-
1
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King M, Wilson A, (1975) Evolution at two levels in humans and chimpanzees. Science 188: 107-116.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.1
Wilson, A.2
-
2
-
-
34247554428
-
Conservation of regional gene expression in mouse and human brain
-
doi:10.1371/journal.pgen.0030059
-
Strand A. D, Aragaki A. K, Baquet Z. C, Hodges A, Cunningham P, et al. (2007) Conservation of regional gene expression in mouse and human brain. PLoS Genet 3: e59 doi:10.1371/journal.pgen.0030059.
-
(2007)
PLoS Genet
, vol.3
-
-
Strand, A.D.1
Aragaki, A.K.2
Baquet, Z.C.3
Hodges, A.4
Cunningham, P.5
-
3
-
-
65649137330
-
Transcriptional regulation and alternative splicing make for better brains
-
Dehay C, Kennedy H, (2009) Transcriptional regulation and alternative splicing make for better brains. Neuron 62: 455-457.
-
(2009)
Neuron
, vol.62
, pp. 455-457
-
-
Dehay, C.1
Kennedy, H.2
-
4
-
-
65649112466
-
Functional and evolutionary insights into human brain development through global transcriptome analysis
-
Johnson M, Kawasawa Y, Mason C, Krsnik Z, Coppola G, et al. (2009) Functional and evolutionary insights into human brain development through global transcriptome analysis. Neuron 62: 494-509.
-
(2009)
Neuron
, vol.62
, pp. 494-509
-
-
Johnson, M.1
Kawasawa, Y.2
Mason, C.3
Krsnik, Z.4
Coppola, G.5
-
5
-
-
70149100044
-
Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence
-
doi:10.1371/journal.pgen.1000592
-
Torgerson D. G, Boyko A. R, Hernandez R. D, Indap A, Hu X, et al. (2009) Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence. PLoS Genet 5: e1000592 doi:10.1371/journal.pgen.1000592.
-
(2009)
PLoS Genet
, vol.5
-
-
Torgerson, D.G.1
Boyko, A.R.2
Hernandez, R.D.3
Indap, A.4
Hu, X.5
-
6
-
-
34548346860
-
Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution
-
Haygood R, Fedrigo O, Hanson B, Yokoyama K. D, Wray G. A, (2007) Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution. Nat Genet 39: 1140-1144.
-
(2007)
Nat Genet
, vol.39
, pp. 1140-1144
-
-
Haygood, R.1
Fedrigo, O.2
Hanson, B.3
Yokoyama, K.D.4
Wray, G.A.5
-
7
-
-
77952359315
-
Contrasts between adaptive coding and noncoding changes during human evolution
-
Haygood R, Babbitt C, Fedrigo O, Wray G, (2010) Contrasts between adaptive coding and noncoding changes during human evolution. Proc Natl Acad Sci 107: 7853.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 7853
-
-
Haygood, R.1
Babbitt, C.2
Fedrigo, O.3
Wray, G.4
-
8
-
-
11144331051
-
Accelerated evolution of nervous system genes in the origin of Homo sapiens
-
Dorus S, Vallender E. J, Evans P. D, Anderson J. R, Gilbert S. L, et al. (2004) Accelerated evolution of nervous system genes in the origin of Homo sapiens. Cell 119: 1027-1040.
-
(2004)
Cell
, vol.119
, pp. 1027-1040
-
-
Dorus, S.1
Vallender, E.J.2
Evans, P.D.3
Anderson, J.R.4
Gilbert, S.L.5
-
9
-
-
33846984255
-
Rate of evolution in brain-expressed genes in humans and other primates
-
doi:10.1371/journal.pbio.0050013
-
Wang H. Y, Chien H. C, Osada N, Hashimoto K, Sugano S, et al. (2007) Rate of evolution in brain-expressed genes in humans and other primates. PLoS Biol 5: e13 doi:10.1371/journal.pbio.0050013.
-
(2007)
PLoS Biol
, vol.5
-
-
Wang, H.Y.1
Chien, H.C.2
Osada, N.3
Hashimoto, K.4
Sugano, S.5
-
10
-
-
77950787829
-
Inhibitory interneurons of the human prefrontal cortex display conserved evolution of the phenotype and related genes
-
Sherwood C. C, Raghanti M. A, Stimpson C. D, Spocter M. A, Uddin M, et al. (2010) Inhibitory interneurons of the human prefrontal cortex display conserved evolution of the phenotype and related genes. Proc Biol Sci 277: 1011-1020.
-
(2010)
Proc Biol Sci
, vol.277
, pp. 1011-1020
-
-
Sherwood, C.C.1
Raghanti, M.A.2
Stimpson, C.D.3
Spocter, M.A.4
Uddin, M.5
-
11
-
-
24644454655
-
Ongoing adaptive evolution of ASPM, a brain size determinant in homo sapiens
-
Mekel-Bobrov N, Gilbert S. L, Evans P. D, Vallender E. J, Anderson J. R, et al. (2005) Ongoing adaptive evolution of ASPM, a brain size determinant in homo sapiens. Science 309: 1720-1722.
-
(2005)
Science
, vol.309
, pp. 1720-1722
-
-
Mekel-Bobrov, N.1
Gilbert, S.L.2
Evans, P.D.3
Vallender, E.J.4
Anderson, J.R.5
-
12
-
-
24644507039
-
Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans
-
Evans P, Gilbert S, Mekel-Bobrov N, Vallender E, Anderson J, et al. (2005) Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans. Science 309: 1717.
-
(2005)
Science
, vol.309
, pp. 1717
-
-
Evans, P.1
Gilbert, S.2
Mekel-Bobrov, N.3
Vallender, E.4
Anderson, J.5
-
13
-
-
33746456056
-
Comment on Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens and Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans
-
Currat M, Excoffier L, Maddison W, Otto S, Ray N, et al. (2006) Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens" and "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans." Science 313: 172a.
-
(2006)
Science
, vol.313
-
-
Currat, M.1
Excoffier, L.2
Maddison, W.3
Otto, S.4
Ray, N.5
-
14
-
-
34247520904
-
Comment on Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens
-
Yu F, Hill R, Schaffner S, Sabeti P, Wang E, et al. (2007) Comment on "Ongoing adaptive evolution of ASPM, a brain size determinant in Homo sapiens." Science 316: 370b.
-
(2007)
Science
, vol.316
-
-
Yu, F.1
Hill, R.2
Schaffner, S.3
Sabeti, P.4
Wang, E.5
-
15
-
-
0242354129
-
The origin of new genes: glimpses from the young and old
-
Long M, Betran E, Thornton K, Wang W, (2003) The origin of new genes: glimpses from the young and old. Nat Rev Genet 4: 865-875.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
16
-
-
57749177443
-
RNA-based gene duplication: mechanistic and evolutionary insights
-
Kaessmann H, Vinckenbosch N, Long M, (2009) RNA-based gene duplication: mechanistic and evolutionary insights. Nat Rev Genet 10: 19-31.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
17
-
-
77952449083
-
Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa
-
Domazet-Lošo T, Tautz D, (2010) Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa. BMC Biol 8: 66.
-
(2010)
BMC Biol
, vol.8
, pp. 66
-
-
Domazet-Lošo, T.1
Tautz, D.2
-
18
-
-
43249118306
-
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
-
doi:10.1371/journal.pbio.0060080
-
Potrzebowski L, Vinckenbosch N, Marques A. C, Chalmel F, Jegou B, et al. (2008) Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. PLoS Biol 6: e80 doi:10.1371/journal.pbio.0060080.
-
(2008)
PLoS Biol
, vol.6
-
-
Potrzebowski, L.1
Vinckenbosch, N.2
Marques, A.C.3
Chalmel, F.4
Jegou, B.5
-
19
-
-
78149404797
-
Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome
-
doi:10.1371/journal.pbio.1000494
-
Zhang Y. E, Vibranovski M. D, Landback P, Marais G. A. B, Long M, (2010) Chromosomal redistribution of male-biased genes in mammalian evolution with two bursts of gene gain on the X chromosome. PLoS Biol 8: e1000494 doi:10.1371/journal.pbio.1000494.
-
(2010)
PLoS Biol
, vol.8
-
-
Zhang, Y.E.1
Vibranovski, M.D.2
Landback, P.3
Marais, G.A.B.4
Long, M.5
-
20
-
-
33748292822
-
Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains
-
Popesco M. C, Maclaren E. J, Hopkins J, Dumas L, Cox M, et al. (2006) Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains. Science 313: 1304-1307.
-
(2006)
Science
, vol.313
, pp. 1304-1307
-
-
Popesco, M.C.1
Maclaren, E.J.2
Hopkins, J.3
Dumas, L.4
Cox, M.5
-
21
-
-
70349274112
-
Evolution of the neocortex: a perspective from developmental biology
-
Rakic P, (2009) Evolution of the neocortex: a perspective from developmental biology. Nat Rev Neurosci 10: 724-735.
-
(2009)
Nat Rev Neurosci
, vol.10
, pp. 724-735
-
-
Rakic, P.1
-
23
-
-
0037012222
-
Spatial memory and hippocampal pallium through vertebrate evolution: insights from reptiles and teleost fish
-
Rodríguez F, López J. C, Vargas J. P, Broglio C, Gómez Y, et al. (2002) Spatial memory and hippocampal pallium through vertebrate evolution: insights from reptiles and teleost fish. Brain Res Bull 57: 499-503.
-
(2002)
Brain Res Bull
, vol.57
, pp. 499-503
-
-
Rodríguez, F.1
López, J.C.2
Vargas, J.P.3
Broglio, C.4
Gómez, Y.5
-
24
-
-
32344446690
-
Hedgehog signalling from the zona limitans intrathalamica orchestrates patterning of the zebrafish diencephalon
-
Scholpp S, Wolf O, Brand M, Lumsden A, (2006) Hedgehog signalling from the zona limitans intrathalamica orchestrates patterning of the zebrafish diencephalon. Development 133: 855-864.
-
(2006)
Development
, vol.133
, pp. 855-864
-
-
Scholpp, S.1
Wolf, O.2
Brand, M.3
Lumsden, A.4
-
25
-
-
48249154602
-
Cerebellum-like structures and their implications for cerebellar function
-
Bell C. C, Han V, Sawtell N. B, (2008) Cerebellum-like structures and their implications for cerebellar function. Annu Rev Neurosci 31: 1-24.
-
(2008)
Annu Rev Neurosci
, vol.31
, pp. 1-24
-
-
Bell, C.C.1
Han, V.2
Sawtell, N.B.3
-
26
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
Wheeler D. L, Barrett T, Benson D. A, Bryant S. H, Canese K, et al. (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 36: D13-D21.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 13-21
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
-
27
-
-
38549117407
-
PRIDE: new developments and new datasets
-
Jones P, Cote R. G, Cho S. Y, Klie S, Martens L, et al. (2008) PRIDE: new developments and new datasets. Nucleic Acids Res 36: D878-D883.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 878-883
-
-
Jones, P.1
Cote, R.G.2
Cho, S.Y.3
Klie, S.4
Martens, L.5
-
28
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M, (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
29
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Da Wei Huang B, Lempicki R, (2008) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2008)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Da Wei Huang, B.1
Lempicki, R.2
-
30
-
-
58149203231
-
InterPro: the integrative protein signature database
-
Hunter S, Apweiler R, Attwood T, Bairoch A, Bateman A, et al. (2009) InterPro: the integrative protein signature database. Nucleic Acids Res 37: D211.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.3
Bairoch, A.4
Bateman, A.5
-
31
-
-
62549128139
-
A census of human transcription factors: function, expression and evolution
-
Vaquerizas J. M, Kummerfeld S. K, Teichmann S. A, Luscombe N. M, (2009) A census of human transcription factors: function, expression and evolution. Nat Rev Genet 10: 252-263.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 252-263
-
-
Vaquerizas, J.M.1
Kummerfeld, S.K.2
Teichmann, S.A.3
Luscombe, N.M.4
-
33
-
-
0031785674
-
Functional analysis of ZNF85 KRAB zinc finger protein, a member of the highly homologous ZNF91 family
-
Poncelet D. A, Bellefroid E. J, Bastiaens P. V, Demoitie M. A, Marine J. C, et al. (1998) Functional analysis of ZNF85 KRAB zinc finger protein, a member of the highly homologous ZNF91 family. DNA Cell Biol 17: 931-943.
-
(1998)
DNA Cell Biol
, vol.17
, pp. 931-943
-
-
Poncelet, D.A.1
Bellefroid, E.J.2
Bastiaens, P.V.3
Demoitie, M.A.4
Marine, J.C.5
-
34
-
-
0035807336
-
Positive selection of a gene family during the emergence of humans and African apes
-
Johnson M. E, Viggiano L, Bailey J. A, Abdul-Rauf M, Goodwin G, et al. (2001) Positive selection of a gene family during the emergence of humans and African apes. Nature 413: 514-519.
-
(2001)
Nature
, vol.413
, pp. 514-519
-
-
Johnson, M.E.1
Viggiano, L.2
Bailey, J.A.3
Abdul-Rauf, M.4
Goodwin, G.5
-
36
-
-
33745373606
-
Primate segmental duplications: crucibles of evolution, diversity and disease
-
Bailey J. A, Eichler E. E, (2006) Primate segmental duplications: crucibles of evolution, diversity and disease. Nat Rev Genet 7: 552-564.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 552-564
-
-
Bailey, J.A.1
Eichler, E.E.2
-
37
-
-
33846078622
-
The UCSC genome browser database: update 2007
-
Kuhn R. M, Karolchik D, Zweig A. S, Trumbower H, Thomas D. J, et al. (2007) The UCSC genome browser database: update 2007. Nucleic Acids Res 35: D668-D673.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 668-673
-
-
Kuhn, R.M.1
Karolchik, D.2
Zweig, A.S.3
Trumbower, H.4
Thomas, D.J.5
-
38
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald J. H, Kreitman M, (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
39
-
-
27144539145
-
Natural selection on protein-coding genes in the human genome
-
Bustamante C. D, Fledel-Alon A, Williamson S, Nielsen R, Hubisz M. T, et al. (2005) Natural selection on protein-coding genes in the human genome. Nature 437: 1153-1157.
-
(2005)
Nature
, vol.437
, pp. 1153-1157
-
-
Bustamante, C.D.1
Fledel-Alon, A.2
Williamson, S.3
Nielsen, R.4
Hubisz, M.T.5
-
40
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
Domazet-Loso T, Tautz D, (2010) A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468: 815-818.
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Loso, T.1
Tautz, D.2
-
41
-
-
33846039019
-
Ensembl 2007
-
Hubbard T. J. P, Aken B. L, Beal K, Ballester B, Caccamo M, et al. (2007) Ensembl 2007. Nucleic Acids Res 35: D610.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Hubbard, T.J.P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
-
42
-
-
34247855863
-
The locus of evolution: evo devo and the genetics of adaptation
-
Hoekstra H. E, Coyne J. A, (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution 61: 995-1016.
-
(2007)
Evolution
, vol.61
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
43
-
-
45349091096
-
The gene regulatory logic of transcription factor evolution
-
Wagner G. P, Lynch V. J, (2008) The gene regulatory logic of transcription factor evolution. Trends in Ecology & Evolution 23: 377-385.
-
(2008)
Trends in Ecology & Evolution
, vol.23
, pp. 377-385
-
-
Wagner, G.P.1
Lynch, V.J.2
-
44
-
-
73349089334
-
Human-specific genes may offer a unique window into human cell signaling
-
Stahl P, Wainszelbaum M, (2009) Human-specific genes may offer a unique window into human cell signaling. Sci STKE 2.
-
(2009)
Sci STKE
, vol.2
-
-
Stahl, P.1
Wainszelbaum, M.2
-
45
-
-
0042208412
-
Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection
-
Betrán E, Long M, (2003) Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection. Genetics 164: 977.
-
(2003)
Genetics
, vol.164
, pp. 977
-
-
Betrán, E.1
Long, M.2
-
46
-
-
78649283800
-
Age-dependent chromosomal distribution of male-biased genes in Drosophila
-
Zhang Y. E, Vibranovski M. D, Krinsky B. H, Long M, (2010) Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Res 20: 1526-1533.
-
(2010)
Genome Res
, vol.20
, pp. 1526-1533
-
-
Zhang, Y.E.1
Vibranovski, M.D.2
Krinsky, B.H.3
Long, M.4
-
47
-
-
62449290266
-
The subtelomere of oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice
-
Fan C, Zhang Y, Yu Y, Rounsley S, Long M, et al. (2008) The subtelomere of oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Mol Plant pp. ssn050.
-
(2008)
Mol Plant
-
-
Fan, C.1
Zhang, Y.2
Yu, Y.3
Rounsley, S.4
Long, M.5
-
48
-
-
46249105777
-
Natural selection shapes genome-wide patterns of copy-number polymorphism in drosophila melanogaster
-
Emerson J. J, Cardoso-Moreira M, Borevitz J. O, Long M, (2008) Natural selection shapes genome-wide patterns of copy-number polymorphism in drosophila melanogaster. Science 320: 1629-1631.
-
(2008)
Science
, vol.320
, pp. 1629-1631
-
-
Emerson, J.J.1
Cardoso-Moreira, M.2
Borevitz, J.O.3
Long, M.4
-
49
-
-
9244247603
-
Evolving protein functional diversity in new genes of Drosophila
-
Zhang J, Dean A. M, Brunet F, Long M, (2004) Evolving protein functional diversity in new genes of Drosophila. Proc Natl Acad Sci U S A 101: 16246-16250.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 16246-16250
-
-
Zhang, J.1
Dean, A.M.2
Brunet, F.3
Long, M.4
-
50
-
-
33745543629
-
Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys
-
Zhang J, (2006) Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys. Nat Genet 38: 819-823.
-
(2006)
Nat Genet
, vol.38
, pp. 819-823
-
-
Zhang, J.1
-
51
-
-
45149097231
-
Adaptive evolution of the insulin two-gene system in mouse
-
Shiao M. S, Liao B. Y, Long M, Yu H. T, (2008) Adaptive evolution of the insulin two-gene system in mouse. Genetics 178: 1683-1691.
-
(2008)
Genetics
, vol.178
, pp. 1683-1691
-
-
Shiao, M.S.1
Liao, B.Y.2
Long, M.3
Yu, H.T.4
-
52
-
-
0037007062
-
Origin of sphinx, a young chimeric RNA gene in Drosophilamelanogaster
-
Wang W, Brunet F. G, Nevo E, Long M, (2002) Origin of sphinx, a young chimeric RNA gene in Drosophilamelanogaster. Proc Natl Acad Sci 99: 4448-4453.
-
(2002)
Proc Natl Acad Sci
, vol.99
, pp. 4448-4453
-
-
Wang, W.1
Brunet, F.G.2
Nevo, E.3
Long, M.4
-
53
-
-
44949250066
-
The evolution of courtship behaviors through the origination of a new gene in Drosophila
-
Dai H, Chen Y, Chen S, Mao Q, Kennedy D, et al. (2008) The evolution of courtship behaviors through the origination of a new gene in Drosophila. Proc Natl Acad Sci 105: 7478-7483.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 7478-7483
-
-
Dai, H.1
Chen, Y.2
Chen, S.3
Mao, Q.4
Kennedy, D.5
-
55
-
-
77958497573
-
Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes
-
Cai J. J, Petrov D. A, (2010) Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes. Genome Biol Evol 2: 393-409.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 393-409
-
-
Cai, J.J.1
Petrov, D.A.2
-
58
-
-
2442666425
-
The Ensembl Core Software Libraries
-
Stabenau A, McVicker G, Melsopp C, Proctor G, Clamp M, et al. (2004) The Ensembl Core Software Libraries. Genome Res 14: 929.
-
(2004)
Genome Res
, vol.14
, pp. 929
-
-
Stabenau, A.1
McVicker, G.2
Melsopp, C.3
Proctor, G.4
Clamp, M.5
-
59
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman R. C, Carey V. J, Bates D. M, Bolstad B, Dettling M, et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 5: R80.
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
-
60
-
-
56449118064
-
Retrocopy contributions to the evolution of the human genome
-
Baertsch R, Diekhans M, Kent W. J, Haussler D, Brosius J, (2008) Retrocopy contributions to the evolution of the human genome. BMC Genomics 9: 466.
-
(2008)
BMC Genomics
, vol.9
, pp. 466
-
-
Baertsch, R.1
Diekhans, M.2
Kent, W.J.3
Haussler, D.4
Brosius, J.5
-
62
-
-
58149182724
-
NCBI GEO: archive for high-throughput functional genomic data
-
Barrett T, Troup D. B, Wilhite S. E, Ledoux P, Rudnev D, et al. (2009) NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 37: D885-D890.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 885-890
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
-
63
-
-
33846062740
-
NATsDB: Natural Antisense Transcripts DataBase
-
Zhang Y, Li J, Kong L, Gao G, Liu Q. R, et al. (2007) NATsDB: Natural Antisense Transcripts DataBase. Nucleic Acids Res 35: D156-D161.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 156-161
-
-
Zhang, Y.1
Li, J.2
Kong, L.3
Gao, G.4
Liu, Q.R.5
-
64
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth G. K, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
65
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams B. A, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5: 621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
66
-
-
77957272611
-
A survey of sequence alignment algorithms for next-generation sequencing
-
Li H, Homer N, (2010) A survey of sequence alignment algorithms for next-generation sequencing. Brief Bioinform.
-
(2010)
Brief Bioinform
-
-
Li, H.1
Homer, N.2
-
67
-
-
42949106096
-
A novel method of differential gene expression analysis using multiple cDNA libraries applied to the identification of tumour endothelial genes
-
Herbert J. M, Stekel D, Sanderson S, Heath V. L, Bicknell R, (2008) A novel method of differential gene expression analysis using multiple cDNA libraries applied to the identification of tumour endothelial genes. BMC Genomics 9: 153.
-
(2008)
BMC Genomics
, vol.9
, pp. 153
-
-
Herbert, J.M.1
Stekel, D.2
Sanderson, S.3
Heath, V.L.4
Bicknell, R.5
-
68
-
-
0033853089
-
SAGEmap: a public gene expression resource
-
Lash A. E, Tolstoshev C. M, Wagner L, Schuler G. D, Strausberg R. L, et al. (2000) SAGEmap: a public gene expression resource. Genome Res 10: 1051-1060.
-
(2000)
Genome Res
, vol.10
, pp. 1051-1060
-
-
Lash, A.E.1
Tolstoshev, C.M.2
Wagner, L.3
Schuler, G.D.4
Strausberg, R.L.5
-
69
-
-
34547803197
-
PAML 4: phylogenetic analysis by maximum likelihood
-
Yang Z, (2007) PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 24: 1586-1591.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
-
70
-
-
79956353414
-
Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method
-
Zhang C. J, Wang J, Xie W. B, Zhou G, Long M. Y, et al. (2011) Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method. Proc Natl Acad Sci U S A 108: 7860-7865.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 7860-7865
-
-
Zhang, C.J.1
Wang, J.2
Xie, W.B.3
Zhou, G.4
Long, M.Y.5
-
71
-
-
77956275374
-
MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain
-
Somel M, Guo S, Fu N, Yan Z, Hu H. Y, et al. (2010) MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain. Genome Res 20: 1207-1218.
-
(2010)
Genome Res
, vol.20
, pp. 1207-1218
-
-
Somel, M.1
Guo, S.2
Fu, N.3
Yan, Z.4
Hu, H.Y.5
-
72
-
-
67949114182
-
Gene expression in the prefrontal cortex during adolescence: implications for the onset of schizophrenia
-
Harris L. W, Lockstone H. E, Khaitovich P, Weickert C. S, Webster M. J, et al. (2009) Gene expression in the prefrontal cortex during adolescence: implications for the onset of schizophrenia. BMC Med Genomics 2: 28.
-
(2009)
BMC Med Genomics
, vol.2
, pp. 28
-
-
Harris, L.W.1
Lockstone, H.E.2
Khaitovich, P.3
Weickert, C.S.4
Webster, M.J.5
-
73
-
-
75349113672
-
Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling
-
Ling K. H, Hewitt C. A, Beissbarth T, Hyde L, Banerjee K, et al. (2009) Molecular networks involved in mouse cerebral corticogenesis and spatio-temporal regulation of Sox4 and Sox11 novel antisense transcripts revealed by transcriptome profiling. Genome Biol 10: R104.
-
(2009)
Genome Biol
, vol.10
-
-
Ling, K.H.1
Hewitt, C.A.2
Beissbarth, T.3
Hyde, L.4
Banerjee, K.5
-
74
-
-
65249099621
-
Transcriptional neoteny in the human brain
-
Somel M, Franz H, Yan Z, Lorenc A, Guo S, et al. (2009) Transcriptional neoteny in the human brain. Proc Natl Acad Sci U S A 106: 5743-5748.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 5743-5748
-
-
Somel, M.1
Franz, H.2
Yan, Z.3
Lorenc, A.4
Guo, S.5
-
75
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
Heintzman N. D, Hon G. C, Hawkins R. D, Kheradpour P, Stark A, et al. (2009) Histone modifications at human enhancers reflect global cell-type-specific gene expression. Nature 459: 108-112.
-
(2009)
Nature
, vol.459
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
|