-
1
-
-
0032978833
-
Positive selection drives the evolution of the Ac-p29AB accessory gland protein in Drosophila
-
AGUADÉ, M., 1999 Positive selection drives the evolution of the Ac-p29AB accessory gland protein in Drosophila. Genetics 152: 543-551.
-
(1999)
Genetics
, vol.152
, pp. 543-551
-
-
Aguadé, M.1
-
2
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
ARABIDOPSIS GENOME INITIATIVE, 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana, Nature 408: 796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
3
-
-
0003455528
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
ASHBURNER, M., 1989 Drosophila: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Drosophila: A Laboratory Manual
-
-
Ashburner, M.1
-
4
-
-
0035252949
-
Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms
-
BALL, C. A., and J. M. CHERRY, 2001 Genome comparisons highlight similarity and diversity within the eukaryotic kingdoms. Curr. Opin. Chem. Biol. 5: 86-89.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 86-89
-
-
Ball, C.A.1
Cherry, J.M.2
-
5
-
-
0031032101
-
Origin and evolution of a new gene descended from alcohol dehydrogenase in Drosophila
-
BEGUN, D., 1997 Origin and evolution of a new gene descended from alcohol dehydrogenase in Drosophila. Genetics 145: 375-382.
-
(1997)
Genetics
, vol.145
, pp. 375-382
-
-
Begun, D.1
-
6
-
-
0036021702
-
Expansion of genome coding regions by acquisition of new genes
-
BETRAN, E., and M. LONG, 2002 Expansion of genome coding regions by acquisition of new genes. Genetica 115 (1): 65-80.
-
(2002)
Genetica
, vol.115
, Issue.1
, pp. 65-80
-
-
Betran, E.1
Long, M.2
-
7
-
-
0036906987
-
Retroposed new genes out of the X in Drosophila
-
BETRÁN, E., K. THORNTON and M. LONG, 2002 Retroposed new genes out of the X in Drosophila. Genome Res. 12: 1854-1859.
-
(2002)
Genome Res.
, vol.12
, pp. 1854-1859
-
-
Betrán, E.1
Thornton, K.2
Long, M.3
-
8
-
-
0036245426
-
The Drosophila homolog of NTF-2, the nuclear transport factor-2, is essential for immune response
-
BHATTACHARYA, A., and R. STEWARD, 2002 The Drosophila homolog of NTF-2, the nuclear transport factor-2, is essential for immune response. EMBO Rep. 3 (4): 378-383.
-
(2002)
EMBO Rep.
, vol.3
, Issue.4
, pp. 378-383
-
-
Bhattacharya, A.1
Steward, R.2
-
9
-
-
0033891353
-
Extensive duplication and reshuffling in the Arabidopsis genome
-
BLANC, G., A. BARAKAT, R. GUYOT, R. COOKE and M. DELSENY, 2000 Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12: 1093-1101.
-
(2000)
Plant Cell
, vol.12
, pp. 1093-1101
-
-
Blanc, G.1
Barakat, A.2
Guyot, R.3
Cooke, R.4
Delseny, M.5
-
11
-
-
0033911640
-
Hitchhiking under positive Darwinian selection
-
FAY, J. C., and C.-I WU, 2000 Hitchhiking under positive Darwinian selection. Genetics 155: 1405-1413.
-
(2000)
Genetics
, vol.155
, pp. 1405-1413
-
-
Fay, J.C.1
Wu, C.-I.2
-
12
-
-
0028168856
-
A codon-based model of nucleotide substitution for protein-coding DNA sequences
-
GOLDMAN, N., and Z. YANG, 1994 A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol. Biol. Evol. 11: 725-736.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.2
-
13
-
-
0036187351
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
-
GU, Z., A. CAVALCANTI, F-C. CHEN, P. BOUMAN and W.-H. LI, 2002 Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Mol. Biol. Evol. 19: 256-262.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 256-262
-
-
Gu, Z.1
Cavalcanti, A.2
Chen, F.-C.3
Bouman, P.4
Li, W.-H.5
-
16
-
-
0029200909
-
Molecular evidence for natural selection
-
KREITMAN, M., and H. AKASHI, 1995 Molecular evidence for natural selection. Annu. Rev. Ecol. Syst. 26: 403-422.
-
(1995)
Annu. Rev. Ecol. Syst.
, vol.26
, pp. 403-422
-
-
Kreitman, M.1
Akashi, H.2
-
17
-
-
0000792280
-
Historical biogeography of the Drosophila melanogaster species subgroup
-
LACHAISE, D., M.-L. CARIOU, J. R. DAVID, F. LEMEUNIER, L. TSACAS et al., 1988 Historical biogeography of the Drosophila melanogaster species subgroup. Evol. Biol. 22: 159-225.
-
(1988)
Evol. Biol.
, vol.22
, pp. 159-225
-
-
Lachaise, D.1
Cariou, M.-L.2
David, J.R.3
Lemeunier, F.4
Tsacas, L.5
-
18
-
-
0017071682
-
Relationships in the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene banding sequences
-
LEMEUNIER, F., and M. ASHBURNER, 1976 Relationships in the melanogaster species subgroup of the genus Drosophila (Sophophora). II. Phylogenetic relationships between six species based upon polytene banding sequences. Proc. R. Soc. Lond. Ser. B 193: 257-294.
-
(1976)
Proc. R. Soc. Lond. Ser. B
, vol.193
, pp. 257-294
-
-
Lemeunier, F.1
Ashburner, M.2
-
19
-
-
0003421005
-
-
Sinauer Associates, Sunderland, MA
-
LI, W. H., 1997 Molecular Evolution. Sinauer Associates, Sunderland, MA.
-
(1997)
Molecular Evolution
-
-
Li, W.H.1
-
20
-
-
0035865239
-
Evolutionary analyses of the human genome
-
LI, W. H., Z. GU, H. WANG and A. NEKRUTENKO, 2001 Evolutionary analyses of the human genome. Nature 409: 847-849.
-
(2001)
Nature
, vol.409
, pp. 847-849
-
-
Li, W.H.1
Gu, Z.2
Wang, H.3
Nekrutenko, A.4
-
21
-
-
0015253206
-
The role of X-chromosome inactivation during spermatogenesis
-
LIFSCHYTZ, E., and D. L. LINDSLEY, 1972 The role of X-chromosome inactivation during spermatogenesis. Proc. Natl. Acad. Sci. USA 69: 182-186.
-
(1972)
Proc. Natl. Acad. Sci. USA
, vol.69
, pp. 182-186
-
-
Lifschytz, E.1
Lindsley, D.L.2
-
22
-
-
0037062440
-
Intron presence/absence polymorphism in Drosophila driven by positive Darwinian selection
-
LLOPART, A., J. M. COMERON, F. BRUNET, D. LACHAISE and M. LONG, 2002 Intron presence/absence polymorphism in Drosophila driven by positive Darwinian selection. Proc. Natl. Acad. Sci. USA 99 (12): 8121-8126.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.12
, pp. 8121-8126
-
-
Llopart, A.1
Comeron, J.M.2
Brunet, F.3
Lachaise, D.4
Long, M.5
-
23
-
-
0035546224
-
Evolution of novel genes
-
LONG, M., 2001 Evolution of novel genes. Curr. Opin. Genet. Dev. 11 (6): 673-680.
-
(2001)
Curr. Opin. Genet. Dev.
, vol.11
, Issue.6
, pp. 673-680
-
-
Long, M.1
-
24
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
-
LONG, M., and C. H. LANGLEY, 1993 Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science 260: 91-95.
-
(1993)
Science
, vol.260
, pp. 91-95
-
-
Long, M.1
Langley, C.H.2
-
25
-
-
0032852328
-
Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila
-
LONG, M., W. WANG and J. ZHANG, 1999 Origin of new genes and source for N-terminal domain of the chimerical gene, jingwei, in Drosophila. Gene 238: 135-141.
-
(1999)
Gene
, vol.238
, pp. 135-141
-
-
Long, M.1
Wang, W.2
Zhang, J.3
-
26
-
-
0026428610
-
Adaptative protein evolution at the Adh locus in Drosophila
-
McDONALD, J. H., and M. KREITMAN, 1991 Adaptative protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
27
-
-
0030033286
-
Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein binding
-
METZ, E. C., and S. R. PALUMBI, 1996 Positive selection and sequence rearrangements generate extensive polymorphism in the gamete recognition protein binding. Mol. Biol. Evol. 13: 397-406.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 397-406
-
-
Metz, E.C.1
Palumbi, S.R.2
-
28
-
-
0024387026
-
A 14 bp promoter element directs the testis specificity of the Drosophila beta 2 tubulin gene
-
MICHIELS, F., A. GASCH, B. KALTSCHMIDT and R. RENKAWITZ-POHL, 1989 A 14 bp promoter element directs the testis specificity of the Drosophila beta 2 tubulin gene. EMBO J. 8: 1559-1565.
-
(1989)
EMBO J.
, vol.8
, pp. 1559-1565
-
-
Michiels, F.1
Gasch, A.2
Kaltschmidt, B.3
Renkawitz-Pohl, R.4
-
29
-
-
0034809334
-
Statistical tests of selective neutrality in the age of genomics
-
NIELSEN, R., 2001 Statistical tests of selective neutrality in the age of genomics. Heredity 86: 641-647.
-
(2001)
Heredity
, vol.86
, pp. 641-647
-
-
Nielsen, R.1
-
30
-
-
0032506534
-
Selective sweep of a newly evolved sperm-specific gene in Drosophila
-
NURMINSKY, D. I., M. V. NURMINSKAYA, D. DE AGUIAR and D. L. HARTL, 1998 Selective sweep of a newly evolved sperm-specific gene in Drosophila. Nature 396: 572-575.
-
(1998)
Nature
, vol.396
, pp. 572-575
-
-
Nurminsky, D.I.1
Nurminskaya, M.V.2
De Aguiar, D.3
Hartl, D.L.4
-
31
-
-
0035808561
-
Chromosomal effects of rapid gene evolution in Drosophila melanogaster
-
NURMINSKY, D., D. DE AGUILAR, C. D. BUSTAMANTE and D. L. HARTL, 2001 Chromosomal effects of rapid gene evolution in Drosophila melanogaster. Science 291: 128-130.
-
(2001)
Science
, vol.291
, pp. 128-130
-
-
Nurminsky, D.1
De Aguilar, D.2
Bustamante, C.D.3
Hartl, D.L.4
-
33
-
-
0034564988
-
Detecting the form of selection from DNA sequence data
-
OTTO, S. P., 2000 Detecting the form of selection from DNA sequence data. Trends Genet. 16: 526-529.
-
(2000)
Trends Genet.
, vol.16
, pp. 526-529
-
-
Otto, S.P.1
-
35
-
-
0032972599
-
DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
-
ROZAS, J., and R. ROZAS, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
36
-
-
0034708444
-
Comparative genomics of the eukaryotes
-
RUBIN, G. M., M. D. YANDELL, J. R. WORTMAN, G. L. G. MIKLOS, C. R. NELSON et al., 2000 Comparative genomics of the eukaryotes. Science 287: 2204-2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Miklos, G.L.G.4
Nelson, C.R.5
-
37
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
38
-
-
0029099781
-
Properties of statistical tests of neutrality for DNA polymorphism data
-
SIMONSEN, K. L., G. A. CHURCHILL and C. F. AQUADRO, 1995 Properties of statistical tests of neutrality for DNA polymorphism data. Genetics 141: 413-429.
-
(1995)
Genetics
, vol.141
, pp. 413-429
-
-
Simonsen, K.L.1
Churchill, G.A.2
Aquadro, C.F.3
-
40
-
-
0035107551
-
Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive Darwinian selection of sperm lysin
-
SWANSON, W. J., C. F. AQUADRO and V. D. VACQUIER, 2001a Polymorphism in abalone fertilization proteins is consistent with the neutral evolution of the egg's receptor for lysin (VERL) and positive Darwinian selection of sperm lysin. Mol. Biol. Evol. 18: 376-383.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 376-383
-
-
Swanson, W.J.1
Aquadro, C.F.2
Vacquier, V.D.3
-
41
-
-
0035912788
-
Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila
-
SWANSON, W. J., A. G. CLARK, H. M. WALDRIP-DAIL, M. F. WOLFNER and C. F. AQUADRO, 2001b Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila. Proc. Natl. Acad. Sci. USA 98: 7375-7379.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 7375-7379
-
-
Swanson, W.J.1
Clark, A.G.2
Waldrip-Dail, H.M.3
Wolfner, M.F.4
Aquadro, C.F.5
-
42
-
-
0024313579
-
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
-
TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
-
(1989)
Genetics
, vol.123
, pp. 585-595
-
-
Tajima, F.1
-
43
-
-
0032553369
-
A rapidly evolving homeobox at the site of a hybrid sterility gene
-
TING, C.-T., S.-C. TSAUR, M. L. WU and C.-I WU, 1998 A rapidly evolving homeobox at the site of a hybrid sterility gene. Science 282: 1501-1504.
-
(1998)
Science
, vol.282
, pp. 1501-1504
-
-
Ting, C.-T.1
Tsaur, S.-C.2
Wu, M.L.3
Wu, C.-I.4
-
44
-
-
0034625065
-
The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus
-
TING, C.-T., S.-C. TSAUR and C.-I WU, 2000 The phylogeny of closely related species as revealed by the genealogy of a speciation gene, Odysseus. Proc. Natl. Acad. Sci. USA 97: 5313-5316.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5313-5316
-
-
Ting, C.-T.1
Tsaur, S.-C.2
Wu, C.-I.3
-
45
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
THOMPSON, J. D., D. G. HIGGINS and T. J. GIBSON, 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
46
-
-
0031927473
-
Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism
-
TSAUR, S. C., C. T. TING and C.-I WU, 1998 Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism. Mol. Biol. Evol. 15: 1040-1046.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 1040-1046
-
-
Tsaur, S.C.1
Ting, C.T.2
Wu, C.-I.3
-
47
-
-
0033850591
-
The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster
-
WANG, W., J. ZHANG, C. ALVAREZ, A. LLOPART and M. LONG, 2000 The origin of the Jingwei gene and the complex modular structure of its parental gene, yellow emperor, in Drosophila melanogaster. Mol. Biol. Evol. 17: 1294-1301.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1294-1301
-
-
Wang, W.1
Zhang, J.2
Alvarez, C.3
Llopart, A.4
Long, M.5
-
48
-
-
0037007062
-
Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster
-
WANG, W., F. G. BRUNET, E. NERO and M. LONG, 2002 Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 99 (7): 4448-4453.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, Issue.7
, pp. 4448-4453
-
-
Wang, W.1
Brunet, F.G.2
Nero, E.3
Long, M.4
-
49
-
-
0016491430
-
On the number of segregating sites in genetical models without recombination
-
WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
-
(1975)
Theor. Popul. Biol.
, vol.7
, pp. 256-276
-
-
Watterson, G.A.1
-
50
-
-
0034688140
-
Rapid evolution of male reproductive genes in the descent of man
-
WYCKOFF, G. J., W. WANG and C.-I WU, 2000 Rapid evolution of male reproductive genes in the descent of man. Nature 403: 304-309.
-
(2000)
Nature
, vol.403
, pp. 304-309
-
-
Wyckoff, G.J.1
Wang, W.2
Wu, C.-I.3
-
51
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
YANG, Z., 1997 PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci. 13: 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
52
-
-
0031897964
-
Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
-
YANG, Z., 1998 Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol. Biol. Evol. 15: 568-573.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 568-573
-
-
Yang, Z.1
-
53
-
-
0034537880
-
A selective sweep associated with a recent gene transposition in Drosophila miranda
-
YI, S., and B. CHARLESWORTH, 2000 A selective sweep associated with a recent gene transposition in Drosophila miranda. Genetics 156: 1753-1763.
-
(2000)
Genetics
, vol.156
, pp. 1753-1763
-
-
Yi, S.1
Charlesworth, B.2
|