GENE-counter: A computational pipeline for the analysis of RNA-seq data for gene expression differences

PLoS ONE

Volumn 6, Issue 10, 2011, Pages

  Cumbie, Jason S ^a   Kimbrel, Jeffrey A ^a   Di, Yanming ^a   Schafer, Daniel W ^a   Wilhelm, Larry J ^a,b   Fox, Samuel E ^a   Sullivan, Christopher M ^a   Curzon, Aron D ^a   Carrington, James C ^a,c   Mockler, Todd C ^a,c   Chang, Jeff H ^a  

^a OREGON STATE UNIVERSITY   (United States)

^b OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^c DONALD DANFORTH PLANT SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARTICLE; BINOMIAL DISTRIBUTION; COMPUTER SYSTEM; CONTROLLED STUDY; DATA ANALYSIS; GENE EXPRESSION; GENETIC ASSOCIATION; GENETIC DATABASE; GENETIC VARIABILITY; MATHEMATICAL COMPUTING; MICROARRAY ANALYSIS; NONHUMAN; PIPELINE; PROCESS DEVELOPMENT; QUALITY CONTROL; RNA ANALYSIS; RNA SEQUENCE; SEQUENCE ALIGNMENT; STATISTICAL MODEL; BIOLOGY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETICS; GENOMICS; IMMUNOLOGY; METHODOLOGY; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; STATISTICAL ANALYSIS;

ARABIDOPSIS THALIANA; EUKARYOTA; PROKARYOTA;

ARABIDOPSIS; BENCHMARKING; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DATA INTERPRETATION, STATISTICAL; DATABASES, GENETIC; GENE EXPRESSION PROFILING; GENOMICS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SEQUENCE ANALYSIS, RNA;

EID: 80053610809     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0025279     Document Type: Article

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