메뉴 건너뛰기




Volumn 46, Issue 12, 2011, Pages 5736-5753

Discovery of novel anti-inflammatory drug-like compounds by aligning in silico and in vivo screening: The nitroindazolinone chemotype

Author keywords

Anti inflammatory compound; Anti inflammatory database; Atom based quadratic indices; Computational screening; Cytotoxicity; In vivo anti inflammatory assay; Lead generation; Learning machine based QSAR; TOMOCOMD CARDD software; Zebrafish

Indexed keywords

2 BENZYL 1 METHYL 5 NITRO 1,2 DIHYDRO 3H INDAZOL 3 1; ANTIINFLAMMATORY AGENT; INDOMETACIN; UNCLASSIFIED DRUG; UNINDEXED DRUG; VA M1; VA1 15; VA2 27; VA5 10; VA5 12B; VA5 13H; VA5 14G; VA5 14J; VA5 15; VA5 5A; VA5 5B; VA5 5C; VA5 5E; VA5 6; VA5 8; VA5 8PRE; VA5 9A; VA6 17B; VA6 6B; VA7 38; VA8 38; VAM6; VATR 1; VATR 4; VATR 5; VAX 23;

EID: 80955140498     PISSN: 02235234     EISSN: 17683254     Source Type: Journal    
DOI: 10.1016/j.ejmech.2011.07.053     Document Type: Article
Times cited : (47)

References (116)
  • 2
    • 0141544947 scopus 로고    scopus 로고
    • Is There a Best Strategy for Drug Discovery?
    • P. Warne, and C. Page Is there a best strategy for drug discovery? Drug News Perspect. 16 2003 177 182 (Pubitemid 37314102)
    • (2003) Drug News and Perspectives , vol.16 , Issue.3 , pp. 177-182
    • Warne, P.1    Page, C.2
  • 3
    • 0037026928 scopus 로고    scopus 로고
    • High-throughput screening and quantitative structure-efficacy relationship models of potential displacer molecules for ion-exchange systems
    • C.B. Mazza, K. Rege, C.M. Breneman, N. Sukumar, J.S. Dordick, and S.M. Cramer High-throughput screening and quantitative structure-efficacy relationship models of potential displacer molecules for ion-exchange systems Biotechnol. Bioeng. 80 2002 60 72
    • (2002) Biotechnol. Bioeng. , vol.80 , pp. 60-72
    • Mazza, C.B.1    Rege, K.2    Breneman, C.M.3    Sukumar, N.4    Dordick, J.S.5    Cramer, S.M.6
  • 5
    • 0036835460 scopus 로고    scopus 로고
    • Integration of virtual and high-throughput screening
    • DOI 10.1038/nrd941
    • J. Bajorath Integration of virtual and high-throughput screening Nat. Rev. Drug Discov. 1 2002 882 894 (Pubitemid 37361583)
    • (2002) Nature Reviews Drug Discovery , vol.1 , Issue.11 , pp. 882-894
    • Bajorath, J.1
  • 7
    • 33745170023 scopus 로고    scopus 로고
    • Application of a mathematical topological pattern of antihistaminic activity for the selection of new drug candidates and pharmacology assays
    • DOI 10.1021/jm0580555
    • M.J. Duart, R. Garcia-Domenech, J. Galvez, P.A. Aleman, R.V. Martin-Algarra, and G.M. Anton-Fos Application of a mathematical topological pattern of antihistaminic activity for the selection of new drug candidates and pharmacology assays J. Med. Chem. 49 2006 3667 3673 (Pubitemid 43902472)
    • (2006) Journal of Medicinal Chemistry , vol.49 , Issue.12 , pp. 3667-3673
    • Duart, M.J.1    Garcia-Domenech, R.2    Galvez, J.3    Aleman, P.A.4    Martin-Algarra, R.V.5    Anton-Fos, G.M.6
  • 8
    • 13944263885 scopus 로고    scopus 로고
    • New potential antihistaminic compounds. Virtual combinatorial chemistry, computational screening, real synthesis, and pharmacological evaluation
    • DOI 10.1021/jm040877z
    • M.J. Duart, G.M. Anton-Fos, P.A. Aleman, J.B. Gay-Roig, M.E. Gonzalez-Rosende, J. Galvez, and R. Garcia-Domenech New potential antihistaminic compounds. virtual combinatorial chemistry, computational screening, real synthesis, and pharmacological evaluation J. Med. Chem. 48 2005 1260 1264 (Pubitemid 40270470)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.4 , pp. 1260-1264
    • Duart, M.J.1    Anton-Fos, G.M.2    Aleman, P.A.3    Gay-Roig, J.B.4    Gonzalez-Rosende, M.E.5    Galvez, J.6    Garcia-Domenech, R.7
  • 10
  • 11
    • 33847207834 scopus 로고    scopus 로고
    • Molecular similarity analysis in virtual screening: Foundations, limitations and novel approaches
    • H. Eckert, and J. Bajorath Molecular similarity analysis in virtual screening: foundations, limitations and novel approaches Drug Discov. Today 12 2007 225 236
    • (2007) Drug Discov. Today , vol.12 , pp. 225-236
    • Eckert, H.1    Bajorath, J.2
  • 13
    • 8844277864 scopus 로고    scopus 로고
    • version 1.0 is a preliminary experimental version; in future a professional version can be obtained upon request to Y. Marrero: yovanimp@uclv.edu.cu or ymarrero77@yahoo.esin, Central University of Las Villas, Santa Clara, Villa Clara
    • Y. Marrero-Ponce, V. Romero, TOMOCOMD-CARDD software. TOMOCOMD (TOpological MOlecular COMputational Design) for Windows, version 1.0 is a preliminary experimental version; in future a professional version can be obtained upon request to Y. Marrero: yovanimp@uclv.edu.cu or ymarrero77@yahoo.esin, Central University of Las Villas, Santa Clara, Villa Clara, 2002.
    • (2002) TOMOCOMD-CARDD Software. TOMOCOMD (TOpological MOlecular COMputational Design) for Windows
    • Marrero-Ponce, Y.1    Romero, V.2
  • 15
    • 0001833451 scopus 로고
    • Discriminant analysis for activity prediction
    • H. van de Waterbeemd, VCH Publishers Weinheim
    • H. van de Waterbeemd Discriminant analysis for activity prediction H. van de Waterbeemd, Chemometric Methods in Molecular Design 1995 VCH Publishers Weinheim 265 288
    • (1995) Chemometric Methods in Molecular Design , pp. 265-288
    • Van De Waterbeemd, H.1
  • 17
    • 10444231203 scopus 로고    scopus 로고
    • Predicting stability of Arc repressor mutants with protein stochastic moments
    • DOI 10.1016/j.bmc.2004.10.024, PII S0968089604008120
    • H. Gonzalez-Diaz, E. Uriarte, and R. Ramos de Armas Predicting stability of Arc repressor mutants with protein stochastic moments Bioorg. Med. Chem. 13 2005 323 331 (Pubitemid 39642916)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.2 , pp. 323-331
    • Gonzalez-Diaz, H.1    Uriarte, E.2    Ramos De Armas, R.3
  • 20
    • 3342932276 scopus 로고    scopus 로고
    • Total and local quadratic indices of the molecular pseudograph's atom adjacency matrix: Applications to the prediction of physical properties of organic compounds
    • Y. Marrero-Ponce Total and local quadratic indices of the molecular pseudograph's atom adjacency matrix: applications to the prediction of physical properties of organic compounds Molecules 8 2003 687 726
    • (2003) Molecules , vol.8 , pp. 687-726
    • Marrero-Ponce, Y.1
  • 21
    • 8844273256 scopus 로고    scopus 로고
    • Total and local (Atom and atom-type) molecular quadratic indices: Significance-interpretation, comparison to other molecular descriptors, and QSPR/QSAR applications
    • Y. Marrero-Ponce Total and local (Atom and atom-type) molecular quadratic indices: significance-interpretation, comparison to other molecular descriptors, and QSPR/QSAR applications Bioorg. Med. Chem. 12 2004 6351 6369
    • (2004) Bioorg. Med. Chem. , vol.12 , pp. 6351-6369
    • Marrero-Ponce, Y.1
  • 22
    • 10044274469 scopus 로고    scopus 로고
    • Linear indices of the "molecular pseudograph's atom adjacency matrix": Definition significance-interpretation, and application to QSAR analysis to flavone derivatives as HIV-1 integrase inhibitors
    • Y. Marrero Ponce Linear indices of the "molecular pseudograph's atom adjacency matrix": definition significance-interpretation, and application to QSAR analysis to flavone derivatives as HIV-1 integrase inhibitors J. Chem. Inf. Comput. Sci. 44 2004 2010 2026
    • (2004) J. Chem. Inf. Comput. Sci. , vol.44 , pp. 2010-2026
    • Marrero Ponce, Y.1
  • 23
    • 14844336963 scopus 로고    scopus 로고
    • Quadratic indices of the 'molecular pseudograph's atom adjacency matrix' and their stochastic forms: A novel approach for virtual screening and in silico discovery of new lead paramphistomicide drugs-like compounds
    • DOI 10.1016/j.theochem.2004.11.027
    • Y. Marrero-Ponce, A. Huesca-Guillen, and F. Ibarra-Velarde Quadratic indices of the "molecular pseudograph's atom adjacency matrix" and their stochastic forms: a novel approach for virtual screening and in silico discovery of new lead paramphistomicide drugs-like compounds J. Mol. Struct. (Theochem) 717 2005 67 79 (Pubitemid 40348639)
    • (2005) Journal of Molecular Structure: THEOCHEM , vol.717 , Issue.1-3 , pp. 67-79
    • Marrero-Ponce, Y.1    Huesca-Guillen, A.2    Ibarra-Velarde, F.3
  • 24
    • 80955163401 scopus 로고    scopus 로고
    • Novel 2D TOMOCOMD-CARDD descriptors: Atom-based stochastic and non-stochastic bilinear indices and their QSPR applications
    • 10.1007/s10910-10008-19389-10910
    • Y. Marrero-Ponce, F. Torrens, R. García-Domenech, S.E. Ortega-Broche, and V. Romero Zaldivar Novel 2D TOMOCOMD-CARDD descriptors: atom-based stochastic and non-stochastic bilinear indices and their QSPR applications J. Math. Chem. 2006 10.1007/s10910-10008-19389-10910
    • (2006) J. Math. Chem.
    • Marrero-Ponce, Y.1    Torrens, F.2    García-Domenech, R.3    Ortega-Broche, S.E.4    Romero Zaldivar, V.5
  • 27
    • 12844261737 scopus 로고    scopus 로고
    • Non-stochastic and stochastic linear indices of the 'molecular pseudograph's atom adjacency matrix': Application to 'in silico' studies for the rational discovery of new antimalarial compounds
    • DOI 10.1016/j.bmc.2004.11.008, PII S0968089604008934
    • Y. Marrero-Ponce, A. Montero-Torres, C.R. Zaldivar, M.I. Veitia, M.M. Perez, and R.N. Sanchez Non-stochastic and stochastic linear indices of the 'molecular pseudograph's atom adjacency matrix': application to 'in silico' studies for the rational discovery of new antimalarial compounds Bioorg. Med. Chem. 13 2005 1293 1304 (Pubitemid 40164613)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.4 , pp. 1293-1304
    • Marrero-Ponce, Y.1    Montero-Torres, A.2    Romero Zaldivar, C.3    Veitia Iyarreta, M.4    Mayon Perez, M.5    Garcia Sanchez, R.N.6
  • 28
    • 15244343496 scopus 로고    scopus 로고
    • Atom, atom-type, and total nonstochastic and stochastic quadratic fingerprints: A promising approach for modeling of antibacterial activity
    • DOI 10.1016/j.bmc.2005.02.015
    • Y. Marrero-Ponce, R. Medina-Marrero, F. Torrens, Y. Martinez, V. Romero-Zaldivar, and E.A. Castro Atom, atom-type, and total non-stochastic and stochastic quadratic fingerprints: a promising approach for modeling of antibacterial activity Bioorg. Med. Chem. 13 2005 2881 2899 (Pubitemid 40387497)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.8 , pp. 2881-2899
    • Marrero-Ponce, Y.1    Medina-Marrero, R.2    Torrens, F.3    Martinez, Y.4    Romero-Zaldivar, V.5    Castro, E.A.6
  • 29
    • 33644758439 scopus 로고    scopus 로고
    • Non-stochastic and stochastic linear indices of the molecular pseudograph's atom-adjacency matrix: A novel approach for computational in silico screening and rational selection of new lead antibacterial agents
    • DOI 10.1007/s00894-005-0024-8
    • Y. Marrero-Ponce, R.M. Marrero, F. Torrens, Y. Martinez, M.G. Bernal, V.R. Zaldivar, E.A. Castro, and R.G. Abalo Non-stochastic and stochastic linear indices of the molecular pseudograph's atom-adjacency matrix: a novel approach for computational in silico screening and "rational" selection of new lead antibacterial agents J. Mol. Model. 12 2006 255 271 (Pubitemid 43337195)
    • (2006) Journal of Molecular Modeling , vol.12 , Issue.3 , pp. 255-271
    • Marrero-Ponce, Y.1    Marrero, R.M.2    Torrens, F.3    Martinez, Y.4    Bernal, M.G.5    Zaldivar, V.R.6    Castro, E.A.7    Abalo, R.G.8
  • 32
    • 12344279256 scopus 로고    scopus 로고
    • Atom, atom-type, and total linear indices of the molecular pseudograph's atom adjacency matrix: Application to QSPR/QSAR studies of organic compounds
    • Y. Marrero-Ponce, J.A. Castillo-Garit, F. Torrens, V. Romero-Zaldivar, and E. Castro Atom, atom-type, and total linear indices of the "molecular pseudograph's atom adjacency matrix": application to QSPR/QSAR studies of organic compounds Molecules 9 2004 1100 1123 (Pubitemid 40132332)
    • (2004) Molecules , vol.9 , Issue.12 , pp. 1100-1123
    • Marrero Ponce, Y.1    Castillo Garit, J.A.2    Torrens, F.3    Romero Zaldivar, V.4    Castro, E.A.5
  • 33
    • 19944434385 scopus 로고    scopus 로고
    • Atom, atom-type and total molecular linear indices as a promising approach for bioorganic and medicinal chemistry: Theoretical and experimental assessment of a novel method for virtual screening and rational design of new lead anthelmintic
    • DOI 10.1016/j.bmc.2004.11.040, PII S0968089604009411
    • Y. Marrero-Ponce, J.A. Castillo-Garit, E. Olazabal, H.S. Serrano, A. Morales, N. Castanedo, F. Ibarra-Velarde, A. Huesca-Guillen, A.M. Sanchez, F. Torrens, and E.A. Castro Atom, atom-type and total molecular linear indices as a promising approach for bioorganic and medicinal chemistry: theoretical and experimental assessment of a novel method for virtual screening and rational design of new lead anthelmintic Bioorg. Med. Chem. 13 2005 1005 1020 (Pubitemid 40164584)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.4 , pp. 1005-1020
    • Marrero-Ponce, Y.1    Castillo-Garit, J.A.2    Olazabal, E.3    Serrano, H.S.4    Morales, A.5    Castanedo, N.6    Ibarra-Velarde, F.7    Huesca-Guillen, A.8    Sanchez, A.M.9    Torrens, F.10    Castro, E.A.11
  • 35
    • 17444372479 scopus 로고    scopus 로고
    • Prediction of intestinal epithelial transport of drug in (Caco-2) cell culture from molecular structure using in silico approaches during early drug discovery
    • Y. Marrero-Ponce, M.A. Cabrera, V. Romero-Zaldivar, M. Bermejo, D. Siverio, and F. Torrens Prediction of intestinal epithelial transport of drug in (Caco-2) cell culture from molecular structure using in silico approaches during early drug discovery Internet Electron J. Mol. Des 4 2005 124 150
    • (2005) Internet Electron J. Mol. des , vol.4 , pp. 124-150
    • Marrero-Ponce, Y.1    Cabrera, M.A.2    Romero-Zaldivar, V.3    Bermejo, M.4    Siverio, D.5    Torrens, F.6
  • 36
    • 3042720009 scopus 로고    scopus 로고
    • Total and local quadratic indices of the molecular pseudograph's atom adjacency matrix. Application to prediction of Caco-2 permeability of drugs
    • Y. Marrero-Ponce, M.A. Cabrera, V. Romero, E. Ofori, and L.A. Montero Total and local quadratic indices of the "molecular pseudograph's atom adjacency matrix". Application to prediction of Caco-2 permeability of drugs Int. J. Mol. Sci. 4 2003 512 536 (Pubitemid 38870293)
    • (2003) International Journal of Molecular Sciences , vol.4 , Issue.8-9 , pp. 512-536
    • Ponce, Y.M.1    Cabrera Perez, M.A.2    Zaldivar, V.R.3    Ofori, E.4    Montero, L.A.5
  • 41
    • 0031831906 scopus 로고    scopus 로고
    • Interleukin-1, interleukin-1 receptors and interleukin-1 receptor antagonist
    • C.A. Dinarello Interleukin-1, Interleukin-1 receptors and Interleukin-1 receptor antagonist Int. Rev. Immunol. 16 1998 457 499 (Pubitemid 28286181)
    • (1998) International Reviews of Immunology , vol.16 , Issue.5-6 , pp. 457-499
    • Dinarello, C.A.1
  • 42
    • 0029098769 scopus 로고
    • Natural resistance and nitric oxide
    • C. Nathan Natural resistance and nitric oxide Cell 82 1995 873 876
    • (1995) Cell , vol.82 , pp. 873-876
    • Nathan, C.1
  • 43
    • 0025997011 scopus 로고
    • Tumor necrosis factor (cachetin) in the biology of septic shock syndrome
    • K.J. Tracey Tumor necrosis factor (cachetin) in the biology of septic shock syndrome Circ. Shock 35 1991 123 128
    • (1991) Circ. Shock , vol.35 , pp. 123-128
    • Tracey, K.J.1
  • 44
  • 45
    • 0029846775 scopus 로고    scopus 로고
    • The inflammatory cytokines. New developments in the pathophysiology and treatment of septic shock
    • M.P. Glauser The inflammatory cytokines. New developments in the pathophysiology and treatment of septic shock Drugs 52 1996 9 17 (Pubitemid 26288480)
    • (1996) Drugs , vol.52 , Issue.SUPPL. 2 , pp. 9-17
    • Glauser, M.P.1
  • 48
    • 0025190943 scopus 로고
    • Pharmacology and pharmacokinetics of topical corticoid derivatives used for asthma therapy
    • W.A. Check, and M.A. Kaliner Pharmacology and pharmacokinetics of topical corticoid derivatives used for asthma therapy Am. Rev. Respir. Dis. 144 1990 44 51
    • (1990) Am. Rev. Respir. Dis. , vol.144 , pp. 44-51
    • Check, W.A.1    Kaliner, M.A.2
  • 49
    • 0026636419 scopus 로고
    • Inhaled corticoids: Benefit and risks
    • D.M. Geddes Inhaled corticoids: benefit and risks Thorax 47 1992 404 407
    • (1992) Thorax , vol.47 , pp. 404-407
    • Geddes, D.M.1
  • 51
    • 0036810356 scopus 로고    scopus 로고
    • Mechanisms involved in the side effects of glucocorticoids
    • DOI 10.1016/S0163-7258(02)00297-8, PII S0163725802002978
    • H. Schcke, W.D. Dcke, and K. Asadullah Mechanisms involved in the side effects of glucocorticoids Pharmacol. Ther. 96 2002 23 43 (Pubitemid 35346616)
    • (2002) Pharmacology and Therapeutics , vol.96 , Issue.1 , pp. 23-43
    • Schacke, H.1    Docke, W.-D.2    Asadullah, K.3
  • 52
    • 0043031147 scopus 로고    scopus 로고
    • Assessment of non-steroidal anti-inflammatory drug (NSAID) damage in the human gastrointestinal tract
    • DOI 10.1046/j.1365-2125.2003.01934.x
    • M.W. James, and C.J. Hawkey Assessment of non-steroidal anti-inflammatory drug (NSAID) damage in the human gastrointestinal tract Br. J. Clin. Pharmacol. 56 2003 146 155 (Pubitemid 36981430)
    • (2003) British Journal of Clinical Pharmacology , vol.56 , Issue.2 , pp. 146-155
    • James, M.W.1    Hawkey, C.J.2
  • 55
    • 35148898451 scopus 로고    scopus 로고
    • Guidance Document on the Validation of Quantitative Structure-Activity Relationship [QSAR] Models
    • Paris
    • OECD Guidance Document on the Validation of Quantitative Structure-Activity Relationship [QSAR] Models OECD Environment Health and Safety Publication, Series on testing and assessment vol. 69 2007 http://www.oecd.org/ dataoecd/55/35/38130292.pdf Paris
    • (2007) OECD Environment Health and Safety Publication, Series on Testing and Assessment , vol.69
    • Oecd1
  • 57
    • 0035657098 scopus 로고    scopus 로고
    • The art and design of genetic screens: Zebrafish
    • DOI 10.1038/35103567
    • E.E. Patton, and L.I. Zon The art and design of genetic screens: zebrafish Nat. Rev. Genet. 2 2001 956 966 (Pubitemid 33691092)
    • (2001) Nature Reviews Genetics , vol.2 , Issue.12 , pp. 956-966
    • Patton, E.E.1    Zon, L.I.2
  • 58
    • 12144273121 scopus 로고    scopus 로고
    • In vivo drug discovery in the zebrafish
    • DOI 10.1038/nrd1606
    • L.I. Zon, and R.T. Peterson In vivo drug discovery in the zebrafish Nat. Rev. Drug Discov. 4 2005 35 44 (Pubitemid 40109588)
    • (2005) Nature Reviews Drug Discovery , vol.4 , Issue.1 , pp. 35-44
    • Zon, L.I.1    Peterson, R.T.2
  • 60
    • 1842684987 scopus 로고    scopus 로고
    • The use of zebrafish to understand immunity
    • DOI 10.1016/S1074-7613(04)00084-6, PII S1074761304000846
    • N.S. Trede, D.M. Langenau, D. Traver, A.T. Look, and L.I. Zon The use of zebrafish to understand immunity Immunity 20 2004 367 379 (Pubitemid 38482116)
    • (2004) Immunity , vol.20 , Issue.4 , pp. 367-379
    • Trede, N.S.1    Langenau, D.M.2    Traver, D.3    Look, A.T.4    Zon, L.I.5
  • 61
    • 17144367704 scopus 로고    scopus 로고
    • The zebrafish: A new model of T-cell and thymic development
    • DOI 10.1038/nri1590
    • D.M. Langenau, and L.I. Zon The zebrafish: a new model of T-cell and thymic development Nat. Rev. Immunol. 5 2005 307 317 (Pubitemid 40516156)
    • (2005) Nature Reviews Immunology , vol.5 , Issue.4 , pp. 307-317
    • Langenau, D.M.1    Zon, L.I.2
  • 62
    • 33845494471 scopus 로고    scopus 로고
    • Atransgenic zebrafish model of neutrophilic inflammation
    • DOI 10.1182/blood-2006-05-024075
    • S.A. Renshaw, S.A. Loynes, D.M.I. Trushell, S. Elworthy, P.W. Ingham, and M.K.B. Whyte A transgenic zebrafish model of neutrophilic inflammation Blood 108 2006 3976 3978 (Pubitemid 44913264)
    • (2006) Blood , vol.108 , Issue.13 , pp. 3976-3978
    • Renshaw, S.A.1    Loynes, C.A.2    Trushell, D.M.I.3    Elworthy, S.4    Ingham, P.W.5    Whyte, M.K.B.6
  • 64
    • 0036933967 scopus 로고    scopus 로고
    • Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection
    • A. Golbraikh, and A. Tropsha Predictive QSAR modeling based on diversity sampling of experimental datasets for the training and test set selection Mol. Divers. 5 2002 231 243
    • (2002) Mol. Divers. , vol.5 , pp. 231-243
    • Golbraikh, A.1    Tropsha, A.2
  • 66
    • 0003601534 scopus 로고    scopus 로고
    • Chapman and Hall
    • The Merck Index 1996 Chapman and Hall
    • (1996) The Merck Index
  • 68
    • 33845294998 scopus 로고    scopus 로고
    • Indices of the Molecular Pseudograph's Atom-Adjacency Matrix: A Novel Approach for Computational in silico Screening and "rational" Selection of New Lead Antibacterial Agents
    • Y. Marrero-Ponce, R.M. Marrero, F. Torrens, Y. Martinez, M.G. Bernal, V.R. Zaldivar, E.A. Castro, R.G. Abalo, Non-Stochastic, and Stochastic Linear Indices of the Molecular Pseudograph's Atom-Adjacency Matrix: a Novel Approach for Computational in silico Screening and "Rational" Selection of New Lead Antibacterial Agents J. Mol. Model 2005 1 17
    • (2005) J. Mol. Model , pp. 1-17
    • Marrero-Ponce, Y.1    Marrero, R.M.2    Torrens, F.3    Martinez, Y.4    Bernal, M.G.5    Zaldivar, V.R.6    Castro, E.A.7    Abalo, R.G.8    Non-Stochastic9    Linear, S.10
  • 69
    • 0036589086 scopus 로고    scopus 로고
    • Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. 1. Theory of the novel 3D molecular descriptors
    • DOI 10.1021/ci015504a
    • V. Consonni, R. Todeschini, and M. Pavan Structure/response correlations and similarity/diversity analysis by GETAWAY descriptors. 1. Theory of the novel 3D molecular descriptors J. Chem. Inf. Comput. Sci. 42 2002 682 692 (Pubitemid 35355277)
    • (2002) Journal of Chemical Information and Computer Sciences , vol.42 , Issue.3 , pp. 682-692
    • Consonni, V.1    Todeschini, R.2    Pavan, M.3
  • 70
    • 0033931867 scopus 로고    scopus 로고
    • Assessing the accuracy of prediction algorithms for classification: An overview
    • P. Baldi, S. Brunak, Y. Chauvin, C.A. Andersen, and H. Nielsen Assessing the accuracy of prediction algorithms for classification: an overview Bioinformatics 16 2000 412 424 (Pubitemid 30487963)
    • (2000) Bioinformatics , vol.16 , Issue.5 , pp. 412-424
    • Baldi, P.1    Brunak, S.2    Chauvin, Y.3    Andersen, C.A.F.4    Nielsen, H.5
  • 71
    • 34250628103 scopus 로고    scopus 로고
    • Principles of QSAR models validation: Internal and external
    • DOI 10.1002/qsar.200610151
    • P. Gramatica Principles of QSAR models validation: internal and external QSAR QSAR Comb. Sci. 26 2007 694 701 (Pubitemid 46932857)
    • (2007) QSAR and Combinatorial Science , vol.26 , Issue.5 , pp. 694-701
    • Gramatica, P.1
  • 72
    • 0043132440 scopus 로고    scopus 로고
    • Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs
    • L. Eriksson, J. Jaworska, A.P. Worth, M.T. Cronin, R.M. McDowell, and P. Gramatica Methods for reliability and uncertainty assessment and for applicability evaluations of classification- and regression-based QSARs Environ. Health Perspect. 111 2003 1361 1375 (Pubitemid 37021142)
    • (2003) Environmental Health Perspectives , vol.111 , Issue.10 , pp. 1361-1375
    • Eriksson, L.1    Jaworska, J.2    Worth, A.P.3    Cronin, M.T.D.4    McDowell, R.M.5    Gramatica, P.6
  • 74
    • 26944468691 scopus 로고    scopus 로고
    • Statistically validated QSARs, based on theoretical descriptors, for modeling aquatic toxicity of organic chemicals in Pimephales promelas (fathead minnow)
    • DOI 10.1021/ci0502121
    • E. Papa, F. Villa, and P. Gramatica Statistically validated QSARs, based on theoretical descriptors, for modeling aquatic toxicity of organic chemicals in Pimephales promelas (fathead minnow) J. Chem. Inf. Model. 45 2005 1256 1266 (Pubitemid 41476009)
    • (2005) Journal of Chemical Information and Modeling , vol.45 , Issue.5 , pp. 1256-1266
    • Papa, E.1    Villa, F.2    Gramatica, P.3
  • 77
    • 34547244817 scopus 로고    scopus 로고
    • A new computer program for QSAR-analysis: ARTE-QSAR
    • DOI 10.1002/jcc.20664
    • S. van Damme, and P. Bultinck Software news and update a new computer program for QSAR-analysis: ARTE-QSAR J. Comput. Chem. 28 2007 1924 1928 (Pubitemid 47153619)
    • (2007) Journal of Computational Chemistry , vol.28 , Issue.11 , pp. 1924-1928
    • Van Damme, S.1    Bultinck, P.2
  • 78
    • 43049117481 scopus 로고    scopus 로고
    • Prediction of blood-brain partitioning: A model based on ab initio calculated quantum chemical descriptors
    • S. Van Damme, W. Langenaeker, and P. Bultinck Prediction of blood-brain partitioning: a model based on ab initio calculated quantum chemical descriptors J. Mol. Graphics Modell. 26 2008 1223 1236
    • (2008) J. Mol. Graphics Modell. , vol.26 , pp. 1223-1236
    • Van Damme, S.1    Langenaeker, W.2    Bultinck, P.3
  • 79
    • 0038121705 scopus 로고    scopus 로고
    • Development and validation of nearest-neighbor QSPR models of metabolic stability of drug candidates
    • DOI 10.1021/jm020491t
    • M. Shen, Y. Xiao, A. Golbraikh, V.K. Gombar, and A. Tropsha Development and validation of k-nearest-neighbor QSPR models of metabolic stability of drug candidates J. Med. Chem. 46 2003 3013 3020 (Pubitemid 36775924)
    • (2003) Journal of Medicinal Chemistry , vol.46 , Issue.14 , pp. 3013-3020
    • Shen, M.1    Xiao, Y.2    Golbraikh, A.3    Gombar, V.K.4    Tropsha, A.5
  • 81
    • 0036708531 scopus 로고    scopus 로고
    • In silico studies toward the discovery of new anti-HIV nucleoside compounds with the use of TOPS-MODE and 2D/3D connectivity indices. 1. Pyrimidyl derivatives
    • DOI 10.1021/ci0255331
    • E. Estrada, S. Vilar, E. Uriarte, and Y. Gutierrez In silico studies toward the discovery of new anti-HIV nucleoside compounds with the use of TOPS-MODE and 2D/3D Connectivity indices. 1. pyrimidyl derivatives J. Chem. Inf. Comput. Sci. 42 2002 1194 1203 (Pubitemid 35360305)
    • (2002) Journal of Chemical Information and Computer Sciences , vol.42 , Issue.5 , pp. 1194-1203
    • Estrada, E.1    Vilar, S.2    Uriarte, E.3    Gutierrez, Y.4
  • 83
    • 0003156180 scopus 로고
    • The heterocyclization of n′, n′-disubstituted 2-halobenzohydrazides to 1,1-disubstituted indazol-3-ylioxides
    • V.J. Arán, J.L. Asensio, J.R. Ruiz, and M. Stud The heterocyclization of n′, n′-disubstituted 2-halobenzohydrazides to 1,1-disubstituted indazol-3-ylioxides J. Chem. Res. (S) 218 1993 1322 1345
    • (1993) J. Chem. Res. (S) , vol.218 , pp. 1322-1345
    • Arán, V.J.1    Asensio, J.L.2    Ruiz, J.R.3    Stud, M.4
  • 85
    • 37049088603 scopus 로고
    • Reactivity of 1,1-disubstituted indazol-3-yliooxides: Synthesis of some substituted indazolols and indazolinones
    • V.J. Arán, J.L. Asensio, J.R. Ruiz, and M. Stud Reactivity of 1,1-disubstituted indazol-3-yliooxides: synthesis of some substituted indazolols and indazolinones J. Chem. Soc. Perkin Trans. 1 1993 1119 1127
    • (1993) J. Chem. Soc. Perkin Trans. , vol.1 , pp. 1119-1127
    • Arán, V.J.1    Asensio, J.L.2    Ruiz, J.R.3    Stud, M.4
  • 89
    • 84988052081 scopus 로고
    • Synthesis of quaternary indoxyl derivatives by intramolecular cyclization of some substituted acetophenone
    • J.R. Ruiz, V.J. Arán, J.L. Asensio, M. Flores, and M. Stud Synthesis of quaternary indoxyl derivatives by intramolecular cyclization of some substituted acetophenone Liebigs Ann. Chem. 1994 679 684
    • (1994) Liebigs Ann. Chem. , pp. 679-684
    • Ruiz, J.R.1    Arán, V.J.2    Asensio, J.L.3    Flores, M.4    Stud, M.5
  • 91
    • 0036009488 scopus 로고    scopus 로고
    • Synthesis of quinoxaline derivatives from substituted acetanilides through intramolecular quaternization reactions
    • S. de Castro, R. Chicharro, and V.J. Arán Synthesis of quinoxaline derivatives from substituted acetanilides through intramolecular quaternization reactions J. Chem. Soc. Perkin Trans. 2002 790 802 (Pubitemid 35188347)
    • (2002) Journal of the Chemical Society. Perkin Transactions 1 , Issue.6 , pp. 790-802
    • De Castro, S.1    Chicharro, R.2    Aran, V.J.3
  • 92
    • 0038391514 scopus 로고    scopus 로고
    • Synthesis of tri- and tetracyclic condensed quinoxalin-2-ones fused across the C-3-N-4 bond
    • R. Chicharro, S. de Castro, J.L. Reino, and V.J. Arán Synthesis of tri- and tetracyclic condensed quinoxalin-2-ones fused across the C-3-N-4 bond Eur. J. Org. Chem. 2003 2314 2326
    • (2003) Eur. J. Org. Chem. , pp. 2314-2326
    • Chicharro, R.1    De Castro, S.2    Reino, J.L.3    Arán, V.J.4
  • 97
    • 0025756940 scopus 로고
    • Indazolinones, a new series of redox-active 5-lipoxygenase inhibitors with built-in selectivity and oral activity
    • P. Bruneau, and C. Delvare Indazolinones, a new series of redox-active 5-lipoxygenase inhibitors with built-in selectivity and oral activity J. Med. Chem. 34 1991 1028 1036
    • (1991) J. Med. Chem. , vol.34 , pp. 1028-1036
    • Bruneau, P.1    Delvare, C.2
  • 98
    • 34548606295 scopus 로고    scopus 로고
    • Recent progress in protein subcellular location prediction
    • DOI 10.1016/j.ab.2007.07.006, PII S0003269707004423
    • K.-C. Chou, and H.-B. Shen Recent progress in protein subcellular location prediction Anal. Biochem. 370 2007 1 16 (Pubitemid 47404494)
    • (2007) Analytical Biochemistry , vol.370 , Issue.1 , pp. 1-16
    • Chou, K.-C.1    Shen, H.-B.2
  • 101
    • 0027692921 scopus 로고
    • Traditional topological indices vs electronic, geometrical, and combined molecular descriptors in QSAR/QSPR research
    • A.R. Katritzky, and E.V. Gordeeva Traditional topological indices vs electronic, geometrical, and combined molecular descriptors in QSAR/QSPR research J. Chem. Inf. Comput. Sci. 33 1993 835 857
    • (1993) J. Chem. Inf. Comput. Sci. , vol.33 , pp. 835-857
    • Katritzky, A.R.1    Gordeeva, E.V.2
  • 104
    • 12344287241 scopus 로고    scopus 로고
    • Protein quadratic indices of the macromolecular pseudograph's -carbon atom adjacency matrix. 1. Prediction of Arc repressor alanine-mutant's stability
    • Y. Marrero-Ponce, R. Medina, E.A. Castro, R. de Armas, H. González, V. Romero, and F. Torrens Protein quadratic indices of the "macromolecular pseudograph's R-carbon atom adjacency matrix". 1. Prediction of Arc repressor alanine-mutant's stability Molecules 9 2004 1124 1147 (Pubitemid 40132333)
    • (2004) Molecules , vol.9 , Issue.12 , pp. 1124-1147
    • Marrero Ponce, Y.1    Medina Marrero, R.2    Castro, E.A.3    Ramos De Armas, R.4    Gonzalez Diaz, H.5    Romero Zaldivar, V.6    Torrens, F.7
  • 105
    • 15244339303 scopus 로고    scopus 로고
    • Protein linear indices of the 'macromolecular pseudograph -carbon atom adjacency matrix' in bioinformatics. Part 1: Prediction of protein stability effects of a complete set of alanine substitutions in Arc repressor
    • DOI 10.1016/j.bmc.2005.01.062
    • Y. Marrero-Ponce, R. Medina-Marrero, J.A. Castillo-Garit, V. Romero-Zaldivar, F. Torrens, and E.A. Castro Protein linear indices of the "macromolecular pseudograph's R-Carbon atom adjacency matrix" in bioinformatics. 1. Prediction of protein stability effects of a complete set of alanine substitutions in Arc repressor Bioorg. Med. Chem. 13 2005 3003 3015 (Pubitemid 40387508)
    • (2005) Bioorganic and Medicinal Chemistry , vol.13 , Issue.8 , pp. 3003-3015
    • Marrero-Ponce, Y.1    Medina-Marrero, R.2    Castillo-Garit, J.A.3    Romero-Zaldivar, V.4    Torrens, F.5    Castro, E.A.6
  • 106
    • 8844228418 scopus 로고    scopus 로고
    • Graph theoretically formulated electronic-structure theory
    • D.J. Klein Graph theoretically formulated electronic-structure theory Internet electron J. Mol. Des. 2 2003 814 834
    • (2003) Internet Electron J. Mol. Des. , vol.2 , pp. 814-834
    • Klein, D.J.1
  • 109
    • 0034535091 scopus 로고    scopus 로고
    • Detection of circulating malignant cells by RT-PCR in long-term clinically disease-free I stage melanoma patients
    • A. Baldi, E. Dragonetti, T. Battista, A.M. Groeger, V. Esposito, G. Baldi, and D. Santini Detection of circulating malignant cells by RT-PCR in long-term clinically disease-free i stage melanoma patients Anticancer Res. 20 2000 3923 3928 (Pubitemid 32002299)
    • (2000) Anticancer Research , vol.20 , Issue.5 , pp. 3923-3928
    • Baldi, A.1    Dragonetti, E.2    Battista, T.3    Groeger, A.M.4    Esposito, V.5    Baldi, G.6    Santini, D.7
  • 110
    • 0035704743 scopus 로고    scopus 로고
    • Generating transparent zebrafish: A refined method to improve detection of gene expression during embryonic development
    • J. Karlsson, J. von Hofsten, and P. Olsson Generating transparent zebrafish: a refined method to improve detection of gene expression during embryonic development Mar. Biotechnol. 3 2001 522 527 (Pubitemid 34115368)
    • (2001) Marine Biotechnology , vol.3 , Issue.6 , pp. 522-527
    • Karlsson, J.1    Von Hofsten, J.2    Olsson, P.-E.3
  • 112
    • 0029084996 scopus 로고
    • Effects of cyclosporin A and FK506 on nitric oxide and tetrahydrobiopterin synthesis in bacterial lipopolysaccharide-treated J774 macrophages
    • Y. Hattori, and N. Nakanishi Effects of cyclosporin A and FK506 on nitric oxide and tetrahydrobiopterin synthesis in bacterial lipopolysaccharide-treated J774 macrophages Cell. Immunol. 165 1995 7 11
    • (1995) Cell. Immunol. , vol.165 , pp. 7-11
    • Hattori, Y.1    Nakanishi, N.2
  • 113
    • 0001039559 scopus 로고
    • Cutaneous models of inflammation for the evaluation of topical and systemic pharmacological agents
    • J. Spector, N. Back, Alan R. Liss New York
    • J.M. Young, and L.M. De Young Cutaneous models of inflammation for the evaluation of topical and systemic pharmacological agents J. Spector, N. Back, Pharmacological Methods in the Control of Inflammation 1989 Alan R. Liss New York 215 231
    • (1989) Pharmacological Methods in the Control of Inflammation , pp. 215-231
    • Young, J.M.1    De Young, L.M.2
  • 114
    • 0027512393 scopus 로고
    • Study of the antioedema activity of some seaweed and sponge extracts from the Mediterranean coast in mice
    • M. Payá, M. Ferrándiz, M.J. Sanz, G. Bustos, R. Blasco, J.L. Ríos, and M.J. Alcaraz Study of the antioedema activity of some seaweed and sponge extracts from the Mediterranean coast in mice Phytother. Res. 7 1993 159 162 (Pubitemid 23106470)
    • (1993) Phytotherapy Research , vol.7 , Issue.2 , pp. 159-162
    • Paya, M.1    Ferrandiz, M.L.2    Sanz, M.J.3    Bustos, G.4    Blasco, R.5    Rios, J.L.6    Alcaraz, M.J.7
  • 116
    • 0024498731 scopus 로고
    • Edema and cell infiltration in the phorbol ester-treated mouse ear are temporally separate and can be differentially modulated by pharmacologic agents
    • DOI 10.1007/BF01967298
    • L.M. De Young, J.B. Kheifets, S.J. Ballaron, and J.M. Young Edema and cell infiltration in the phorbol ester-treated mouse ear are temporally separate and can be differentially modulated by pharmacologic agents Agents Actions 26 1989 335 341 (Pubitemid 19078128)
    • (1989) Agents and Actions , vol.26 , Issue.3-4 , pp. 335-341
    • De Young, L.M.1    Kheifets, J.B.2    Ballaron, S.J.3    Young, J.M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.