CORNEAL: Conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting

Genome Research

Volumn 14, Issue 1, 2004, Pages 170-178

  Berezikov, Eugene ^a   Guryev, Victor ^a   Plasterk, Ronald H A ^a   Cuppen, Edwin ^a  

^a HUBRECHT INSTITUTE   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR; DNA BINDING PROTEIN; FOXA2 PROTEIN, HUMAN; FOXA2 PROTEIN, MOUSE; FOXA2 PROTEIN, RAT; HEPATOCYTE NUCLEAR FACTOR 3BETA; NUCLEAR PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; COMPUTER PROGRAM; CONTROLLED STUDY; FISH; HUMAN; INTERMETHOD COMPARISON; NONHUMAN; ORTHOLOGY; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN ANALYSIS; PROTEIN FOOTPRINTING; RODENT; SEQUENCE ALIGNMENT; SPECIES COMPARISON; ANIMAL; COMPARATIVE STUDY; DNA FOOTPRINTING; GENETICS; INTERNET; METABOLISM; METHODOLOGY; MOUSE; NUCLEOTIDE SEQUENCE; PUFFER FISH; RAT; REGULATORY SEQUENCE; SEQUENCE HOMOLOGY; STATISTICS; ZEBRA FISH;

RODENTIA;

ALGORITHMS; ANIMALS; BINDING SITES; CONSERVED SEQUENCE; DNA FOOTPRINTING; DNA-BINDING PROTEINS; HEPATOCYTE NUCLEAR FACTOR 3-BETA; HUMANS; INTERNET; MICE; NUCLEAR PROTEINS; PHYLOGENY; PROMOTER REGIONS (GENETICS); RATS; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; TAKIFUGU; TRANSCRIPTION FACTORS; ZEBRAFISH;

EID: 0345874725     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.1642804     Document Type: Article

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