-
1
-
-
33644555054
-
-
Nature 2006, 440, 631 - 6
-
(2006)
Nature
, vol.440
, pp. 631-6
-
-
-
2
-
-
9144264169
-
A Map of the Interactome Network of the Metazoan C. elegans
-
DOI 10.1126/science.1091403
-
Li, S.; Armstrong, C. M.; Bertin, N.; Ge, H.; Milstein, S.; Boxem, M.; Vidalain, P. O.; Han, J. D.; Chesneau, A.; Hao, T.; Goldberg, D. S.; Li, N.; Martinez, M.; Rual, J. F.; Lamesch, P.; Xu, L.; Tewari, M.; Wong, S. L.; Zhang, L. V.; Berriz, G. F.; Jacotot, L.; Vaglio, P.; Reboul, J.; Hirozane-Kishikawa, T.; Li, Q.; Gabel, H. W.; Elewa, A.; Baumgartner, B.; Rose, D. J.; Yu, H.; Bosak, S.; Sequerra, R.; Fraser, A.; Mango, S. E.; Saxton, W. M.; Strome, S.; Van Den Heuvel, S.; Piano, F.; Vandenhaute, J.; Sardet, C.; Gerstein, M.; Doucette-Stamm, L.; Gunsalus, K. C.; Harper, J. W.; Cusick, M. E.; Roth, F. P.; Hill, D. E.; Vidal, M. A map of the interactome network of the metazoan C. elegans Science 2004, 303 (5657) 540-3 (Pubitemid 38120855)
-
(2004)
Science
, vol.303
, Issue.5657
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.-O.7
Han, J.-D.J.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.-F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den Heuvel, S.V.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
3
-
-
0345600247
-
A Protein Interaction Map of Drosophila melanogaster
-
DOI 10.1126/science.1090289
-
Giot, L.; Bader, J. S.; Brouwer, C.; Chaudhuri, A.; Kuang, B.; Li, Y.; Hao, Y. L.; Ooi, C. E.; Godwin, B.; Vitols, E.; Vijayadamodar, G.; Pochart, P.; Machineni, H.; Welsh, M.; Kong, Y.; Zerhusen, B.; Malcolm, R.; Varrone, Z.; Collis, A.; Minto, M.; Burgess, S.; McDaniel, L.; Stimpson, E.; Spriggs, F.; Williams, J.; Neurath, K.; Ioime, N.; Agee, M.; Voss, E.; Furtak, K.; Renzulli, R.; Aanensen, N.; Carrolla, S.; Bickelhaupt, E.; Lazovatsky, Y.; DaSilva, A.; Zhong, J.; Stanyon, C. A.; Finley, R. L., Jr.; White, K. P.; Braverman, M.; Jarvie, T.; Gold, S.; Leach, M.; Knight, J.; Shimkets, R. A.; McKenna, M. P.; Chant, J.; Rothberg, J. M. A protein interaction map of Drosophila melanogaster Science 2003, 302 (5651) 1727-36 (Pubitemid 37505730)
-
(2003)
Science
, vol.302
, Issue.5651
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
Machineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
DaSilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley Jr., R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
4
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu, H.; Braun, P.; Yildirim, M. A.; Lemmens, I.; Venkatesan, K.; Sahalie, J.; Hirozane-Kishikawa, T.; Gebreab, F.; Li, N.; Simonis, N.; Hao, T.; Rual, J. F.; Dricot, A.; Vazquez, A.; Murray, R. R.; Simon, C.; Tardivo, L.; Tam, S.; Svrzikapa, N.; Fan, C.; de Smet, A. S.; Motyl, A.; Hudson, M. E.; Park, J.; Xin, X.; Cusick, M. E.; Moore, T.; Boone, C.; Snyder, M.; Roth, F. P.; Barabasi, A. L.; Tavernier, J.; Hill, D. E.; Vidal, M. High-quality binary protein interaction map of the yeast interactome network Science 2008, 322 (5898) 104-10
-
(2008)
Science
, vol.322
, Issue.5898
, pp. 104-10
-
-
Yu, H.1
Braun, P.2
Yildirim, M.A.3
Lemmens, I.4
Venkatesan, K.5
Sahalie, J.6
Hirozane-Kishikawa, T.7
Gebreab, F.8
Li, N.9
Simonis, N.10
Hao, T.11
Rual, J.F.12
Dricot, A.13
Vazquez, A.14
Murray, R.R.15
Simon, C.16
Tardivo, L.17
Tam, S.18
Svrzikapa, N.19
Fan, C.20
De Smet, A.S.21
Motyl, A.22
Hudson, M.E.23
Park, J.24
Xin, X.25
Cusick, M.E.26
Moore, T.27
Boone, C.28
Snyder, M.29
Roth, F.P.30
Barabasi, A.L.31
Tavernier, J.32
Hill, D.E.33
Vidal, M.34
more..
-
5
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
DOI 10.1038/nature04209, PII N04209
-
Rual, J. F.; Venkatesan, K.; Hao, T.; Hirozane-Kishikawa, T.; Dricot, A.; Li, N.; Berriz, G. F.; Gibbons, F. D.; Dreze, M.; Ayivi-Guedehoussou, N.; Klitgord, N.; Simon, C.; Boxem, M.; Milstein, S.; Rosenberg, J.; Goldberg, D. S.; Zhang, L. V.; Wong, S. L.; Franklin, G.; Li, S.; Albala, J. S.; Lim, J.; Fraughton, C.; Llamosas, E.; Cevik, S.; Bex, C.; Lamesch, P.; Sikorski, R. S.; Vandenhaute, J.; Zoghbi, H. Y.; Smolyar, A.; Bosak, S.; Sequerra, R.; Doucette-Stamm, L.; Cusick, M. E.; Hill, D. E.; Roth, F. P.; Vidal, M. Towards a proteome-scale map of the human protein-protein interaction network Nature 2005, 437 (7062) 1173-8 (Pubitemid 41509356)
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.-F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
6
-
-
55249110221
-
Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana
-
Dortay, H.; Gruhn, N.; Pfeifer, A.; Schwerdtner, M.; Schmulling, T.; Heyl, A. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana J. Proteome Res. 2008, 7 (9) 3649-60
-
(2008)
J. Proteome Res.
, vol.7
, Issue.9
, pp. 3649-60
-
-
Dortay, H.1
Gruhn, N.2
Pfeifer, A.3
Schwerdtner, M.4
Schmulling, T.5
Heyl, A.6
-
7
-
-
34347344977
-
Mutations in LCA5, encoding the ciliary protein lebercilin, cause Leber congenital amaurosis
-
DOI 10.1038/ng2066, PII NG2066
-
den Hollander, A. I.; Koenekoop, R. K.; Mohamed, M. D.; Arts, H. H.; Boldt, K.; Towns, K. V.; Sedmak, T.; Beer, M.; Nagel-Wolfrum, K.; McKibbin, M.; Dharmaraj, S.; Lopez, I.; Ivings, L.; Williams, G. A.; Springell, K.; Woods, C. G.; Jafri, H.; Rashid, Y.; Strom, T. M.; van der Zwaag, B.; Gosens, I.; Kersten, F. F.; van Wijk, E.; Veltman, J. A.; Zonneveld, M. N.; van Beersum, S. E.; Maumenee, I. H.; Wolfrum, U.; Cheetham, M. E.; Ueffing, M.; Cremers, F. P.; Inglehearn, C. F.; Roepman, R. Mutations in LCA5, encoding the ciliary protein lebercilin, cause Leber congenital amaurosis Nat. Genet. 2007, 39 (7) 889-95 (Pubitemid 47014498)
-
(2007)
Nature Genetics
, vol.39
, Issue.7
, pp. 889-895
-
-
Den Hollander, A.I.1
Koenekoop, R.K.2
Mohamed, M.D.3
Arts, H.H.4
Boldt, K.5
Towns, K.V.6
Sedmak, T.7
Beer, M.8
Nagel-Wolfrum, K.9
McKibbin, M.10
Dharmaraj, S.11
Lopez, I.12
Ivings, L.13
Williams, G.A.14
Springell, K.15
Woods, C.G.16
Jafri, H.17
Rashid, Y.18
Strom, T.M.19
Van Der Zwaag, B.20
Gosens, I.21
Kersten, F.F.J.22
Van Wijk, E.23
Veltman, J.A.24
Zonneveld, M.N.25
Van Beersum, S.E.C.26
Maumenee, I.H.27
Wolfrum, U.28
Cheetham, M.E.29
Ueffing, M.30
Cremers, F.P.M.31
Inglehearn, C.F.32
Roepman, R.33
more..
-
8
-
-
0031029388
-
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
-
DOI 10.1073/pnas.94.2.385
-
Neubauer, G.; Gottschalk, A.; Fabrizio, P.; Seraphin, B.; Luhrmann, R.; Mann, M. Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry Proc. Natl. Acad. Sci. U.S.A. 1997, 94 (2) 385-90 (Pubitemid 27053641)
-
(1997)
Proceedings of the National Academy of Sciences of the United States of America
, vol.94
, Issue.2
, pp. 385-390
-
-
Neubauer, G.1
Gottschalk, A.2
Fabrizioi, P.3
Seraphin, B.4
Luhrmann, R.5
Mann, M.6
-
9
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
DOI 10.1146/annurev.biochem.70.1.437
-
Mann, M.; Hendrickson, R. C.; Pandey, A. Analysis of proteins and proteomes by mass spectrometry Annu. Rev. Biochem. 2001, 70, 437-73 (Pubitemid 32662217)
-
(2001)
Annual Review of Biochemistry
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
10
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A. C.; Aloy, P.; Grandi, P.; Krause, R.; Boesche, M.; Marzioch, M.; Rau, C.; Jensen, L. J.; Bastuck, S.; Dumpelfeld, B.; Edelmann, A.; Heurtier, M. A.; Hoffman, V.; Hoefert, C.; Klein, K.; Hudak, M.; Michon, A. M.; Schelder, M.; Schirle, M.; Remor, M.; Rudi, T.; Hooper, S.; Bauer, A.; Bouwmeester, T.; Casari, G.; Drewes, G.; Neubauer, G.; Rick, J. M.; Kuster, B.; Bork, P.; Russell, R. B.; Superti-Furga, G. Proteome survey reveals modularity of the yeast cell machinery Nature 2006, 440 (7084) 631-6
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 631-6
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
11
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
DOI 10.1038/415141a
-
Gavin, A. C.; Bosche, M.; Krause, R.; Grandi, P.; Marzioch, M.; Bauer, A.; Schultz, J.; Rick, J. M.; Michon, A. M.; Cruciat, C. M.; Remor, M.; Hofert, C.; Schelder, M.; Brajenovic, M.; Ruffner, H.; Merino, A.; Klein, K.; Hudak, M.; Dickson, D.; Rudi, T.; Gnau, V.; Bauch, A.; Bastuck, S.; Huhse, B.; Leutwein, C.; Heurtier, M. A.; Copley, R. R.; Edelmann, A.; Querfurth, E.; Rybin, V.; Drewes, G.; Raida, M.; Bouwmeester, T.; Bork, P.; Seraphin, B.; Kuster, B.; Neubauer, G.; Superti-Furga, G. Functional organization of the yeast proteome by systematic analysis of protein complexes Nature 2002, 415 (6868) 141-7 (Pubitemid 34059510)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.-C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.-M.9
Cruciat, C.-M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.-A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
12
-
-
0037050004
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
-
DOI 10.1038/415180a
-
Ho, Y.; Gruhler, A.; Heilbut, A.; Bader, G. D.; Moore, L.; Adams, S. L.; Millar, A.; Taylor, P.; Bennett, K.; Boutilier, K.; Yang, L.; Wolting, C.; Donaldson, I.; Schandorff, S.; Shewnarane, J.; Vo, M.; Taggart, J.; Goudreault, M.; Muskat, B.; Alfarano, C.; Dewar, D.; Lin, Z.; Michalickova, K.; Willems, A. R.; Sassi, H.; Nielsen, P. A.; Rasmussen, K. J.; Andersen, J. R.; Johansen, L. E.; Hansen, L. H.; Jespersen, H.; Podtelejnikov, A.; Nielsen, E.; Crawford, J.; Poulsen, V.; Sorensen, B. D.; Matthiesen, J.; Hendrickson, R. C.; Gleeson, F.; Pawson, T.; Moran, M. F.; Durocher, D.; Mann, M.; Hogue, C. W.; Figeys, D.; Tyers, M. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Nature 2002, 415 (6868) 180-3 (Pubitemid 34059520)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 180-183
-
-
Ho, Y.1
Gruhler, A.2
Heilbut, A.3
Bader, G.D.4
Moore, L.5
Adams, S.-L.6
Millar, A.7
Taylor, P.8
Bennett, K.9
Boutilier, K.10
Yang, L.11
Wolting, C.12
Donaldson, I.13
Schandorff, S.14
Shewnarane, J.15
Vo, M.16
Taggart, J.17
Goudreault, M.18
Muskat, B.19
Alfarano, C.20
Dewar, D.21
Lin, Z.22
Michalickova, K.23
Willems, A.R.24
Sassi, H.25
Nielsen, P.A.26
Rasmussen, K.J.27
Andersen, J.R.28
Johansen, L.E.29
Hansen, L.H.30
Jespersen, H.31
Podtelejnikov, A.32
Nielsen, E.33
Crawford, J.34
Poulsen, V.35
Sorensen, B.D.36
Matthiesen, J.37
Hendrickson, R.C.38
Gleeson, F.39
Pawson, T.40
Moran, M.F.41
Durocher, D.42
Mann, M.43
Hogue, C.W.V.44
Figeys, D.45
Tyers, M.46
more..
-
13
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan, N. J.; Cagney, G.; Yu, H.; Zhong, G.; Guo, X.; Ignatchenko, A.; Li, J.; Pu, S.; Datta, N.; Tikuisis, A. P.; Punna, T.; Peregrin-Alvarez, J. M.; Shales, M.; Zhang, X.; Davey, M.; Robinson, M. D.; Paccanaro, A.; Bray, J. E.; Sheung, A.; Beattie, B.; Richards, D. P.; Canadien, V.; Lalev, A.; Mena, F.; Wong, P.; Starostine, A.; Canete, M. M.; Vlasblom, J.; Wu, S.; Orsi, C.; Collins, S. R.; Chandran, S.; Haw, R.; Rilstone, J. J.; Gandi, K.; Thompson, N. J.; Musso, G.; St Onge, P.; Ghanny, S.; Lam, M. H.; Butland, G.; Altaf-Ul, A. M.; Kanaya, S.; Shilatifard, A.; O'Shea, E.; Weissman, J. S.; Ingles, C. J.; Hughes, T. R.; Parkinson, J.; Gerstein, M.; Wodak, S. J.; Emili, A.; Greenblatt, J. F. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae Nature 2006, 440 (7084) 637-43
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 637-43
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrin-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
14
-
-
13444306676
-
CYGD: The Comprehensive Yeast Genome Database
-
Database Issue
-
Guldener, U.; Munsterkotter, M.; Kastenmuller, G.; Strack, N.; van Helden, J.; Lemer, C.; Richelles, J.; Wodak, S. J.; Garcia-Martinez, J.; Perez-Ortin, J. E.; Michael, H.; Kaps, A.; Talla, E.; Dujon, B.; Andre, B.; Souciet, J. L.; De Montigny, J.; Bon, E.; Gaillardin, C.; Mewes, H. W. CYGD: the Comprehensive Yeast Genome Database Nucleic Acids Res. 2005, 33 (Database issue) D364-8
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 364-8
-
-
Guldener, U.1
Munsterkotter, M.2
Kastenmuller, G.3
Strack, N.4
Van Helden, J.5
Lemer, C.6
Richelles, J.7
Wodak, S.J.8
Garcia-Martinez, J.9
Perez-Ortin, J.E.10
Michael, H.11
Kaps, A.12
Talla, E.13
Dujon, B.14
Andre, B.15
Souciet, J.L.16
De Montigny, J.17
Bon, E.18
Gaillardin, C.19
Mewes, H.W.20
more..
-
15
-
-
68449090023
-
Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions
-
Pache, R. A.; Babu, M. M.; Aloy, P. Exploiting gene deletion fitness effects in yeast to understand the modular architecture of protein complexes under different growth conditions BMC Syst. Biol. 2009, 3, 74
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 74
-
-
Pache, R.A.1
Babu, M.M.2
Aloy, P.3
-
16
-
-
39149104693
-
Are protein complexes made of cores, modules and attachments?
-
DOI 10.1002/pmic.200700801
-
Pang, C. N.; Krycer, J. R.; Lek, A.; Wilkins, M. R. Are protein complexes made of cores, modules and attachments? Proteomics 2008, 8 (3) 425-34 (Pubitemid 351252002)
-
(2008)
Proteomics
, vol.8
, Issue.3
, pp. 425-434
-
-
Pang, C.N.I.1
Krycer, J.R.2
Lek, A.3
Wilkins, M.R.4
-
17
-
-
38649099068
-
Interactive three-dimensional visualization and contextual analysis of protein interaction networks
-
DOI 10.1021/pr070274m
-
Ho, E.; Webber, R.; Wilkins, M. R. Interactive three-dimensional visualization and contextual analysis of protein interaction networks J. Proteome Res. 2008, 7 (1) 104-12 (Pubitemid 351171121)
-
(2008)
Journal of Proteome Research
, vol.7
, Issue.1
, pp. 104-112
-
-
Ho, E.1
Webber, R.2
Wilkins, M.R.3
-
18
-
-
10844254729
-
Shared components of protein complexes - Versatile building blocks or biochemical artefacts?
-
DOI 10.1002/bies.20141
-
Krause, R.; von Mering, C.; Bork, P.; Dandekar, T. Shared components of protein complexes - versatile building blocks or biochemical artefacts? Bioessays 2004, 26 (12) 1333-43 (Pubitemid 39664627)
-
(2004)
BioEssays
, vol.26
, Issue.12
, pp. 1333-1343
-
-
Krause, R.1
Von Mering, C.2
Bork, P.3
Dandekar, T.4
-
19
-
-
34249653071
-
Towards zoomable multidimensional maps of the cell
-
DOI 10.1038/nbt1304, PII NBT1304
-
Hu, Z.; Mellor, J.; Wu, J.; Kanehisa, M.; Stuart, J. M.; DeLisi, C. Towards zoomable multidimensional maps of the cell Nat. Biotechnol. 2007, 25 (5) 547-54 (Pubitemid 46834845)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.5
, pp. 547-554
-
-
Hu, Z.1
Mellor, J.2
Wu, J.3
Kanehisa, M.4
Stuart, J.M.5
DeLisi, C.6
-
20
-
-
34547787599
-
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality
-
Hart, G. T.; Lee, I.; Marcotte, E. R. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality BMC Bioinform. 2007, 8, 236
-
(2007)
BMC Bioinform.
, vol.8
, pp. 236
-
-
Hart, G.T.1
Lee, I.2
Marcotte, E.R.3
-
21
-
-
77955478355
-
A consensus of core protein complex compositions for Saccharomyces cerevisiae
-
Benschop, J. J.; Brabers, N.; van Leenen, D.; Bakker, L. V.; van Deutekom, H. W.; van Berkum, N. L.; Apweiler, E.; Lijnzaad, P.; Holstege, F. C.; Kemmeren, P. A consensus of core protein complex compositions for Saccharomyces cerevisiae Mol. Cell 2010, 38 (6) 916-28
-
(2010)
Mol. Cell
, vol.38
, Issue.6
, pp. 916-28
-
-
Benschop, J.J.1
Brabers, N.2
Van Leenen, D.3
Bakker, L.V.4
Van Deutekom, H.W.5
Van Berkum, N.L.6
Apweiler, E.7
Lijnzaad, P.8
Holstege, F.C.9
Kemmeren, P.10
-
22
-
-
67649641077
-
A complex-based reconstruction of the Saccharomyces cerevisiae interactome
-
Wang, H.; Kakaradov, B.; Collins, S. R.; Karotki, L.; Fiedler, D.; Shales, M.; Shokat, K. M.; Walther, T. C.; Krogan, N. J.; Koller, D. A complex-based reconstruction of the Saccharomyces cerevisiae interactome Mol. Cell. Proteomics 2009, 8 (6) 1361-81
-
(2009)
Mol. Cell. Proteomics
, vol.8
, Issue.6
, pp. 1361-81
-
-
Wang, H.1
Kakaradov, B.2
Collins, S.R.3
Karotki, L.4
Fiedler, D.5
Shales, M.6
Shokat, K.M.7
Walther, T.C.8
Krogan, N.J.9
Koller, D.10
-
23
-
-
0031858914
-
SGD: Saccharomyces genome database
-
DOI 10.1093/nar/26.1.73
-
Cherry, J. M.; Adler, C.; Ball, C.; Chervitz, S. A.; Dwight, S. S.; Hester, E. T.; Jia, Y.; Juvik, G.; Roe, T.; Schroeder, M.; Weng, S.; Botstein, D. SGD: Saccharomyces Genome Database Nucleic Acids Res. 1998, 26 (1) 73-9 (Pubitemid 28295265)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.1
, pp. 73-79
-
-
Cherry, J.M.1
Adler, C.2
Ball, C.3
Chervitz, S.A.4
Dwight, S.S.5
Hester, E.T.6
Jia, Y.7
Juvik, G.8
Roe, T.9
Schroeder, M.10
Weng, S.11
Botstein, D.12
-
24
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
DOI 10.1038/75556
-
Ashburner, M.; Ball, C. A.; Blake, J. A.; Botstein, D.; Butler, H.; Cherry, J. M.; Davis, A. P.; Dolinski, K.; Dwight, S. S.; Eppig, J. T.; Harris, M. A.; Hill, D. P.; Issel-Tarver, L.; Kasarskis, A.; Lewis, S.; Matese, J. C.; Richardson, J. E.; Ringwald, M.; Rubin, G. M.; Sherlock, G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium Nat. Genet. 2000, 25 (1) 25-9 (Pubitemid 30257031)
-
(2000)
Nature Genetics
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
25
-
-
9144232912
-
UniProt: The Universal Protein knowledgebase
-
Database Issue
-
Apweiler, R.; Bairoch, A.; Wu, C. H.; Barker, W. C.; Boeckmann, B.; Ferro, S.; Gasteiger, E.; Huang, H.; Lopez, R.; Magrane, M.; Martin, M. J.; Natale, D. A.; O'Donovan, C.; Redaschi, N.; Yeh, L. S. UniProt: the Universal Protein knowledgebase Nucleic Acids Res. 2004, 32 (Database issue) D115-9
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 115-9
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
Gasteiger, E.7
Huang, H.8
Lopez, R.9
Magrane, M.10
Martin, M.J.11
Natale, D.A.12
O'Donovan, C.13
Redaschi, N.14
Yeh, L.S.15
-
26
-
-
80053927052
-
-
Proceeding of 13th International Symposium on Graph Drawing, Limerick, Ireland, September
-
Ahmed, A. D. T.; Forster, M.; Fu, X.; Ho, J.; Hong, S.-H.; Koschutzki, D.; Murray, C.; Nikolov, N. S.; Taib, R.; Tarassov, A.; Xu, K In GEOMI: GEOmetry for Maximum Insight; Proceeding of 13th International Symposium on Graph Drawing, Limerick, Ireland, September 2005; pp 468-479.
-
(2005)
GEOMI: GEOmetry for Maximum Insight
, pp. 468-479
-
-
Ahmed, A.D.T.1
Forster, M.2
Fu, X.3
Ho, J.4
Hong, S.-H.5
Koschutzki, D.6
Murray, C.7
Nikolov, N.S.8
Taib, R.9
Tarassov, A.10
Xu, K.11
-
27
-
-
84855697587
-
-
Java Universal Network/Graph Framework; (accessed 1/2/07)
-
Fisher, D.; O'Madadhain, J.; Smyth, P.; White, S.; Boey, Y.-B. Java Universal Network/Graph Framework; http://jung.sourceforge.net (accessed 1/2/07).
-
-
-
Fisher, D.1
O'Madadhain, J.2
Smyth, P.3
White, S.4
Boey, Y.-B.5
-
28
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
DOI 10.1038/nrg1272
-
Barabasi, A. L.; Oltvai, Z. N. Network biology: understanding the cell's functional organization Nat. Rev. Genet. 2004, 5 (2) 101-13 (Pubitemid 38160277)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.2
, pp. 101-113
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
29
-
-
79959715936
-
Four-dimensional visualisation and analysis of protein-protein interaction networks
-
Goel, A.; Li, S. S.; Wilkins, M. R. Four-dimensional visualisation and analysis of protein-protein interaction networks Proteomics 2011, 11 (13) 2672-82
-
(2011)
Proteomics
, vol.11
, Issue.13
, pp. 2672-82
-
-
Goel, A.1
Li, S.S.2
Wilkins, M.R.3
-
30
-
-
27944493925
-
Scale-free networks in cell biology
-
DOI 10.1242/jcs.02714
-
Albert, R. Scale-free networks in cell biology J. Cell Sci. 2005, 118 (Pt 21) 4947-57 (Pubitemid 41672427)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.21
, pp. 4947-4957
-
-
Albert, R.1
-
31
-
-
33645714845
-
Scale-free networks with an exponent less than two
-
Seyed-Allaei, H.; Bianconi, G.; Marsili, M. Scale-free networks with an exponent less than two Phys. Rev. E: Stat. Nonlin. Soft Matter Phys. 2006, 73 (4 Pt 2) 046113
-
(2006)
Phys. Rev. E: Stat. Nonlin. Soft Matter Phys.
, vol.73
, Issue.4 PART 2
, pp. 046113
-
-
Seyed-Allaei, H.1
Bianconi, G.2
Marsili, M.3
-
32
-
-
34247622363
-
The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
-
Yu, H.; Kim, P. M.; Sprecher, E.; Trifonov, V.; Gerstein, M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics PLoS Comput Biol 2007, 3 (4) e59
-
(2007)
PLoS Comput Biol
, vol.3
, Issue.4
, pp. 59
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
33
-
-
0346753737
-
Hierarchical assembly of the budding yeast kinetochore from multiple subcomplexes
-
DOI 10.1101/gad.1144403
-
De Wulf, P.; McAinsh, A. D.; Sorger, P. K. Hierarchical assembly of the budding yeast kinetochore from multiple subcomplexes Genes Dev. 2003, 17 (23) 2902-21 (Pubitemid 37523155)
-
(2003)
Genes and Development
, vol.17
, Issue.23
, pp. 2902-2921
-
-
De Wulf, P.1
McAinsh, A.D.2
Sorger, P.K.3
-
34
-
-
0031566379
-
β3A-Adaptin, a subunit of the adaptor-like complex AP-3
-
DOI 10.1074/jbc.272.24.15078
-
Dell'Angelica, E. C.; Ooi, C. E.; Bonifacino, J. S. Beta3A-adaptin, a subunit of the adaptor-like complex AP-3 J. Biol. Chem. 1997, 272 (24) 15078-84 (Pubitemid 27255520)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.24
, pp. 15078-15084
-
-
Dell'Angelica, E.C.1
Ooi, C.E.2
Bonifacino, J.S.3
-
35
-
-
17844390103
-
Novel specificities emerge by stepwise duplication of functional modules
-
DOI 10.1101/gr.3102105
-
Pereira-Leal, J. B.; Teichmann, S. A. Novel specificities emerge by stepwise duplication of functional modules Genome Res. 2005, 15 (4) 552-9 (Pubitemid 41057817)
-
(2005)
Genome Research
, vol.15
, Issue.4
, pp. 552-559
-
-
Pereira-Leal, J.B.1
Teichmann, S.A.2
-
36
-
-
0036948420
-
Allosteric cascade of spliceosome activation
-
DOI 10.1146/annurev.genet.36.043002.091635
-
Brow, D. A. Allosteric cascade of spliceosome activation Annu. Rev. Genet. 2002, 36, 333-60 (Pubitemid 36109193)
-
(2002)
Annual Review of Genetics
, vol.36
, pp. 333-360
-
-
Brow, D.A.1
-
37
-
-
56849103665
-
The control of mRNA decapping and P-body formation
-
Franks, T. M.; Lykke-Andersen, J. The control of mRNA decapping and P-body formation Mol. Cell 2008, 32 (5) 605-15
-
(2008)
Mol. Cell
, vol.32
, Issue.5
, pp. 605-15
-
-
Franks, T.M.1
Lykke-Andersen, J.2
-
39
-
-
0032504104
-
A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation
-
DOI 10.1016/S0092-8674(00)81220-9
-
Grant, P. A.; Schieltz, D.; Pray-Grant, M. G.; Steger, D. J.; Reese, J. C.; Yates, J. R., 3rd; Workman, J. L. A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation Cell 1998, 94 (1) 45-53 (Pubitemid 28347468)
-
(1998)
Cell
, vol.94
, Issue.1
, pp. 45-53
-
-
Grant, P.A.1
Schieltz, D.2
Pray-Grant, M.G.3
Steger, D.J.4
Reese, J.C.5
Yates III, J.R.6
Workman, J.L.7
-
40
-
-
66049096618
-
The basal initiation machinery: Beyond the general transcription factors
-
Sikorski, T. W.; Buratowski, S. The basal initiation machinery: beyond the general transcription factors Curr. Opin. Cell Biol. 2009, 21 (3) 344-51
-
(2009)
Curr. Opin. Cell Biol.
, vol.21
, Issue.3
, pp. 344-51
-
-
Sikorski, T.W.1
Buratowski, S.2
-
41
-
-
34247565469
-
Functional and physical interactions between yeast 14-3-3 proteins, acetyltransferases, and deacetylases in response to DNA replication perturbations
-
DOI 10.1128/MCB.01767-06
-
Lottersberger, F.; Panza, A.; Lucchini, G.; Longhese, M. P. Functional and physical interactions between yeast 14-3-3 proteins, acetyltransferases, and deacetylases in response to DNA replication perturbations Mol. Cell. Biol. 2007, 27 (9) 3266-81 (Pubitemid 46685206)
-
(2007)
Molecular and Cellular Biology
, vol.27
, Issue.9
, pp. 3266-3281
-
-
Lottersberger, F.1
Panza, A.2
Lucchini, G.3
Longhese, M.P.4
-
42
-
-
34047248383
-
Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36
-
DOI 10.1074/jbc.C600286200
-
Shi, X.; Kachirskaia, I.; Walter, K. L.; Kuo, J. H.; Lake, A.; Davrazou, F.; Chan, S. M.; Martin, D. G.; Fingerman, I. M.; Briggs, S. D.; Howe, L.; Utz, P. J.; Kutateladze, T. G.; Lugovskoy, A. A.; Bedford, M. T.; Gozani, O. Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36 J. Biol. Chem. 2007, 282 (4) 2450-5 (Pubitemid 47076750)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.4
, pp. 2450-2455
-
-
Shi, X.1
Kachirskaia, I.2
Walter, K.L.3
Kuo, J.-H.A.4
Lake, A.5
Davrazou, F.6
Chan, S.M.7
Martin, D.G.E.8
Fingerman, I.M.9
Briggs, S.D.10
Howe, L.11
Utz, P.J.12
Kutateladze, T.G.13
Lugovskoy, A.A.14
Bedford, M.T.15
Gozani, O.16
-
43
-
-
77956394091
-
Calmodulin dissociation regulates Myo5 recruitment and function at endocytic sites
-
Grotsch, H.; Giblin, J. P.; Idrissi, F. Z.; Fernandez-Golbano, I. M.; Collette, J. R.; Newpher, T. M.; Robles, V.; Lemmon, S. K.; Geli, M. I. Calmodulin dissociation regulates Myo5 recruitment and function at endocytic sites EMBO J. 2010, 29 (17) 2899-914
-
(2010)
EMBO J.
, vol.29
, Issue.17
, pp. 2899-914
-
-
Grotsch, H.1
Giblin, J.P.2
Idrissi, F.Z.3
Fernandez-Golbano, I.M.4
Collette, J.R.5
Newpher, T.M.6
Robles, V.7
Lemmon, S.K.8
Geli, M.I.9
-
44
-
-
0141482078
-
Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis
-
DOI 10.1073/pnas.2033246100
-
Shepard, K. A.; Gerber, A. P.; Jambhekar, A.; Takizawa, P. A.; Brown, P. O.; Herschlag, D.; DeRisi, J. L.; Vale, R. D. Widespread cytoplasmic mRNA transport in yeast: identification of 22 bud-localized transcripts using DNA microarray analysis Proc. Natl. Acad. Sci. U.S.A. 2003, 100 (20) 11429-34 (Pubitemid 37205952)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.20
, pp. 11429-11434
-
-
Shepard, K.A.1
Gerber, A.P.2
Jambhekar, A.3
Takizawa, P.A.4
Brown, P.O.5
Herschlag, D.6
DeRisi, J.L.7
Vale, R.D.8
-
45
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
DOI 10.1038/nature02555
-
Han, J. D.; Bertin, N.; Hao, T.; Goldberg, D. S.; Berriz, G. F.; Zhang, L. V.; Dupuy, D.; Walhout, A. J.; Cusick, M. E.; Roth, F. P.; Vidal, M. Evidence for dynamically organized modularity in the yeast protein-protein interaction network Nature 2004, 430 (6995) 88-93 (Pubitemid 38915230)
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 88-93
-
-
Han, J.-D.J.1
Berlin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
Zhang, L.V.6
Dupuy, D.7
Walhout, A.J.M.8
Cusick, M.E.9
Roth, F.P.10
Vidal, M.11
-
46
-
-
58049161508
-
Roles of eukaryotic Lsm proteins in the regulation of mRNA function
-
Tharun, S. Roles of eukaryotic Lsm proteins in the regulation of mRNA function Int. Rev. Cell. Mol. Biol. 2009, 272, 149-89
-
(2009)
Int. Rev. Cell. Mol. Biol.
, vol.272
, pp. 149-89
-
-
Tharun, S.1
-
47
-
-
77955929156
-
The function of the NineTeen Complex (NTC) in regulating spliceosome conformations and fidelity during pre-mRNA splicing
-
Hogg, R.; McGrail, J. C.; O'Keefe, R. T. The function of the NineTeen Complex (NTC) in regulating spliceosome conformations and fidelity during pre-mRNA splicing Biochem. Soc. Trans. 2010, 38 (4) 1110-5
-
(2010)
Biochem. Soc. Trans.
, vol.38
, Issue.4
, pp. 1110-5
-
-
Hogg, R.1
McGrail, J.C.2
O'Keefe, R.T.3
-
48
-
-
0141924550
-
The Prp19p-associated complex in spliceosome activation
-
Chan, S. P.; Kao, D. I.; Tsai, W. Y.; Cheng, S. C. The Prp19p-associated complex in spliceosome activation Science 2003, 302 (5643) 279-82
-
(2003)
Science
, vol.302
, Issue.5643
, pp. 279-82
-
-
Chan, S.P.1
Kao, D.I.2
Tsai, W.Y.3
Cheng, S.C.4
-
49
-
-
0142215475
-
Global analysis of protein expression in yeast
-
DOI 10.1038/nature02046
-
Ghaemmaghami, S.; Huh, W. K.; Bower, K.; Howson, R. W.; Belle, A.; Dephoure, N.; O'Shea, E. K.; Weissman, J. S. Global analysis of protein expression in yeast Nature 2003, 425 (6959) 737-41 (Pubitemid 37314318)
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.-K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
50
-
-
38349030753
-
Requirements for nuclear localization of the Lsm2-8p complex and competition between nuclear and cytoplasmic Lsm complexes
-
Spiller, M. P.; Reijns, M. A.; Beggs, J. D. Requirements for nuclear localization of the Lsm2-8p complex and competition between nuclear and cytoplasmic Lsm complexes J. Cell Sci. 2007, 120 (Pt 24) 4310-20
-
(2007)
J. Cell Sci.
, vol.120
, Issue.PART 24
, pp. 4310-20
-
-
Spiller, M.P.1
Reijns, M.A.2
Beggs, J.D.3
-
51
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
DOI 10.1126/science.1082320
-
Sheth, U.; Parker, R. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies Science 2003, 300 (5620) 805-8 (Pubitemid 36532117)
-
(2003)
Science
, vol.300
, Issue.5620
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
52
-
-
34147121646
-
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
-
DOI 10.1074/mcp.M600381-MCP200
-
Collins, S. R.; Kemmeren, P.; Zhao, X. C.; Greenblatt, J. F.; Spencer, F.; Holstege, F. C.; Weissman, J. S.; Krogan, N. J. Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae Mol. Cell. Proteomics 2007, 6 (3) 439-50 (Pubitemid 46554539)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.3
, pp. 439-450
-
-
Collins, S.R.1
Kemmeren, P.2
Zhao, X.-C.3
Greenblatt, J.F.4
Spencer, F.5
Hoolstege, F.C.P.6
Weissman, J.S.7
Krogan, N.J.8
-
53
-
-
33947730844
-
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
-
DOI 10.1002/pmic.200600636
-
Pu, S.; Vlasblom, J.; Emili, A.; Greenblatt, J.; Wodak, S. J. Identifying functional modules in the physical interactome of Saccharomyces cerevisiae Proteomics 2007, 7 (6) 944-60 (Pubitemid 46506741)
-
(2007)
Proteomics
, vol.7
, Issue.6
, pp. 944-960
-
-
Pu, S.1
Vlasblom, J.2
Emili, A.3
Greenblatt, J.4
Wodak, S.J.5
-
54
-
-
79954507616
-
Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes
-
Fasolo, J.; Sboner, A.; Sun, M. G.; Yu, H.; Chen, R.; Sharon, D.; Kim, P. M.; Gerstein, M.; Snyder, M. Diverse protein kinase interactions identified by protein microarrays reveal novel connections between cellular processes Genes Dev. 2011, 25 (7) 767-78
-
(2011)
Genes Dev.
, vol.25
, Issue.7
, pp. 767-78
-
-
Fasolo, J.1
Sboner, A.2
Sun, M.G.3
Yu, H.4
Chen, R.5
Sharon, D.6
Kim, P.M.7
Gerstein, M.8
Snyder, M.9
-
55
-
-
79952474742
-
Protein complexes are central in the yeast genetic landscape
-
Michaut, M.; Baryshnikova, A.; Costanzo, M.; Myers, C. L.; Andrews, B. J.; Boone, C.; Bader, G. D. Protein complexes are central in the yeast genetic landscape PLoS Comput. Biol. 2011, 7 (2) e1001092
-
(2011)
PLoS Comput. Biol.
, vol.7
, Issue.2
, pp. 1001092
-
-
Michaut, M.1
Baryshnikova, A.2
Costanzo, M.3
Myers, C.L.4
Andrews, B.J.5
Boone, C.6
Bader, G.D.7
-
56
-
-
0025982039
-
The role of actin polymerization in cell motility
-
Cooper, J. A. The role of actin polymerization in cell motility Annu. Rev. Physiol. 1991, 53, 585-605
-
(1991)
Annu. Rev. Physiol.
, vol.53
, pp. 585-605
-
-
Cooper, J.A.1
-
57
-
-
0035067367
-
Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly
-
DOI 10.1038/35070067
-
Seol, J. H.; Shevchenko, A.; Deshaies, R. J. Skp1 forms multiple protein complexes, including RAVE, a regulator of V-ATPase assembly Nat. Cell Biol. 2001, 3 (4) 384-91 (Pubitemid 32288446)
-
(2001)
Nature Cell Biology
, vol.3
, Issue.4
, pp. 384-391
-
-
Seol, J.H.1
Shevchenko, A.2
Shevchenko, A.3
Deshaies, R.J.4
-
58
-
-
72449139643
-
Distinct subsets of Sit4 holophosphatases are required for inhibition of Saccharomyces cerevisiae growth by rapamycin and zymocin
-
Jablonowski, D.; Taubert, J. E.; Bar, C.; Stark, M. J.; Schaffrath, R. Distinct subsets of Sit4 holophosphatases are required for inhibition of Saccharomyces cerevisiae growth by rapamycin and zymocin Eukaryot. Cell 2009, 8 (11) 1637-47
-
(2009)
Eukaryot. Cell
, vol.8
, Issue.11
, pp. 1637-47
-
-
Jablonowski, D.1
Taubert, J.E.2
Bar, C.3
Stark, M.J.4
Schaffrath, R.5
-
59
-
-
11844270415
-
Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export
-
DOI 10.1101/gad.1267005
-
Dunn, E. F.; Hammell, C. M.; Hodge, C. A.; Cole, C. N. Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export Genes Dev. 2005, 19 (1) 90-103 (Pubitemid 40095819)
-
(2005)
Genes and Development
, vol.19
, Issue.1
, pp. 90-103
-
-
Dunn, E.F.1
Hammell, C.M.2
Hodge, C.A.3
Cole, C.N.4
-
60
-
-
25444441167
-
ATP-dependent chromatin remodeling and DNA double-strand break repair
-
van Attikum, H.; Gasser, S. M. ATP-dependent chromatin remodeling and DNA double-strand break repair Cell Cycle 2005, 4 (8) 1011-4 (Pubitemid 41365352)
-
(2005)
Cell Cycle
, vol.4
, Issue.8
, pp. 1011-1014
-
-
Van Attikum, H.1
Gasser, S.M.2
-
61
-
-
0027475974
-
DNA repair synthesis during base excision repair in vitro is catalyzed by DNA polymerase ε and is influenced by DNA polymerases α and δ in Saccharomyces cerevisiae
-
Wang, Z.; Wu, X.; Friedberg, E. C. DNA repair synthesis during base excision repair in vitro is catalyzed by DNA polymerase epsilon and is influenced by DNA polymerases alpha and delta in Saccharomyces cerevisiae Mol. Cell. Biol. 1993, 13 (2) 1051-8 (Pubitemid 23040272)
-
(1993)
Molecular and Cellular Biology
, vol.13
, Issue.2
, pp. 1051-1058
-
-
Wang, Z.1
Wu, X.2
Friedberg, E.C.3
-
62
-
-
34547096484
-
A second proliferating cell nuclear antigen loader complex, Ctf18-replication factor C, stimulates DNA polymerase η activity
-
DOI 10.1074/jbc.M610102200
-
Shiomi, Y.; Masutani, C.; Hanaoka, F.; Kimura, H.; Tsurimoto, T. A second proliferating cell nuclear antigen loader complex, Ctf18-replication factor C, stimulates DNA polymerase eta activity J. Biol. Chem. 2007, 282 (29) 20906-14 (Pubitemid 47099896)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.29
, pp. 20906-20914
-
-
Shiomi, Y.1
Masutani, C.2
Hanaoka, F.3
Kimura, H.4
Tsurimoto, T.5
-
63
-
-
0036190131
-
Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants: A case study of endosymbiotic gene transfer
-
DOI 10.1046/j.0014-2956.2001.02722.x
-
Schnarrenberger, C.; Martin, W. Evolution of the enzymes of the citric acid cycle and the glyoxylate cycle of higher plants. A case study of endosymbiotic gene transfer Eur. J. Biochem. 2002, 269 (3) 868-83 (Pubitemid 34175407)
-
(2002)
European Journal of Biochemistry
, vol.269
, Issue.3
, pp. 868-883
-
-
Schnarrenberger, C.1
Martin, W.2
-
64
-
-
0030016595
-
Structure and functions of the 20S and 26S proteasomes
-
Coux, O.; Tanaka, K.; Goldberg, A. L. Structure and functions of the 20S and 26S proteasomes Annu. Rev. Biochem. 1996, 65, 801-47 (Pubitemid 26255262)
-
(1996)
Annual Review of Biochemistry
, vol.65
, pp. 801-847
-
-
Coux, O.1
Tanaka, K.2
Goldberg, A.L.3
-
65
-
-
40649121318
-
The Glc7 Phosphatase Subunit of the Cleavage and Polyadenylation Factor Is Essential for Transcription Termination on snoRNA Genes
-
DOI 10.1016/j.molcel.2007.12.031, PII S109727650800124X
-
Nedea, E.; Nalbant, D.; Xia, D.; Theoharis, N. T.; Suter, B.; Richardson, C. J.; Tatchell, K.; Kislinger, T.; Greenblatt, J. F.; Nagy, P. L. The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes Mol. Cell 2008, 29 (5) 577-87 (Pubitemid 351374686)
-
(2008)
Molecular Cell
, vol.29
, Issue.5
, pp. 577-587
-
-
Nedea, E.1
Nalbant, D.2
Xia, D.3
Theoharis, N.T.4
Suter, B.5
Richardson, C.J.6
Tatchell, K.7
Kislinger, T.8
Greenblatt, J.F.9
Nagy, P.L.10
-
66
-
-
22144471563
-
Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking
-
DOI 10.1534/genetics.104.040063
-
Friesen, H.; Colwill, K.; Robertson, K.; Schub, O.; Andrews, B. Interaction of the Saccharomyces cerevisiae cortical actin patch protein Rvs167p with proteins involved in ER to Golgi vesicle trafficking Genetics 2005, 170 (2) 555-68 (Pubitemid 40980659)
-
(2005)
Genetics
, vol.170
, Issue.2
, pp. 555-568
-
-
Friesen, H.1
Colwill, K.2
Robertson, K.3
Schub, O.4
Andrews, B.5
-
67
-
-
0027306799
-
Genetics of eukaryotic RNA polymerases I, II, and III
-
Archambault, J.; Friesen, J. D. Genetics of eukaryotic RNA polymerases I, II, and III Microbiol. Rev. 1993, 57 (3) 703-24 (Pubitemid 23262515)
-
(1993)
Microbiological Reviews
, vol.57
, Issue.3
, pp. 703-724
-
-
Archambault, J.1
Friesen, J.D.2
-
68
-
-
0038795548
-
Ras recruits mitotic exit regulator Lte1 to the bud cortex in budding yeast
-
DOI 10.1083/jcb.200301128
-
Yoshida, S.; Ichihashi, R.; Toh-e, A. Ras recruits mitotic exit regulator Lte1 to the bud cortex in budding yeast J. Cell Biol. 2003, 161 (5) 889-97 (Pubitemid 36718422)
-
(2003)
Journal of Cell Biology
, vol.161
, Issue.5
, pp. 889-897
-
-
Yoshida, S.1
Ichihashi, R.2
Toh-e, A.3
-
69
-
-
33745118350
-
Regulation of the cell cycle by protein phosphatase 2A in Saccharomyces cerevisiae
-
DOI 10.1128/MMBR.00049-05
-
Jiang, Y. Regulation of the cell cycle by protein phosphatase 2A in Saccharomyces cerevisiae Microbiol. Mol. Biol. Rev. 2006, 70 (2) 440-9 (Pubitemid 43895033)
-
(2006)
Microbiology and Molecular Biology Reviews
, vol.70
, Issue.2
, pp. 440-449
-
-
Jiang, Y.1
-
70
-
-
0036469214
-
The yin and yang of the exosome
-
DOI 10.1016/S0962-8924(01)02225-5, PII S0962892401022255
-
Butler, J. S. The yin and yang of the exosome Trends Cell Biol. 2002, 12 (2) 90-6 (Pubitemid 34146525)
-
(2002)
Trends in Cell Biology
, vol.12
, Issue.2
, pp. 90-96
-
-
Butler J.Scott1
|