-
1
-
-
77952148742
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
-
Guttman,M. et al. (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol., 28, 503-510.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 503-510
-
-
Guttman, M.1
-
3
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead,B. et al. (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol., 10, R25.
-
(2009)
Genome Biol.
, vol.10
-
-
Langmead, B.1
-
4
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler Transform
-
Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
5
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
Li,H. et al. (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
6
-
-
70349866687
-
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
-
Morgan,M. et al. (2009) ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. Bioinformatics, 25, 2607-2608.
-
(2009)
Bioinformatics
, vol.25
, pp. 2607-2608
-
-
Morgan, M.1
-
7
-
-
77950458649
-
Transcriptome genetics using second generation sequencing in a Caucasian population
-
Montgomery,S. et al. (2010) Transcriptome genetics using second generation sequencing in a Caucasian population. Nature, 464, 773-777.
-
(2010)
Nature
, vol.464
, pp. 773-777
-
-
Montgomery, S.1
-
8
-
-
58149204055
-
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression
-
Parkinson,H. et al. (2008) ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Res., 37, D868-D872.
-
(2008)
Nucleic Acids Res.
, vol.37
-
-
Parkinson, H.1
-
9
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner,T. et al. (2006) A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics, 7, 489.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.1
-
10
-
-
77954492012
-
Cloud computing and the DNA data race
-
Schatz,M. et al. (2010) Cloud computing and the DNA data race. Nature Biotechnol., 28, 691-693.
-
(2010)
Nature Biotechnol.
, vol.28
, pp. 691-693
-
-
Schatz, M.1
-
11
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell,C. et al. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
-
12
-
-
77952123055
-
Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell,C. et al. (2010) Transcript assembly and quantification by RNA-seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnol., 28, 511-515.
-
(2010)
Nature Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
13
-
-
79751531332
-
Haplotype and isoform specific expression estimation using multimapping RNA-seq reads
-
Turro,E. et al. (2011) Haplotype and isoform specific expression estimation using multimapping RNA-seq reads. Genome Biol., 12, R13.
-
(2011)
Genome Biol.
, vol.12
-
-
Turro, E.1
-
14
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
Wang,E. et al. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476.
-
(2008)
Nature
, vol.456
, pp. 470-476
-
-
Wang, E.1
|