Molecular architecture and subunit organization of TRPA1 ion channel revealed by electron microscopy

Journal of Biological Chemistry

Volumn 286, Issue 44, 2011, Pages 38168-38176

  Cvetkov, Teresa L ^a   Huynh, Kevin W ^a   Cohen, Matthew R ^a   Moiseenkova Bell, Vera Y ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANKYRIN; CHANNEL ACTIVATION; CONFORMATIONAL CHANGE; COVALENT MODIFICATIONS; CYSTEINE RESIDUES; ELECTROPHILIC ACTIVATION; INFLAMMATORY MEDIATORS; ION CHANNEL; MOLECULAR ARCHITECTURE; MOLECULAR MODELS; N-TERMINALS; NEUROPATHIC PAIN; NOCICEPTOR; PROTEIN STRUCTURE PREDICTION; RESOLUTION STRUCTURE; SENSORY NEURONS; SINGLE-PARTICLE; TRANSIENT RECEPTOR POTENTIALS;

AMINO ACIDS; C (PROGRAMMING LANGUAGE); NEURONS; STRUCTURAL ANALYSIS;

ACTIVATION ANALYSIS;

CYSTEINE; PROTEIN SUBUNIT; TRANSIENT RECEPTOR POTENTIAL CHANNEL A1;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; COVALENT BOND; ELECTRON MICROSCOPY; LIGAND BINDING; MOLECULAR MODEL; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN INTERACTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; STRUCTURE ACTIVITY RELATION;

ANIMALS; CALCIUM; CHROMATOGRAPHY, GEL; CIRCULAR DICHROISM; INFLAMMATION; LIGANDS; MICE; MICROSCOPY, ELECTRON; MODELS, MOLECULAR; MOLECULAR CONFORMATION; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SACCHAROMYCES CEREVISIAE; STRUCTURE-ACTIVITY RELATIONSHIP; TRANSIENT RECEPTOR POTENTIAL CHANNELS;

EID: 80055073153     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.288993     Document Type: Article

References (83)

1. Levine, J. D., and Alessandri-Haber, N. (2007) Biochim. Biophys. Acta 1772, 989-1003
2. Venkatachalam, K., and Montell, C. (2007) Annu. Rev. Biochem. 76, 387-417
3. Montell, C. (2005) Sci. STKE 2005, re3
4. Nilius, B., Voets, T., and Peters, J. (2005) Sci. STKE 2005, re8
5. Latorre, R., Zaelzer, C., and Brauchi, S. (2009) Q. Rev. Biophys. 42, 201-246
6. Wang, Y. Y., Chang, R. B., Waters, H. N., McKemy, D. D., and Liman, E. R. (2008) J. Biol. Chem. 283, 32691-32703
7. Gees, M., Colsoul, B., and Nilius, B. (2010) Cold Spring Harb. Perspect. Biol. 2, a003962
8. Li, M., Yu, Y., and Yang, J. (2011) Adv. Exp. Med. Biol. 704, 1-23
9. Cosens, D. J., and Manning, A. (1969) Nature 224, 285-287
10. Yamaguchi, H., Matsushita, M., Nairn, A. C., and Kuriyan, J. (2001) Mol. Cell 7, 1047-1057
11. Jin, X., Touhey, J., and Gaudet, R. (2006) J. Biol. Chem. 281, 25006-25010
12. McCleverty, C. J., Koesema, E., Patapoutian, A., Lesley, S. A., and Kreusch, A. (2006) Protein Sci. 15, 2201-2206
13. Lishko, P. V., Procko, E., Jin, X., Phelps, C. B., and Gaudet, R. (2007) Neuron 54, 905-918
14. Phelps, C. B., Huang, R. J., Lishko, P. V., Wang, R. R., and Gaudet, R. (2008) Biochemistry 47, 2476-2484
15. Phelps, C. B., Wang, R. R., Choo, S. S., and Gaudet, R. (2010) J. Biol. Chem. 285, 731-740
16. Fujiwara, Y., and Minor, D. L., Jr. (2008) J. Mol. Biol. 383, 854-870
17. Yu, Y., Ulbrich, M. H., Li, M. H., Buraei, Z., Chen, X. Z., Ong, A. C., Tong, L., Isacoff, E. Y., and Yang, J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106, 11558-11563
18. Petri, E. T., Celic, A., Kennedy, S. D., Ehrlich, B. E., Boggon, T. J., and Hodsdon, M. E. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 9176-9181
19. Schumann, F., Hoffmeister, H., Bader, R., Schmidt, M., Witzgall, R., and Kalbitzer, H. R. (2009) J. Biol. Chem. 284, 24372-24383
20. Moiseenkova-Bell, V. Y., and Wensel, T. G. (2009) J. Gen. Physiol. 133, 239-244
21. Moiseenkova-Bell, V. Y., Stanciu, L. A., Serysheva, II, Tobe, B. J., and Wensel, T. G. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 7451-7455
22. Shigematsu, H., Sokabe, T., Danev, R., Tominaga, M., and Nagayama, K. (2010) J. Biol. Chem. 285, 11210-11218
23. Mio, K., Ogura, T., Kiyonaka, S., Hiroaki, Y., Tanimura, Y., Fujiyoshi, Y., Mori, Y., and Sato, C. (2007) J. Mol. Biol. 367, 373-383
24. Mio, K., Ogura, T., Hara, Y., Mori, Y., and Sato, C. (2005) Biochem. Biophys. Res. Commun. 333, 768-777
25. Maruyama, Y., Ogura, T., Mio, K., Kiyonaka, S., Kato, K., Mori, Y., and Sato, C. (2007) J. Biol. Chem. 282, 36961-36970
26. Ludtke, S. J., Baldwin, P. R., and Chiu, W. (1999) J. Struct. Biol. 128, 82-97
27. Fernández-Ballester, G., and Ferrer-Montiel, A. (2008) J. Membr. Biol. 223, 161-172
28. Ogura, T., and Sato, C. (2001) J. Struct. Biol. 136, 227-238
29. Ogura, T., Iwasaki, K., and Sato, C. (2003) J. Struct. Biol. 143, 185-200
30. Ogura, T., and Sato, C. (2004) J. Struct. Biol. 145, 63-75
31. Ogura, T., and Sato, C. (2004) J. Struct. Biol. 146, 344-358
32. Tribet, C., Diab, C., Dahmane, T., Zoonens, M., Popot, J. L., and Winnik, F. M. (2009) Langmuir 25, 12623-12634
33. Tribet, C., Audebert, R., and Popot, J. L. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 15047-15050
34. Popot, J. L., Althoff, T., Bagnard, D., Banères, J. L., Bazzacco, P., Billon- Denis, E., Catoire, L. J., Champeil, P., Charvolin, D., Cocco, M. J., Crémel, G., Dahmane, T., de la Maza, L. M., Ebel, C., Gabel, F., Giusti, F., Gohon, Y., Goormaghtigh, E., Guittet, E., Kleinschmidt, J. H., Kühlbrandt, W., Le Bon, C., Martinez, K. L., Picard, M., Pucci, B., Sachs, J. N., Tribet, C., van Heijenoort, C., Wien, F., Zito, F., and Zoonens, M. (2011) Annu. Rev. Biophys. 40, 379-408
35. Catoire, L. J., Zoonens, M., van Heijenoort, C., Giusti, F., Guittet, E., and Popot, J. L. (2010) Eur. Biophys. J. 39, 623-630
36. Flötenmeyer, M., Weiss, H., Tribet, C., Popot, J. L., and Leonard, K. (2007) J. Microsc. 227, 229-235
37. Gohon, Y., Dahmane, T., Ruigrok, R. W., Schuck, P., Charvolin, D., Rappaport, F., Timmins, P., Engelman, D. M., Tribet, C., Popot, J. L., and Ebel, C. (2008) Biophys. J. 94, 3523-3537
38. Wilkens, S. (2000) J. Bioenerg. Biomembr. 32, 333-339
39. Zoonens, M., Catoire, L. J., Giusti, F., and Popot, J. L. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 8893-8898
40. Popot, J. L., Berry, E. A., Charvolin, D., Creuzenet, C., Ebel, C., Engelman, D. M., Flötenmeyer, M., Giusti, F., Gohon, Y., Hong, Q., Lakey, J. H., Leonard, K., Shuman, H. A., Timmins, P., Warschawski, D. E., Zito, F., Zoonens, M., Pucci, B., and Tribet, C. (2003) Cell Mol. Life Sci. 60, 1559-1574
41. Bessac, B. F., and Jordt, S. E. (2008) Physiology 23, 360-370
42. Baraldi, P. G., Preti, D., Materazzi, S., and Geppetti, P. (2010) J. Med. Chem. 53, 5085-5107
43. Anand, U., Otto, W. R., Facer, P., Zebda, N., Selmer, I., Gunthorpe, M. J., Chessell, I. P., Sinisi, M., Birch, R., and Anand, P. (2008) Neurosci. Lett. 438, 221-227
44. Hinman, A., Chuang, H. H., Bautista, D. M., and Julius, D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 19564-19568
45. Kang, K., Pulver, S. R., Panzano, V. C., Chang, E. C., Griffith, L. C., Theobald, D. L., and Garrity, P. A. (2010) Nature 464, 597-600
46. Macpherson, L. J., Dubin, A. E., Evans, M. J., Marr, F., Schultz, P. G., Cravatt, B. F., and Patapoutian, A. (2007) Nature 445, 541-545
47. McNamara, C. R., Mandel-Brehm, J., Bautista, D. M., Siemens, J., Deranian, K. L., Zhao, M., Hayward, N. J., Chong, J. A., Julius, D., Moran, M. M., and Fanger, C. M. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 13525-13530
48. Takahashi, N., Mizuno, Y., Kozai, D., Yamamoto, S., Kiyonaka, S., Shibata, T., Uchida, K., and Mori, Y. (2008) Channels 2, 287-298
49. Andersson, D. A., Gentry, C., Moss, S., and Bevan, S. (2008) J. Neurosci. 28, 2485-2494
50. Cavanaugh, E. J., Simkin, D., and Kim, D. (2008) Neuroscience 154, 1467-1476
51. De Petrocellis, L., Vellani, V., Schiano-Moriello, A., Marini, P., Magherini, P. C., Orlando, P., and Di Marzo, V. (2008) J. Pharmacol. Exp. Ther. 325, 1007-1015
52. Karashima, Y., Damann, N., Prenen, J., Talavera, K., Segal, A., Voets, T., and Nilius, B. (2007) J. Neurosci. 27, 9874-9884
53. Doerner, J. F., Gisselmann, G., Hatt, H., and Wetzel, C. H. (2007) J. Biol. Chem. 282, 13180-13189
54. Lee, S. P., Buber, M. T., Yang, Q., Cerne, R., Cortés, R. Y., Sprous, D. G., and Bryant, R. W. (2008) Br. J. Pharmacol. 153, 1739-1749
55. Story, G. M., Peier, A. M., Reeve, A. J., Eid, S. R., Mosbacher, J., Hricik, T. R., Earley, T. J., Hergarden, A. C., Andersson, D. A., Hwang, S. W., McIntyre, P., Jegla, T., Bevan, S., and Patapoutian, A. (2003) Cell 112, 819-829
56. Macpherson, L. J., Xiao, B., Kwan, K. Y., Petrus, M. J., Dubin, A. E., Hwang, S., Cravatt, B., Corey, D. P., and Patapoutian, A. (2007) J. Neurosci. 27, 11412-11415
57. Sokolova, O. (2004) FEBS Lett. 564, 251-256
58. Figler, R. A., Omote, H., Nakamoto, R. K., and Al-Shawi, M. K. (2000) Arch. Biochem. Biophys. 376, 34-46
59. Moiseenkova, V. Y., Hellmich, H. L., and Christensen, B. N. (2003) Biochem. Biophys. Res. Commun. 310, 196-201
60. Bautista, D. M., Movahed, P., Hinman, A., Axelsson, H. E., Sterner, O., Högestätt, E. D., Julius, D., Jordt, S. E., and Zygmunt, P. M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 12248-12252
61. Sreerama, N., and Woody, R. W. (2000) Anal. Biochem. 287, 252-260
62. Sreerama, N., and Woody, R. W. (2004) Protein Sci. 13, 100-112
63. Tang, G., Peng, L., Baldwin, P. R., Mann, D. S., Jiang, W., Rees, I., and Ludtke, S. J. (2007) J. Struct. Biol. 157, 38-46
64. Roy, A., Kucukural, A., and Zhang, Y. (2010) Nat. Protoc 5, 725-738
65. Zhang, Y. (2008) BMC Bioinformatics 9, 40
66. Zhang, Y. (2009) Proteins 77, 100-113
67. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) J. Comput. Chem. 25, 1605-1612
68. Pintilie, G. D., Zhang, J., Goddard, T. D., Chiu, W., and Gossard, D. C. (2010) J. Struct. Biol. 170, 427-438
69. Cvetkov, T. L., and Prochaska, L. J. (2007) Protein Expr. Purif. 56, 189-196
70. Heginbotham, L., Kolmakova-Partensky, L., and Miller, C. (1998) J. Gen. Physiol. 111, 741-749
71. Greenfield, N. J. (2006) Nat. Protoc. 1, 2876-2890
72. Kelly, S. M., Jess, T. J., and Price, N. C. (2005) Biochim. Biophys. Acta 1751, 119-139
73. Hu, H., Bandell, M., Petrus, M. J., Zhu, M. X., and Patapoutian, A. (2009) Nat. Chem. Biol. 5, 183-190
74. Garavito, R. M., and Ferguson-Miller, S. (2001) J. Biol. Chem. 276, 32403-32406
75. le Maire, M., Champeil, P., and Moller, J. V. (2000) Biochim. Biophys. Acta 1508, 86-111
76. Gohon, Y., and Popot, J. L. (2003) Curr. Opin. Coll. Int. Sci. 8, 15-22
77. Sokolova, O., Kolmakova-Partensky, L., and Grigorieff, N. (2001) Structure 9, 215-220
78. Orlova, E. V., Papakosta, M., Booy, F. P., van Heel, M., and Dolly, J. O. (2003) J. Mol. Biol. 326, 1005-1012
79. Chiu, P. L., Pagel, M. D., Evans, J., Chou, H. T., Zeng, X., Gipson, B., Stahlberg, H., and Nimigean, C. M. (2007) Structure 15, 1053-1064
80. Banke, T. G. (2011) Brain Res. 1381, 21-30
81. Bobkov, Y. V., Corey, E. A., and Ache, B. W. (2011) Biochim. Biophys. Acta 1808, 1120-1128
82. Karashima, Y., Prenen, J., Talavera, K., Janssens, A., Voets, T., and Nilius, B. (2010) Biophys. J. 98, 773-783
83. Caterina, M. J. (2007) Nature 445, 491-492