakagawa, J.-I. Imai, S. Watanabe, T. Ota, and M. Ikeda Transcriptome analysis of acetate metabolism in Corynebacterium glutamicum using a newly developed metabolic array Biosci. Biotechnol. Biochem. 66 2002 1337 1344
14. A.T. Hüser, A. Becker, I. Brune, M. Dondrup, J. Kalinowski, J. Plassmeier, A. Pühler, I. Wiesgräbe, and A. Tauch Development of a Corynebacterium glutamicum DNA microarray and validation by genome-wide expression profiling during growth with propionate as carbon source J. Biotechnol. 106 2003 269 286
15. T. Ishige, M. Krause, M. Bott, V.F. Wendisch, and H. Sahm The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses J. Bacteriol. 185 2003 4519 4529
16. M. Jakoby, M. Tesch, H. Sahm, R. Krämer, and A. Burkovski Isolation of the Corynebacterium glutamicum glnA gene encoding glutamine synthetase I FEMS Microbiol. Lett. 154 1997 81 88
17. M. Jakoby, R. Krämer, and A. Burkovski Nitrogen regulation in Corynebacterium glutamicum: isolation of genes involved and biochemical characterization of corresponding proteins FEMS Microbiol. Lett. 173 1999 303 310
18. M. Jakoby, L. Nolden, J. Meier-Wagner, R. Krämer, and A. Burkovski AmtR, a global repressor in the nitrogen regulation system of Corynebacterium glutamicum Mol. Microbiol. 37 2000 964 977
19. J. Kalinowski, B. Bathe, N. Bischoff, M. Bott, A. Burkovski, N. Dusch, L. Eggeling, B.J. Eikmanns, L. Gaigalat, A. Goesmann, M. Hartmann, K. Huthmacher, R. Krämer, B. Linke, A.C. McHardy, F. Meyer, B. Möckel, W. Pfefferle, A. Pühler, D. Rey, C. Rückert, H. Sahm, V.F. Wendisch, I. Wiegräbe, and A. Tauch The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of l-aspartate-derived amino acids and vitamins J. Biotechnol. 104 2003 5 25
20. H. Kase, and K. Nakayama Production of l-threonine by analog-resistant mutants Agric. Biol. Chem. 36 1972 1611 1621
21. S. Kinoshita, S. Udaka, and M. Shimono Amino acid fermentation. I. Production of l-glutamic acid by various microorganisms J. Gen. Appl. Microbiol. 3 1957 193 205
22. W. Kronemeyer, N. Peekhaus, R. Krämer, L. Eggeling, and H. Sahm Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum J. Bacteriol. 177 1995 1152 1158
23. C. Lange, D. Rittmann, V.F. Wendisch, M. Bott, and H. Sahm Global expression profiling and physiological characterization of Corynebacterium glutamicum grown in the presence of l-valine Appl. Environ. Microbiol. 69 2003 2521 2532
24. J. Meier-Wagner, L. Nolden, M. Jakoby, R. Siewe, R. Krämer, and A. Burkovski Multiplicity of ammonium uptake systems in Corynebacterium glutamicum: role of Amt and AmtB Microbiology 147 2001 135 143
25. S. Morbach, and R. Krämer Impact of transport processes in the osmotic response of Corynebacterium glutamicum J. Biotechnol. 104 2003 69 75
26. A. Muffler, S. Bettermann, M. Haushalter, A. Hörlein, U. Neveling, M. Schramm, and O. Sorgenfrei Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose J. Biotechnol. 98 2002 255 268
27. L. Nolden, G. Beckers, B. Möckel, W. Pfefferle, K.M. Nampoothiri, R. Krämer, and A. Burkovski Urease of Corynebacterium glutamicum: organization of corresponding genes and investigation of activity FEMS Microbiol. Lett. 189 2000 305 310
28. L. Nolden, G. Beckers, B. Möckel, W. Pfefferle, K.M. Nampoothiri, R. Krämer, and A. Burkovski Urease of Corynebacterium glutamicum: organization of corresponding genes and investigation of activity FEMS Microbiol. Lett. 189 2000 305 310
29. L. Nolden, M. Farwick, R. Krämer, and A. Burkovski Glutamine synthetases in Corynebacterium glutamicum: transcriptional control and regulation of activity FEMS Microbiol. Lett. 201 2001 91 98
30. L. Nolden, C.-E. Ngouoto-Nkili, A.K. Bendt, R. Krämer, and A. Burkovski Sensing nitrogen limitation in Corynebacterium glutamicum: the role of glnK and glnD Mol. Microbiol. 42 2001 1281 1295
31. H. Peter, A. Burkovski, and R. Krämer Isolation, characterization, and expression of the Corynebacterium glutamicum betP gene, encoding the transport system for the compatible solute glycine betaine J. Bacteriol. 178 1996 5229 5234
32. H. Peter, A. Bader, A. Burkovski, C. Lambert, and R. Krämer Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes Arch. Microbiol. 168 1997 143 151
33. R. Schmid, E.-M. Uhlemann, L. Nolden, G. Wersch, R. Hecker, T. Hermann, A. Marx, and A. Burkovski Response to nitrogen starvation in Corynebacterium glutamicum FEMS Microbiol. Lett. 187 2000 83 88
34. B. Schrumpf, A. Schwarzer, J. Kalinowski, A. Pühler, L. Eggeling, and H. Sahm A functionally split pathway for lysine synthesis in Corynebacterium glutamicum J. Bacteriol. 173 1991 4510 4516
35. A.A. Schulz, H.J. Collett, and S.J. Reid Regulation of glutamine synthetase and glutamate synthase in Corynebacterium glutamicum ATCC 13032 FEMS Microbiol. Lett. 205 2002 361 367
36. R.M. Siewe, B. Weil, A. Burkovski, B.J. Eikmanns, M. Eikmanns, and R. Krämer Functional and genetic characterization of the (methyl)ammonium uptake carrier of Corynebacterium glutamicum J. Biol. Chem. 271 1996 5398 5403
37. 15N nuclear magnetic resonance Appl. Environ. Microbiol. 65 1999 1099 1109
38. C. Trötschel, S. Kandirali, P. Diaz-Achirica, A. Meinhardt, S. Morbach, R. Krämer, and A. Burkovski GltS, the sodium-coupled l-glutamate uptake system of Corynebacterium glutamicum: identification of the corresponding gene and impact on l-glutamate production Appl. Microbiol. Biotechnol. 60 2003 738 742
39. A. Wehrmann, B. Phillipp, H. Sahm, and L. Eggeling Different modes of diaminopimelate synthesis and their role in cell wall integrity: a study with Corynebacterium glutamicum J. Bacteriol. 180 1998 3159 3165
40. V.F. Wendisch Genome-wide expression analysis in Corynebacterium glutamicum using DNA microarrays J. Biotechnol. 104 2003 273 286
41. D.P. Zimmer, E. Soupene, H.L. Lee, V.F. Wendisch, A.B. Khodursky, B.J. Peter, R.A. Bender, and S. Kustu Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defence against nitrogen limitation Proc. Natl. Acad. Sci. USA 97 2000 14674 14679