Erratum: Transcriptomes of the major human pancreatic cell types (Diabetologia DOI: 10.1007/s00125-011-2283-5);Transcriptomes of the major human pancreatic cell types

Diabetologia

Volumn 54, Issue 11, 2011, Pages 2832-2844

  Dorrell, C ^a   Schug, J ^b   Lin, C F ^b   Canaday, P S ^a   Fox, A J ^b   Smirnova, O ^b   Bonnah, R ^a   Streeter, P R ^a   Stoeckert Jr , C J ^b   Kaestner, K H ^b   Grompe, M ^a  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

Alpha cell; Beta cell; Paracrine signalling; Transcription factor

Indexed keywords

EPHRIN; EPHRIN RECEPTOR; TRANSCRIPTOME; TRANSFORMING GROWTH FACTOR BETA;

ACINAR CELL; ADULT; ARTICLE; CELL INTERACTION; CONTROLLED STUDY; FLUORESCENCE ACTIVATED CELL SORTING; GENE EXPRESSION PROFILING; HDAC9 GENE; HOPX GENE; HUMAN; HUMAN CELL; MICROARRAY ANALYSIS; NUCLEOTIDE SEQUENCE; PANCREAS CELL; PANCREAS DUCT CELL; PANCREAS ISLET ALPHA CELL; PANCREAS ISLET BETA CELL; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; TRANSCRIPTION REGULATION; UNINDEXED SEQUENCE; V MAF MUSCULOAPONEUROTIC FIBROSARCOMA ONCOGENE HOMOLOGUE B;

EID: 80054682732     PISSN: 0012186X     EISSN: 14320428     Source Type: Journal    
DOI: 10.1007/s00125-013-2886-0     Document Type: Erratum

References (49)

1. A Maffei Z Liu P Witkowski, et al. 2004 Identification of tissue-restricted transcripts in human islets Endocrinology 145 4513 4521 15231694 10.1210/en.2004-0691 1:CAS:528:DC%2BD2cXnvFOqt7c%3D (Pubitemid 39281443)
2. JE Gunton RN Kulkarni S Yim, et al. 2005 Loss of ARNT/HIF1β mediates altered gene expression and pancreatic-islet dysfunction in human type 2 diabetes Cell 122 337 349 16096055 10.1016/j.cell.2005.05.027 1:CAS:528:DC%2BD2MXovV2qsrs%3D (Pubitemid 41127137)
3. B Kutlu D Burdick D Baxter, et al. 2009 Detailed transcriptome atlas of the pancreatic beta cell BMC Med Genomics 2 3 19146692 10.1186/1755-8794-2-3
4. BM Lyttle J Li M Krishnamurthy, et al. 2008 Transcription factor expression in the developing human fetal endocrine pancreas Diabetologia 51 1169 1180 18491072 10.1007/s00125-008-1006-z 1:CAS:528:DC%2BD1cXmslWhtbs%3D
5. L Marselli J Thorne S Dahiya, et al. 2010 Gene expression profiles of beta-cell enriched tissue obtained by laser capture microdissection from subjects with type 2 diabetes PLoS One 5 e11499 20644627 10.1371/journal.pone. 0011499
6. M Szabat DS Luciani JM Piret JD Johnson 2009 Maturation of adult beta-cells revealed using a Pdx1/insulin dual-reporter lentivirus Endocrinology 150 1627 1635 19095744 10.1210/en.2008-1224 1:CAS:528:DC%2BD1MXktVWmu7o%3D
7. M Hara X Wang T Kawamura, et al. 2003 Transgenic mice with green fluorescent protein-labeled pancreatic beta -cells Am J Physiol Endocrinol Metab 284 E177 E183 12388130 1:CAS:528:DC%2BD3sXntVShug%3D%3D
8. N Quoix R Cheng-Xue Y Guiot PL Herrera JC Henquin P Gilon 2007 The GluCre-ROSA26EYFP mouse: a new model for easy identification of living pancreatic alpha-cells FEBS Lett 581 4235 4240 17706201 10.1016/j.febslet.2007. 07.068 1:CAS:528:DC%2BD2sXpsFKmtrk%3D (Pubitemid 47301858)
9. I Meivar-Levy S Ferber 2010 Adult cell fate reprogramming: converting liver to pancreas Methods Mol Biol 636 251 283 20336528 10.1007/978-1-60761-691- 7-16 1:CAS:528:DC%2BC3cXovVKjtLo%3D
10. S Kordowich A Mansouri P Collombat 2010 Reprogramming into pancreatic endocrine cells based on developmental cues Mol Cell Endocrinol 323 62 69 20025937 10.1016/j.mce.2009.12.016 1:CAS:528:DC%2BC3cXmtFWrtL4%3D
11. M Olbrot J Rud LG Moss A Sharma 2002 Identification of beta-cell-specific insulin gene transcription factor RIPE3b1 as mammalian MafA Proc Natl Acad Sci U S A 99 6737 6742 12011435 10.1073/pnas.102168499 1:CAS:528: DC%2BD38XjvFCrsbk%3D (Pubitemid 34526201)
12. I Artner J Le Lay Y Hang, et al. 2006 MafB: an activator of the glucagon gene expressed in developing islet alpha- and beta-cells Diabetes 55 297 304 16443760 10.2337/diabetes.55.02.06.db05-0946 1:CAS:528:DC%2BD28XhsFajsr8%3D (Pubitemid 43343256)
13. J Jensen P Serup C Karlsen TF Nielsen OD Madsen 1996 mRNA profiling of rat islet tumors reveals nkx 6.1 as a beta-cell-specific homeodomain transcription factor J Biol Chem 271 18749 18758 8702531 10.1074/jbc.271.31. 18749 1:CAS:528:DyaK28XkslCisbc%3D (Pubitemid 26322743)
14. L Sussel J Kalamaras DJ Hartigan-OConnor, et al. 1998 Mice lacking the homeodomain transcription factor Nkx2.2 have diabetes due to arrested differentiation of pancreatic beta cells Development 125 2213 2221 9584121 1:CAS:528:DyaK1cXksFanu70%3D (Pubitemid 28336383)
15. B Sosa-Pineda K Chowdhury M Torres G Oliver P Gruss 1997 The Pax4 gene is essential for differentiation of insulin-producing beta cells in the mammalian pancreas Nature 386 399 402 9121556 10.1038/386399a0 1:CAS:528: DyaK2sXit1WrsLs%3D (Pubitemid 27154480)
16. N Turque S Plaza F Radvanyi C Carriere S Saule 1994 Pax-QNR/Pax-6, a paired box- and homeobox-containing gene expressed in neurons, is also expressed in pancreatic endocrine cells Mol Endocrinol 8 929 938 7984154 10.1210/me.8.7.929 1:CAS:528:DyaK2cXltVGhtrs%3D (Pubitemid 24226969)
17. U Ahlgren J Jonsson L Jonsson K Simu H Edlund 1998 Beta-cell-specific inactivation of the mouse Ipf1/Pdx1 gene results in loss of the beta-cell phenotype and maturity onset diabetes Genes Dev 12 1763 1768 9637677 10.1101/gad.12.12.1763 1:CAS:528:DyaK1cXktl2isbw%3D (Pubitemid 28304328)
18. L Baeyens L Bouwens 2008 Can beta-cells be derived from exocrine pancreas? Diabetes Obes Metab 10 Suppl 4 170 178 18834444 10.1111/j.1463-1326. 2008.00949.x
19. D Van Hoof KA DAmour MS German 2009 Derivation of insulin-producing cells from human embryonic stem cells Stem Cell Res 3 73 87 19766074 10.1016/j.scr.2009.08.003
20. D Pavlovic MC Chen L Bouwens DL Eizirik D Pipeleers 1999 Contribution of ductal cells to cytokine responses by human pancreatic islets Diabetes 48 29 33 9892219 10.2337/diabetes.48.1.29 1:CAS:528:DyaK1MXhvV2qsg%3D%3D (Pubitemid 29019349)
21. B Movahedi M Van de Casteele N Caluwe, et al. 2004 Human pancreatic duct cells can produce tumour necrosis factor-alpha that damages neighbouring beta cells and activates dendritic cells Diabetologia 47 998 1008 15184981 10.1007/s00125-004-1426-3 1:CAS:528:DC%2BD2cXltVKmtbg%3D (Pubitemid 38918158)
22. C Dorrell SL Abraham KM Lanxon-Cookson PS Canaday PR Streeter M Grompe 2008 Isolation of major pancreatic cell types and long-term culture-initiating cells using novel human surface markers Stem Cell Res 1 183 194 19383399 10.1016/j.scr.2008.04.001 1:CAS:528:DC%2BD1MXltFCitw%3D%3D
23. Gentleman R (2005) Bioinformatics and computational biology solutions using R and bioconductor. Springer, New York
24. VG Tusher R Tibshirani G Chu 2001 Significance analysis of microarrays applied to the ionizing radiation response Proc Natl Acad Sci U S A 98 5116 5121 11309499 10.1073/pnas.091062498 1:CAS:528:DC%2BD3MXjt1Ons7w%3D (Pubitemid 32397092)
25. GR Grant J Liu CJ Stoeckert Jr 2005 A practical false discovery rate approach to identifying patterns of differential expression in microarray data Bioinformatics 21 2684 2690 15797908 10.1093/bioinformatics/bti407 1:CAS:528:DC%2BD2MXks1eqsrY%3D (Pubitemid 40852315)
26. AI Saeed V Sharov J White, et al. 2003 TM4: a free, open-source system for microarray data management and analysis Biotechniques 34 374 378 12613259 1:CAS:528:DC%2BD3sXhtlCiur4%3D (Pubitemid 36184095)
27. AI Saeed NK Bhagabati JC Braisted, et al. 2006 TM4 microarray software suite Methods Enzymol 411 134 193 16939790 10.1016/S0076-6879(06)11009-5 1:CAS:528:DC%2BD2sXmtV2lt7Y%3D (Pubitemid 44291425)
28. J von Burstin M Reichert MP Wescott AK Rustgi 2010 The pancreatic and duodenal homeobox protein PDX-1 regulates the ductal specific keratin 19 through the degradation of MEIS1 and DNA binding PLoS One 5 e12311 10.1371/journal. pone.0012311
29. + currents Mol Endocrinol 21 765 773 17185391 10.1210/me.2006-0411 1:CAS:528:DC%2BD2sXivVOrt7g%3D
30. CA Dinarello MY Donath T Mandrup-Poulsen 2010 Role of IL-1β in type 2 diabetes Curr Opin Endocrinol Diabetes Obes 17 314 321 20588114 1:CAS:528:DC%2BC3cXot1WltLs%3D
31. GJ Cooper AC Willis A Clark RC Turner RB Sim KB Reid 1987 Purification and characterization of a peptide from amyloid-rich pancreases of type 2 diabetic patients Proc Natl Acad Sci U S A 84 8628 8632 3317417 10.1073/pnas.84.23.8628 1:CAS:528:DyaL1cXpt1GmtA%3D%3D (Pubitemid 18033465)
32. RP Robertson 1998 Dominance of cyclooxygenase-2 in the regulation of pancreatic islet prostaglandin synthesis Diabetes 47 1379 1383 9726224 10.2337/diabetes.47.9.1379 1:CAS:528:DyaK1cXls12rsrg%3D
33. A Petri J Ahnfelt-Ronne KS Frederiksen, et al. 2006 The effect of neurogenin3 deficiency on pancreatic gene expression in embryonic mice J Mol Endocrinol 37 301 316 17032746 10.1677/jme.1.02096 1:CAS:528:DC%2BD28Xht1eju7vJ (Pubitemid 44615300)
34. O Lioubinski M Muller M Wegner M Sander 2003 Expression of Sox transcription factors in the developing mouse pancreas Dev Dyn 227 402 408 12815626 10.1002/dvdy.10311 1:CAS:528:DC%2BD3sXmt12hurY%3D (Pubitemid 36828761)
35. H Zhang ET Ables CF Pope, et al. 2009 Multiple, temporal-specific roles for HNF6 in pancreatic endocrine and ductal differentiation Mech Dev 126 958 973 19766716 10.1016/j.mod.2009.09.006 1:CAS:528:DC%2BD1MXhtlyrsbbJ
36. E Bertelli M Bendayan 2005 Association between endocrine pancreas and ductal system. More than an epiphenomenon of endocrine differentiation and development? J Histochem Cytochem 53 1071 1086 15956021 10.1369/jhc.5R6640.2005 1:CAS:528:DC%2BD2MXhtVersb3J (Pubitemid 41262976)
37. YH Yang M Szabat C Bragagnini, et al. 2011 Paracrine signalling loops in adult human and mouse pancreatic islets: netrins modulate beta cell apoptosis signalling via dependence receptors Diabetologia 54 828 842 21212933 10.1007/s00125-010-2012-5 1:CAS:528:DC%2BC3MXivFCgsL8%3D
38. CR Gustavsen P Chevret B Krasnov G Mowlavi OD Madsen RS Heller 2008 The morphology of islets of Langerhans is only mildly affected by the lack of Pdx-1 in the pancreas of adult Meriones jirds Gen Comp Endocrinol 159 241 249 18845151 10.1016/j.ygcen.2008.08.017 1:CAS:528:DC%2BD1cXhsVSjsrbE
39. S Pechhold M Stouffer G Walker, et al. 2009 Transcriptional analysis of intracytoplasmically stained, FACS-purified cells by high-throughput, quantitative nuclease protection Nat Biotechnol 27 1038 1042 19838197 10.1038/nbt.1579 1:CAS:528:DC%2BD1MXht1Ogsr3P
40. F Cavodeassi J Modolell JL Gomez-Skarmeta 2001 The Iroquois family of genes: from body building to neural patterning Development 128 2847 2855 11532909 1:CAS:528:DC%2BD3MXmtlCrt7s%3D (Pubitemid 32771618)
41. P Collombat A Mansouri J Hecksher-Sorensen, et al. 2003 Opposing actions of Arx and Pax4 in endocrine pancreas development Genes Dev 17 2591 2603 14561778 10.1101/gad.269003 1:CAS:528:DC%2BD3sXotlWjtbw%3D (Pubitemid 37271428)
42. F Chen H Kook R Milewski, et al. 2002 Hop is an unusual homeobox gene that modulates cardiac development Cell 110 713 723 12297045 10.1016/S0092-8674(02)00932-7 1:CAS:528:DC%2BD38XnsFKis7g%3D (Pubitemid 35283961)
43. Z Yin L Gonzales V Kolla, et al. 2006 Hop functions downstream of Nkx2.1 and GATA6 to mediate HDAC-dependent negative regulation of pulmonary gene expression Am J Physiol Lung Cell Mol Physiol 291 L191 L199 16510470 10.1152/ajplung.00385.2005 1:CAS:528:DC%2BD28XovVWgu7Y%3D (Pubitemid 44148103)
44. N Sugo H Oshiro M Takemura, et al. 2010 Nucleocytoplasmic translocation of HDAC9 regulates gene expression and dendritic growth in developing cortical neurons Eur J Neurosci 31 1521 1532 20525066
45. RH Wong I Chang CS Hudak S Hyun HY Kwan HS Sul 2009 A role of DNA-PK for the metabolic gene regulation in response to insulin Cell 136 1056 1072 19303849 10.1016/j.cell.2008.12.040 1:CAS:528:DC%2BD1MXltFSntrY%3D
46. Q Zhou J Brown A Kanarek J Rajagopal DA Melton 2008 In vivo reprogramming of adult pancreatic exocrine cells to beta-cells Nature 455 627 632 18754011 10.1038/nature07314 1:CAS:528:DC%2BD1cXhtF2hsbvI
47. EB Pasquale 2008 Eph-ephrin bidirectional signaling in physiology and disease Cell 133 38 52 18394988 10.1016/j.cell.2008.03.011 1:CAS:528: DC%2BD1cXkslOlu7o%3D (Pubitemid 351442996)
48. I Konstantinova G Nikolova M Ohara-Imaizumi, et al. 2007 EphA-Ephrin-A-mediated beta cell communication regulates insulin secretion from pancreatic islets Cell 129 359 370 17448994 10.1016/j.cell.2007.02.044 1:CAS:528:DC%2BD2sXlsVWls7k%3D (Pubitemid 46574973)
49. P Hegyi Z Rakonczay Jr 2007 The inhibitory pathways of pancreatic ductal bicarbonate secretion Int J Biochem Cell Biol 39 25 30 16996776 10.1016/j.biocel.2006.07.011 1:CAS:528:DC%2BD28XhtVygt7%2FJ (Pubitemid 44548446)