-
1
-
-
0033631450
-
Molecular symmetry as an aid to geometry determination in ligand protein complexes
-
Al-Hashimi, H. M., Bolon, P. J., and Prestegard, J. H. 2000. Molecular symmetry as an aid to geometry determination in ligand protein complexes. J. Magn. Reson. 142, 153-158.
-
(2000)
J. Magn. Reson.
, vol.142
, pp. 153-158
-
-
Al-Hashimi, H.M.1
Bolon, P.J.2
Prestegard, J.H.3
-
2
-
-
66149097825
-
Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA
-
Bardiaux, B., Bernard, A., Rieping, W., et al. 2009. Influence of different assignment conditions on the determination of symmetric homodimeric structures with ARIA. Proteins 75, 569-585.
-
(2009)
Proteins
, vol.75
, pp. 569-585
-
-
Bardiaux, B.1
Bernard, A.2
Rieping, W.3
-
3
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M., Westbrook, J., Feng, Z., et al. 2000. The Protein Data Bank. Nucleic Acids Res. 28, 235-242. (Pubitemid 30047768)
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
0034725409
-
Determination of the relative orientation of the two halves of the domain-swapped dimer of cyanovirin-N in solution using dipolar couplings and rigid body minimization
-
DOI 10.1021/ja000858o
-
Bewley, C. A., and Clore, G. M. 2000. Determination of the relative orientation of the two halves of the domain-swapped dimer of cyanovirin-N in solution using dipolar couplings and rigid body minimization. J. Am. Chem. Soc. 122, 6009-6016. (Pubitemid 30451105)
-
(2000)
Journal of the American Chemical Society
, vol.122
, Issue.25
, pp. 6009-6016
-
-
Bewley, C.A.1
Clore, G.M.2
-
5
-
-
0141569110
-
A protein contortionist: Core mutations of GB1 that induce dimerization and domain swapping
-
DOI 10.1016/S0022-2836(03)00928-8
-
Byeon, I.-J. L., Louis, J. M., and Gronenborn, A. M. 2003. A protein contortionist: core mutations of GB1 that induce dimerization and domain swapping. J. Mol. Biol. 333, 141-152. (Pubitemid 37153271)
-
(2003)
Journal of Molecular Biology
, vol.333
, Issue.1
, pp. 141-152
-
-
Byeon, I.-J.L.1
Louis, J.M.2
Gronenborn, A.M.3
-
6
-
-
62649153772
-
Computational structure-based redesign of enzyme activity
-
Chen, C.-Y., Georgiev, I., Anderson, A. C., et al. 2009. Computational structure-based redesign of enzyme activity. Proc. Natl. Acad. Sci. USA 106, 3764-3769.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3764-3769
-
-
Chen, C.-Y.1
Georgiev, I.2
Anderson, A.C.3
-
7
-
-
67650473269
-
Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints
-
Donald, B. R., and Martin, J. 2009. Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints. Prog. Nucl. Magn. Reson. Spectrosc. 55, 101-127.
-
(2009)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.55
, pp. 101-127
-
-
Donald, B.R.1
Martin, J.2
-
8
-
-
77956377719
-
Predicting resistance mutations using protein design algorithms
-
Frey, K. M., Georgiev, I., Donald, B. R., et al. 2010. Predicting resistance mutations using protein design algorithms. Proc. Natl. Acad. Sci. USA 107, 13707-13712.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 13707-13712
-
-
Frey, K.M.1
Georgiev, I.2
Donald, B.R.3
-
10
-
-
0001798952
-
Arrangements
-
Goodman, J. E., and O'Rourke, J., eds, 2nd ed. CRC Press, Boca Raton, FL
-
Halperin, D. 1997. Arrangements, 529-562. In Goodman, J. E., and O'Rourke, J., eds. Handbook of Discrete and Computational Geometry, 2nd ed. CRC Press, Boca Raton, FL.
-
(1997)
Handbook of Discrete and Computational Geometry
, pp. 529-562
-
-
Halperin, D.1
-
11
-
-
84896756067
-
Two-Dimensional Arrangements in CGAL and Adaptive Point Location for Parametric Curves
-
Algorithm Engineering
-
Hanniel, I., and Halperin, D. 2000. Two-dimensional arrangements in CGAL and adaptive point location for parametric curves. Lect. Notes Comput. Sci. 1982, 171-182. (Pubitemid 33322471)
-
(2001)
Lect. Notes Comput. Sci.
, Issue.1982
, pp. 171-182
-
-
Hanniel, I.1
Halperin, D.2
-
12
-
-
34547197905
-
Protein-protein interfaces: Properties, preferences, and projections
-
DOI 10.1021/pr070018+
-
Headd, J. J., Ban, Y. E. A., Brown, P., et al. 2007. Protein-protein interfaces: properties, preferences, and projections. J. Proteome Res. 6, 2576-2586. (Pubitemid 47122352)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.7
, pp. 2576-2586
-
-
Headd, J.J.1
Ban, Y.E.A.2
Brown, P.3
Edelsbrunner, H.4
Vaidya, M.5
Rudolph, J.6
-
13
-
-
0000165109
-
Isotope-filtered 2D NMR of a protein-peptide complex: Study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin
-
Ikura, M., and Bax, A. 1992. Isotope-filtered 2D NMR of a protein-peptide complex: study of a skeletal muscle myosin light chain kinase fragment bound to calmodulin. J. Am. Chem. Soc. 114, 2433-2440.
-
(1992)
J. Am. Chem. Soc.
, vol.114
, pp. 2433-2440
-
-
Ikura, M.1
Bax, A.2
-
14
-
-
0024988099
-
Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution
-
Kay, L. E., Clore, G. M., Bax, A., et al. 1990. Four-dimensional heteronuclear triple-resonance NMR spectroscopy of interleukin-1 beta in solution. Science 249, 411-414.
-
(1990)
Science
, vol.249
, pp. 411-414
-
-
Kay, L.E.1
Clore, G.M.2
Bax, A.3
-
15
-
-
0037419802
-
GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information
-
DOI 10.1021/ja028197d
-
Kim, S., and Szyperski, T. 2003. GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information. J. Am. Chem. Soc. 125, 1385-1393. (Pubitemid 36159850)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.5
, pp. 1385-1393
-
-
Kim, S.1
Szyperski, T.2
-
16
-
-
0242303422
-
Solution structure of the coiled-coil trimerization domain from lung surfactant protein D
-
DOI 10.1023/A:1020980006628
-
Kovacs, H., O'Donoghue, S. I., Hoppe, H.-J., et al. 2002. Solution structure of the coiled-coil trimerization domain from lung surfactant protein D. J. Biomol. NMR 24, 89-102. (Pubitemid 35414672)
-
(2002)
Journal of Biomolecular NMR
, vol.24
, Issue.2
, pp. 89-102
-
-
Kovacs, H.1
O'Donoghue, S.I.2
Hoppe, H.-J.3
Comfort, D.4
Reid, K.B.M.5
Cambell, I.D.6
Nilges, M.7
-
17
-
-
80955127823
-
Novel x-ray structure of the YkuJ protein from Bacillus subtilis. Northeast structural genomics target SR360
-
Kuzin, A., Abashidze, M., Forouhar, F., et al. 2005. Novel x-ray structure of the YkuJ protein from Bacillus subtilis. Northeast Structural Genomics target SR360. Northeast Structural Genomics Consortium.
-
(2005)
Northeast Structural Genomics Consortium
-
-
Kuzin, A.1
Abashidze, M.2
Forouhar, F.3
-
18
-
-
46249083761
-
Assembly reflects evolution of protein complexes
-
DOI 10.1038/nature06942, PII NATURE06942
-
Levy, E. D., Erba, E. B., Robinson, C. V., et al. 2008. Assembly reflects evolution of protein complexes. Nature 453, 1262-1265. (Pubitemid 351913589)
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1262-1265
-
-
Levy, E.D.1
Erba, E.B.2
Robinson, C.V.3
Teichmann, S.A.4
-
19
-
-
0032190305
-
Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape
-
DOI 10.1002/(SICI)1097-0134(19981001)33:1<1::AID-PROT1>3.0.CO;2-O
-
Liang, J., Edelsbrunner, H., Fu, P., et al. 1998a. Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape. Proteins 33, 1-17. (Pubitemid 28413009)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.33
, Issue.1
, pp. 1-17
-
-
Liang, J.1
Edelsbrunner, H.2
Fu, P.3
Sudhakar, P.V.4
Subramaniam, S.5
-
20
-
-
0031687653
-
Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design
-
Liang, J., Woodward, C., and Edelsbrunner, H. 1998b. Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design. Protein Sci. 7, 1884-1897. (Pubitemid 28432430)
-
(1998)
Protein Science
, vol.7
, Issue.9
, pp. 1884-1897
-
-
Liang, J.1
Edelsbrunner, H.2
Woodward, C.3
-
21
-
-
0033145058
-
Order Matrix Analysis of Residual Dipolar Couplings Using Singular Value Decomposition
-
Losonczi, J. A., Andrec, M., Fischer, M. W. F., et al. 1999. Order matrix analysis of residual dipolar couplings using singular value decomposition. J. Magn. Reson. 138, 334-342. (Pubitemid 129608294)
-
(1999)
Journal of Magnetic Resonance
, vol.138
, Issue.2
, pp. 334-342
-
-
Losonczi, J.A.1
Andrec, M.2
Fischer, M.W.F.3
Prestegard, J.H.4
-
22
-
-
0001081820
-
Three-dimensional heteronuclear NMR of nitrogen-15 labeled proteins
-
Marion, D., Kay, L. E., Sparks, S. W., et al. 1989. Three-dimensional heteronuclear NMR of nitrogen-15 labeled proteins. J. Am. Chem. Soc. 111, 1515-1517.
-
(1989)
J. Am. Chem. Soc.
, vol.111
, pp. 1515-1517
-
-
Marion, D.1
Kay, L.E.2
Sparks, S.W.3
-
23
-
-
79956216314
-
A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers
-
Martin, J. W., Yan, A. K., Bailey-Kellogg, C., et al. 2011. A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers. Protein Sci. 20, 970-985.
-
(2011)
Protein Sci.
, vol.20
, pp. 970-985
-
-
Martin, J.W.1
Yan, A.K.2
Bailey-Kellogg, C.3
-
25
-
-
0034057133
-
6 human insulin structure
-
DOI 10.1023/A:1008323819099
-
O'Donoghue, S. I., Chang, X., Abseher, R., et al. 2000. Unraveling the symmetry ambiguity in a hexamer: calculation of the R6 human insulin structure. J. Biomol. NMR 16, 93-108. (Pubitemid 30139884)
-
(2000)
Journal of Biomolecular NMR
, vol.16
, Issue.2
, pp. 93-108
-
-
O'Donoghue, S.I.1
Chang, X.2
Abseher, R.3
Nilges, M.4
Led, J.J.5
-
27
-
-
33748271512
-
Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing
-
DOI 10.1002/prot.21091
-
Potluri, S., Yan, A. K., Chou, J. J., et al. 2006. Structure determination of symmetric homo-oligomers by a complete search of symmetry configuration space, using NMR restraints and van der Waals packing. Proteins 65, 203-219. (Pubitemid 44320629)
-
(2006)
Proteins: Structure, Function and Genetics
, vol.65
, Issue.1
, pp. 203-219
-
-
Potluri, S.1
Yan, A.K.2
Chou, J.J.3
Donald, B.R.4
Bailey-Kellogg, C.5
-
28
-
-
33845925822
-
A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers
-
DOI 10.1110/ps.062427307
-
Potluri, S., Yan, A. K., Donald, B. R., et al. 2007. A complete algorithm to resolve ambiguity for intersubunit NOE assignment in structure determination of symmetric homo-oligomers. Protein Sci. 16, 69-81. (Pubitemid 46036499)
-
(2007)
Protein Science
, vol.16
, Issue.1
, pp. 69-81
-
-
Potluri, S.1
Yan, A.K.2
Donald, B.R.3
Bailey-Kellogg, C.4
-
29
-
-
0002702652
-
Embeddability of weighted graphs in k-space is strongly NP-hard
-
Saxe, J. 1979. Embeddability of weighted graphs in k-space is strongly NP-hard. Proc. 17th Allerton Conf. Commun. Control Comput. 480-489.
-
(1979)
Proc. 17th Allerton Conf. Commun. Control Comput.
, pp. 480-489
-
-
Saxe, J.1
-
30
-
-
38749106195
-
Structure and mechanism of the M2 proton channel of influenza A virus
-
DOI 10.1038/nature06531, PII NATURE06531
-
Schnell, J. R., and Chou, J. J. 2008. Structure and mechanism of the M2 proton channel of influenza A virus. Nature 451, 591-595. (Pubitemid 351186272)
-
(2008)
Nature
, vol.451
, Issue.7178
, pp. 591-595
-
-
Schnell, J.R.1
Chou, J.J.2
-
31
-
-
0013293280
-
The Xplor-NIH NMR molecular structure determination package
-
Schwieters, C. D., Kuszewski, J. J., Tjandra, N., et al. 2003. The Xplor-NIH NMR molecular structure determination package. J. Magn. Reson. 160, 65-73.
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 65-73
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
-
32
-
-
67649908268
-
Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase
-
Van Horn, W. D., Kim, H.-J., Ellis, C. D., et al. 2009. Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase. Science 324, 1726-1729.
-
(2009)
Science
, vol.324
, pp. 1726-1729
-
-
Van Horn, W.D.1
Kim, H.-J.2
Ellis, C.D.3
-
33
-
-
2642620234
-
AmbiPack: A systematic algorithm for packing of macromolecular structures with ambigous distance constraints
-
DOI 10.1002/(SICI)1097-0134(19980701)32:1<26::AID-PROT5>3.0.CO;2-C
-
Wang, C.-S. E., Lozano-Pérez, T., and Tidor, B. 1998. AmbiPack: a systematic algorithm for packing of macromolecular structures with ambiguous distance constraints. Proteins 32, 26-42. (Pubitemid 28313250)
-
(1998)
Proteins: Structure, Function and Genetics
, vol.32
, Issue.1
, pp. 26-42
-
-
Wang, C.-S.E.1
Lozano-Perez, T.2
Tidor, B.3
-
34
-
-
71449091133
-
Solution structure and functional analysis of the influenza B proton channel
-
Wang, J., Pielak, R. M., McClintock, M. A., et al. 2009. Solution structure and functional analysis of the influenza B proton channel. Nat. Struct. Mol. Biol. 16, 1267-1271.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 1267-1271
-
-
Wang, J.1
Pielak, R.M.2
McClintock, M.A.3
-
35
-
-
33846263054
-
A polynomial-time algorithm for de novo protein backbone structure determination from nuclear magnetic resonance data
-
DOI 10.1089/cmb.2006.13.1267
-
Wang, L., Mettu, R. R., and Donald, B. R. 2006. A polynomial-time algorithm for de novo protein backbone structure determination from nuclear magnetic resonance data. J. Comput. Biol. 13, 1267-1288. (Pubitemid 46100693)
-
(2006)
Journal of Computational Biology
, vol.13
, Issue.7
, pp. 1267-1288
-
-
Wang, L.1
Mettu, R.R.2
Donald, B.R.3
-
36
-
-
43049118964
-
RDC-assisted modeling of symmetric protein homo-oligomers
-
DOI 10.1110/ps.073395108
-
Wang, X., Bansal, S., Jiang, M., et al. 2008. RDC-assisted modeling of symmetric protein homo-oligomers. Protein Sci. 17, 899-907. (Pubitemid 351629584)
-
(2008)
Protein Science
, vol.17
, Issue.5
, pp. 899-907
-
-
Wang, X.1
Bansal, S.2
Jiang, M.3
Prestegard, J.H.4
-
37
-
-
3042621274
-
The progress of membrane protein structure determination
-
DOI 10.1110/ps.04712004
-
White, S. H. 2004. The progress of membrane protein structure determination. Protein Sci. 13, 1948-1949. (Pubitemid 38822136)
-
(2004)
Protein Science
, vol.13
, Issue.7
, pp. 1948-1949
-
-
White, S.H.1
|