Cooperation between an intrinsically disordered region and a helical segment is required for ubiquitin-independent degradation by the proteasome

Journal of Biological Chemistry

Volumn 286, Issue 42, 2011, Pages 36559-36567

  Melo, Sandra P ^a   Barbour, Karen W ^a   Berger, Franklin G ^a  

^a UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPHIPATHIC; BIOSYNTHETIC ENZYMES; DISORDERED DOMAINS; DISORDERED REGIONS; DNA REPLICATIONS; HELICAL CONFORMATION; HELICAL SEGMENTS; HETEROLOGOUS PROTEINS; N-TERMINALS; POLYUBIQUITIN; PROTEASOMES; PROTEIN DEGRADATION; STRUCTURAL COMPONENT; TARGET-SUBSTRATE; THYMIDYLATE SYNTHASE; UBIQUITINYLATION;

PROTEINS; PROTEOLYSIS; SUBSTRATES;

DEGRADATION;

THYMIDYLATE SYNTHASE; UBIQUITIN;

ALPHA HELIX; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; ENZYME CONFORMATION; ENZYME STRUCTURE; INTRINSICALLY DISORDERED REGION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN DOMAIN; STRUCTURE ACTIVITY RELATION;

ANIMALS; CELL LINE; CRICETINAE; CRICETULUS; MICE; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEIN STRUCTURE, SECONDARY; PROTEOLYSIS; THYMIDYLATE SYNTHASE; UBIQUITIN; UBIQUITINATION;

EID: 80054690869     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.274258     Document Type: Article

References (53)

1. Ciechanover, A. (1998) EMBO J. 17, 7151-7160
2. Glickman, M. H., and Ciechanover, A. (2002) Physiol. Rev. 82, 373-428
3. Rechsteiner, M., and Hill, C. P. (2005) Trends Cell Biol. 15, 27-33
4. Cheng, Y. (2009) Curr. Opin. Struct. Biol. 19, 203-208
5. Finley, D. (2009) Annu. Rev. Biochem. 78, 477-513
6. Pickart, C. M., and Cohen, R. E. (2004) Nat. Rev. Mol. Cell Biol. 5, 177-187
7. Braun, B. C., Glickman, M., Kraft, R., Dahlmann, B., Kloetzel, P. M., Finley, D., and Schmidt, M. (1999) Nat. Cell Biol. 1, 221-226
8. Strickland, E., Hakala, K., Thomas, P. J., and DeMartino, G. N. (2000) J. Biol. Chem. 275, 5565-5572
9. Jariel-Encontre, I., Bossis, G., and Piechaczyk, M. (2008) Biochim. Biophys. Acta 1786, 153-177
10. Orlowski, M., and Wilk, S. (2003) Arch. Biochem. Biophys. 415, 1-5
11. Takeuchi, J., Chen, H., and Coffino, P. (2007) EMBO J. 26, 123-131
12. Takeuchi, J., Chen, H., Hoyt, M. A., and Coffino, P. (2008) Biochem. J. 410, 401-407
13. Zhang, M., Pickart, C. M., and Coffino, P. (2003) EMBO J. 22, 1488-1496
14. Basbous, J., Jariel-Encontre, I., Gomard, T., Bossis, G., and Piechaczyk, M. (2008) Biochimie 90, 296-305
15. Bossis, G., Ferrara, P., Acquaviva, C., Jariel-Encontre, I., and Piechaczyk, M. (2003) Mol. Cell. Biol. 23, 7425-7436
16. Chen, X., Barton, L. F., Chi, Y., Clurman, B. E., and Roberts, J. M. (2007) Mol. Cell 26, 843-852
17. Li, X., Amazit, L., Long, W., Lonard, D. M., Monaco, J. J., and O'Malley, B. W. (2007) Mol. Cell 26, 831-842
18. Yuksek, K., Chen, W. L., Chien, D., and Ou, J. H. (2009) J. Virol. 83, 612-621
19. Mathes, E., O'Dea, E. L., Hoffmann, A., and Ghosh, G. (2008) EMBO J. 27, 1357-1367
20. Truhlar, S. M., Mathes, E., Cervantes, C. F., Ghosh, G., and Komives, E. A. (2008) J. Mol. Biol. 380, 67-82
21. Baugh, J. M., Viktorova, E. G., and Pilipenko, E. V. (2009) J. Mol. Biol. 386, 814-827
22. Berger, F. G., and Berger, S. H. (2006) Cancer Biol. Ther. 5, 1238-1241
23. Carreras, C. W., and Santi, D. V. (1995) Annu. Rev. Biochem. 64, 721-762
24. Forsthoefel, A. M., Peña, M. M., Xing, Y. Y., Rafique, Z., and Berger, F. G. (2004) Biochemistry 43, 1972-1979
25. Peña, M. M., Xing, Y. Y., Koli, S., and Berger, F. G. (2006) Biochem. J. 394, 355-363
26. Peña, M. M., Melo, S. P., Xing, Y. Y., White, K., Barbour, K. W., and Berger, F. G. (2009) J. Biol. Chem. 284, 31597-31607
27. Melo, S. P., Yoshida, A., and Berger, F. G. (2010) Biochem. J. 432, 217-226
28. Nussbaum, R. L., Walmsley, R. M., Lesko, J. G., Airhart, S. D., and Ledbetter, D. H. (1985) Am. J. Hum. Genet. 37, 1192-1205
29. Cole, C., Barber, J. D., and Barton, G. J. (2008) Nucleic Acids Res. 36, W197-201
30. Bryson, K., McGuffin, L. J., Marsden, R. L., Ward, J. J., Sodhi, J. S., and Jones, D. T. (2005) Nucleic Acids Res. 33, W36-W38
31. Moreland, J. L., Gramada, A., Buzko, O. V., Zhang, Q., and Bourne, P. E. (2005) BMC Bioinformatics 6, 21
32. Chou, P. Y., and Fasman, G. D. (1978) Adv. Enzymol. Relat. Areas Mol. Biol. 47, 45-148
33. Kumar, S., and Bansal, M. (1998) Proteins 31, 460-476
34. Mahalingam, S., Khan, S. A., Murali, R., Jabbar, M. A., Monken, C. E., Collman, R. G., and Srinivasan, A. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 3794-3798
35. Phan, J., Steadman, D. J., Koli, S., Ding, W. C., Minor, W., Dunlap, R. B., Berger, S. H., and Lebioda, L. (2001) J. Biol. Chem. 276, 14170-14177
36. Schiffer, C. A., Clifton, I. J., Davisson, V. J., Santi, D. V., and Stroud, R. M. (1995) Biochemistry 34, 16279-16287
37. Yang, Z., Kollman, J. M., Pandi, L., and Doolittle, R. F. (2001) Biochemistry 40, 12515-12523
38. Prakash, S., Tian, L., Ratliff, K. S., Lehotzky, R. E., and Matouschek, A. (2004) Nat. Struct. Mol. Biol. 11, 830-837
39. Slijper, M., Bonvin, A. M., Boelens, R., and Kaptein, R. (1996) J. Mol. Biol. 259, 761-773
40. Gödderz, D., Schäfer, E., Palanimurugan, R., and Dohmen, R. J. (2011) J. Mol. Biol. 407, 354-367
41. Hardy, L. W., Finer-Moore, J. S., Montfort, W. R., Jones, M. O., Santi, D. V., and Stroud, R. M. (1987) Science 235, 448-455
42. Peth, A., Uchiki, T., and Goldberg, A. L. (2010) Mol. Cell 40, 671-681
43. Tsvetkov, P., Reuven, N., Prives, C., and Shaul, Y. (2009) J. Biol. Chem. 284, 26234-26242
44. Touitou, R., Richardson, J., Bose, S., Nakanishi, M., Rivett, J., and Allday, M. J. (2001) EMBO J. 20, 2367-2375
45. Inobe, T., Fishbain, S., Prakash, S., and Matouschek, A. (2011) Nat. Chem. Biol. 7, 161-167
46. Schrader, E. K., Harstad, K. G., and Matouschek, A. (2009) Nat. Chem. Biol. 5, 815-822
47. Elsasser, S., and Finley, D. (2005) Nat. Cell Biol. 7, 742-749
48. Burns, K. E., and Darwin, K. H. (2010) Subcell. Biochem. 54, 149-157
49. Chen, X., Solomon, W. C., Kang, Y., Cerda-Maira, F., Darwin, K. H., and Walters, K. J. (2009) J. Mol. Biol. 392, 208-217
50. Liao, S., Shang, Q., Zhang, X., Zhang, J., Xu, C., and Tu, X. (2009) Biochem. J. 422, 207-215
51. Sutter, M., Striebel, F., Damberger, F. F., Allain, F. H., and Weber-Ban, E. (2009) FEBS Lett. 583, 3151-3157
52. Wang, T., Darwin, K. H., and Li, H. (2010) Nat. Struct. Mol. Biol. 17, 1352-1357
53. Piwko, W., and Jentsch, S. (2006) Nat. Struct. Mol. Biol. 13, 691-697