-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. and W. Huber (2010): "Differential expression analysis for sequence count data", Genome Biol, 11, R106.
-
(2010)
Genome Biol.
, vol.11
-
-
Anders, S.1
Huber, W.2
-
3
-
-
79958101494
-
Gene-counter: A computational and statistical pipeline for assessing RNA-seq data for genome-wide expression differences
-
Cumbie, J. S., J. A. Kimbrel, Y. Di, D. W. Schafer, L. J. Whilhelm, S. E. Fox, C. M. Sullivan, A. D. Curzon, J. C. Carrington, T. C. Mockler, and J. H. Chang (2011): "Gene-counter: a computational and statistical pipeline for assessing RNA-seq data for genome-wide expression differences", Submitted.
-
(2011)
Submitted
-
-
Cumbie, J.S.1
Kimbrel, J.A.2
Di, Y.3
Schafer, D.W.4
Whilhelm, L.J.5
Fox, S.E.6
Sullivan, C.M.7
Curzon, A.D.8
Carrington, J.C.9
Mockler, T.C.10
Chang, J.H.11
-
4
-
-
43849112975
-
Functional forms for the negative binomial model for count data
-
Greene, W. (2008): "Functional forms for the negative binomial model for count data", Econ Lett, 99, 586-590.
-
(2008)
Econ. Lett.
, vol.99
, pp. 586-590
-
-
Greene, W.1
-
8
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni, J. C., C. E. Mason, S. M. Mane, M. Stephens, and Y. Gilad (2008): "RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays", Genome Res, 18, 1509-1517.
-
(2008)
Genome Res.
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
10
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
DOI 10.1038/nmeth.1226, PII NMETH.1226
-
Mortazavi, A., B. A. Williams, K. McCue, L. Schaeffer, and B. Wold (2008): "Mapping and quantifying mammalian transcriptomes by RNA-Seq", Nat Methods, 5, 621-628. (Pubitemid 351911867)
-
(2008)
Nature Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
11
-
-
45549088326
-
The transcriptional landscape of the yeast genome defined by RNA sequencing
-
DOI 10.1126/science.1158441
-
Nagalakshmi, U., Z. Wang, K. Waern, C. Shou, D. Raha, M. Gerstein, and M. Snyder (2008): "The transcriptional landscape of the yeast genome defined by RNA sequencing", Science, 320, 1344-1349. (Pubitemid 351929471)
-
(2008)
Science
, vol.320
, Issue.5881
, pp. 1344-1349
-
-
Nagalakshmi, U.1
Wang, Z.2
Waern, K.3
Shou, C.4
Raha, D.5
Gerstein, M.6
Snyder, M.7
-
12
-
-
79951480123
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria, URL, ISBN 3-900051-07-0
-
R Development Core Team (2010): R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, URL http://www.R-project.org, ISBN 3-900051-07-0.
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
13
-
-
84972517956
-
The roles of conditioning in inference
-
Reid, N. (1995): "The roles of conditioning in inference", Stat Sci, 10, 138-157.
-
(1995)
Stat Sci.
, vol.10
, pp. 138-157
-
-
Reid, N.1
-
14
-
-
75249087100
-
EdgeR: A Bioconductor package for differential expression analysis of digital gene expression data
-
Robinson, M. D., D. J. McCarthy, and G. K. Smyth (2010): "edgeR: a Bioconductor package for differential expression analysis of digital gene expression data", Bioinformatics, 26, 139-140.
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
15
-
-
77953176036
-
A scaling normalization method for differential expression analysis of RNA-seq data
-
Robinson, M. D. and A. Oshlack (2010): "A scaling normalization method for differential expression analysis of RNA-seq data", Genome Biol, 11, R25.
-
(2010)
Genome Biol.
, vol.11
-
-
Robinson, M.D.1
Oshlack, A.2
-
16
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
DOI 10.1093/bioinformatics/btm453
-
Robinson, M. D. and G. K. Smyth (2007): "Moderated statistical tests for assessing differences in tag abundance", Bioinformatics, 23, 2881-2887. (Pubitemid 350162894)
-
(2007)
Bioinformatics
, vol.23
, Issue.21
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
17
-
-
41149085992
-
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
-
DOI 10.1093/biostatistics/kxm030
-
Robinson, M. D. and G. K. Smyth (2008): "Small-sample estimation of negative binomial dispersion, with applications to SAGE data", Biostatistics, 9, 321-332. (Pubitemid 351438556)
-
(2008)
Biostatistics
, vol.9
, Issue.2
, pp. 321-332
-
-
Robinson, M.D.1
Smyth, G.K.2
-
18
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth, G. K. (2004): "Linear models and empirical bayes methods for assessing differential expression in microarray experiments", Stat Appl Genet Mol Biol, 3, Article3.
-
(2004)
Stat Appl. Genet. Mol. Biol.
, vol.3
-
-
Smyth, G.K.1
-
20
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang, Z., M. Gerstein, and M. Snyder (2009): "RNA-Seq: a revolutionary tool for transcriptomics", Nat Rev Genet, 10, 57-63.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
|