메뉴 건너뛰기




Volumn 153, Issue 3-4, 2011, Pages 218-228

Transcriptional profiling of peripheral lymphoid tissue reveals genes and networks linked to SSBP/1 scrapie pathology in sheep

Author keywords

Gene expression; Lymph node; Prion; Scrapie; Spleen

Indexed keywords

PRION PROTEIN; TRANSCRIPTOME;

EID: 80053131756     PISSN: 03781135     EISSN: 18732542     Source Type: Journal    
DOI: 10.1016/j.vetmic.2011.05.036     Document Type: Article
Times cited : (9)

References (64)
  • 1
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-rime quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., Orntoft T.F. Normalization of real-rime quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004, 64:5245-5250.
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 4
    • 44249120828 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in ileal Peyer's patch of scrapie-infected sheep using RNA arbitrarily primed PCR
    • Austbø L., Kampmann A., Müller-Ladner U., Neumann E., Olsaker I., Skretting G. Identification of differentially expressed genes in ileal Peyer's patch of scrapie-infected sheep using RNA arbitrarily primed PCR. BMC Vet. Res. 2008, 4:12.
    • (2008) BMC Vet. Res. , vol.4 , pp. 12
    • Austbø, L.1    Kampmann, A.2    Müller-Ladner, U.3    Neumann, E.4    Olsaker, I.5    Skretting, G.6
  • 5
    • 0036620682 scopus 로고    scopus 로고
    • Vacuolar lesion profile in sheep scrapie: factors influencing its variation and relationship to disease-specific PrP accumulation
    • Begara-McGorum I., Gonzalez L., Simmons M., Hunter N., Houston F., Jeffrey M. Vacuolar lesion profile in sheep scrapie: factors influencing its variation and relationship to disease-specific PrP accumulation. J. Comp. Pathol. 2002, 127:59-68.
    • (2002) J. Comp. Pathol. , vol.127 , pp. 59-68
    • Begara-McGorum, I.1    Gonzalez, L.2    Simmons, M.3    Hunter, N.4    Houston, F.5    Jeffrey, M.6
  • 6
    • 0029784248 scopus 로고    scopus 로고
    • Evidence for an early inflammatory response in the central nervous system of mice with scrapie
    • Betmouni S., Perry V.H., Gordon J.L. Evidence for an early inflammatory response in the central nervous system of mice with scrapie. Neuroscience 1996, 74:1-5.
    • (1996) Neuroscience , vol.74 , pp. 1-5
    • Betmouni, S.1    Perry, V.H.2    Gordon, J.L.3
  • 7
    • 0036216807 scopus 로고    scopus 로고
    • Transmission of prion disease
    • Blättler T. Transmission of prion disease. APMIS 2002, 110:71-78.
    • (2002) APMIS , vol.110 , pp. 71-78
    • Blättler, T.1
  • 8
    • 7444271572 scopus 로고    scopus 로고
    • Identification of central nervous system genes involved in the host response to the scrapie agent during preclinical and clinical infection
    • Booth S., Bowman C., Baumgartner R., Sorensen G., Robertson C., Coulthart M., Phillipson C., Somorjai R.L. Identification of central nervous system genes involved in the host response to the scrapie agent during preclinical and clinical infection. J. Gen. Virol. 2004, 85:3459-3471.
    • (2004) J. Gen. Virol. , vol.85 , pp. 3459-3471
    • Booth, S.1    Bowman, C.2    Baumgartner, R.3    Sorensen, G.4    Robertson, C.5    Coulthart, M.6    Phillipson, C.7    Somorjai, R.L.8
  • 13
    • 0003035152 scopus 로고    scopus 로고
    • Neuropathology of prion diseases
    • Cold Spring Harbor Press, New York, S. Prusiner (Ed.)
    • DeArmond S., Ironside J. Neuropathology of prion diseases. Prion Biology and Diseases 1999, 585-652. Cold Spring Harbor Press, New York. S. Prusiner (Ed.).
    • (1999) Prion Biology and Diseases , pp. 585-652
    • DeArmond, S.1    Ironside, J.2
  • 17
    • 0035149502 scopus 로고    scopus 로고
    • Partial dissociation of PrP(Sc) deposition and vacuolation in the brains of scrapie and BSE experimentally affected goats
    • Foster J., Goldmann W., Parnham D., Chong A., Hunter N. Partial dissociation of PrP(Sc) deposition and vacuolation in the brains of scrapie and BSE experimentally affected goats. J. Gen. Virol. 2001, 82:267-273.
    • (2001) J. Gen. Virol. , vol.82 , pp. 267-273
    • Foster, J.1    Goldmann, W.2    Parnham, D.3    Chong, A.4    Hunter, N.5
  • 18
    • 42649101642 scopus 로고    scopus 로고
    • Fibrillar prion peptide PrP(106-126) treatment induces Dab1 phosphorylation and impairs APP processing and Abeta production in cortical neurons
    • Gavin R., Ureña J., Rangel A., Pastrana M.A., Requena J.R., Soriano E., Aguzzi A., del Rio J.A. Fibrillar prion peptide PrP(106-126) treatment induces Dab1 phosphorylation and impairs APP processing and Abeta production in cortical neurons. Neurobiol. Dis. 2008, 30:243-254.
    • (2008) Neurobiol. Dis. , vol.30 , pp. 243-254
    • Gavin, R.1    Ureña, J.2    Rangel, A.3    Pastrana, M.A.4    Requena, J.R.5    Soriano, E.6    Aguzzi, A.7    del Rio, J.A.8
  • 20
    • 78649528060 scopus 로고    scopus 로고
    • Gene expression analysis in distinct regions of the central nervous system during the development of SSBP/1 sheep scrapie
    • Gossner A.G., Foster J.D., Fazakerley J.K., Hunter N., Hopkins J. Gene expression analysis in distinct regions of the central nervous system during the development of SSBP/1 sheep scrapie. Vet. Microbiol. 2011, 147:42-48.
    • (2011) Vet. Microbiol. , vol.147 , pp. 42-48
    • Gossner, A.G.1    Foster, J.D.2    Fazakerley, J.K.3    Hunter, N.4    Hopkins, J.5
  • 22
    • 0033833309 scopus 로고    scopus 로고
    • Distribution of prion protein in the ileal Peyer's patch of scrapie-free lambs and lambs naturally and experimentally exposed to the scrapie agent
    • Heggebø R., Press C.M., Gunnes G., Lie K.I., Tranulis M.A., Ulvund M., Groschup M.H., Landsverk T. Distribution of prion protein in the ileal Peyer's patch of scrapie-free lambs and lambs naturally and experimentally exposed to the scrapie agent. J. Gen. Virol. 2000, 81:2327-2337.
    • (2000) J. Gen. Virol. , vol.81 , pp. 2327-2337
    • Heggebø, R.1    Press, C.M.2    Gunnes, G.3    Lie, K.I.4    Tranulis, M.A.5    Ulvund, M.6    Groschup, M.H.7    Landsverk, T.8
  • 24
    • 45449087921 scopus 로고    scopus 로고
    • QBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
    • Hellemans J., Mortier G., De Paepe A., Speleman F., Vandesompele J. qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data. Genome Biol. 2007, 8:R19.
    • (2007) Genome Biol. , vol.8
    • Hellemans, J.1    Mortier, G.2    De Paepe, A.3    Speleman, F.4    Vandesompele, J.5
  • 25
    • 0036246734 scopus 로고    scopus 로고
    • New Zealand sheep with scrapie-susceptible PrP genotypes succumb to experimental challenge with a sheep-passaged scrapie isolate (SSBP/1)
    • Houston E.F., Halliday S.I., Jeffrey M., Goldmann W., Hunter N. New Zealand sheep with scrapie-susceptible PrP genotypes succumb to experimental challenge with a sheep-passaged scrapie isolate (SSBP/1). J. Gen. Virol. 2002, 83:1247-1250.
    • (2002) J. Gen. Virol. , vol.83 , pp. 1247-1250
    • Houston, E.F.1    Halliday, S.I.2    Jeffrey, M.3    Goldmann, W.4    Hunter, N.5
  • 26
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang d.W., Sherman B.T., Lempicki R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4:44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.1    Sherman, B.T.2    Lempicki, R.A.3
  • 27
    • 34547770885 scopus 로고    scopus 로고
    • Down-regulation of SFRP1 as a putative tumor suppressor gene can contribute to human hepatocellular carcinoma
    • Huang J., Zhang Y.L., Teng X.M., Lin Y., Zheng D.L., Yang P.Y., Han Z.G. Down-regulation of SFRP1 as a putative tumor suppressor gene can contribute to human hepatocellular carcinoma. BMC Cancer 2007, 7:126.
    • (2007) BMC Cancer , vol.7 , pp. 126
    • Huang, J.1    Zhang, Y.L.2    Teng, X.M.3    Lin, Y.4    Zheng, D.L.5    Yang, P.Y.6    Han, Z.G.7
  • 29
    • 0035659971 scopus 로고    scopus 로고
    • Differential diagnosis of infections with the bovine spongiform encephalopathy (BSE) and scrapie agents in sheep
    • Jeffrey M., Martin S., Gonzalez L., Ryder S.J., Bellworthy S.J., Jackman R. Differential diagnosis of infections with the bovine spongiform encephalopathy (BSE) and scrapie agents in sheep. J. Comp. Pathol. 2001, 125:271-284.
    • (2001) J. Comp. Pathol. , vol.125 , pp. 271-284
    • Jeffrey, M.1    Martin, S.2    Gonzalez, L.3    Ryder, S.J.4    Bellworthy, S.J.5    Jackman, R.6
  • 30
    • 0033947543 scopus 로고    scopus 로고
    • Sites of prion protein accumulation in scrapie-infected mouse spleen revealed by immuno-electron microscopy [In Process Citation]
    • Jeffrey M., McGovern G., Goodsir C.M., Brown L., Bruce M.E. Sites of prion protein accumulation in scrapie-infected mouse spleen revealed by immuno-electron microscopy [In Process Citation]. J. Pathol. 2000, 191:323-332.
    • (2000) J. Pathol. , vol.191 , pp. 323-332
    • Jeffrey, M.1    McGovern, G.2    Goodsir, C.M.3    Brown, L.4    Bruce, M.E.5
  • 32
    • 0024325787 scopus 로고
    • The genomic identity of different strains of mouse scrapie is expressed in hamsters and preserved on reisolation in mice
    • Kimberlin R.H., Walker C.A., Fraser H. The genomic identity of different strains of mouse scrapie is expressed in hamsters and preserved on reisolation in mice. J. Gen. Virol. 1989, 70:2017-2025.
    • (1989) J. Gen. Virol. , vol.70 , pp. 2017-2025
    • Kimberlin, R.H.1    Walker, C.A.2    Fraser, H.3
  • 34
    • 16544384933 scopus 로고    scopus 로고
    • Regulation of neuroinflammation: the role of CXCL10 in lymphocyte infiltration during autoimmune encephalomyelitis
    • Klein R.S. Regulation of neuroinflammation: the role of CXCL10 in lymphocyte infiltration during autoimmune encephalomyelitis. J. Cell. Biochem. 2004, 92:213-222.
    • (2004) J. Cell. Biochem. , vol.92 , pp. 213-222
    • Klein, R.S.1
  • 36
    • 0346847520 scopus 로고    scopus 로고
    • Prion disease: bridging the spleen-nerve gap
    • Mabbott N.A., Bruce M.E. Prion disease: bridging the spleen-nerve gap. Nat. Med. 2003, 9:1463-1464.
    • (2003) Nat. Med. , vol.9 , pp. 1463-1464
    • Mabbott, N.A.1    Bruce, M.E.2
  • 37
    • 33646000833 scopus 로고    scopus 로고
    • Prions and their lethal journey to the brain
    • Mabbott N.A., MacPherson G.G. Prions and their lethal journey to the brain. Nat. Rev. Microbiol. 2006, 4:201-211.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 201-211
    • Mabbott, N.A.1    MacPherson, G.G.2
  • 39
    • 7444221871 scopus 로고    scopus 로고
    • Abnormal prion protein in genetically resistant sheep from a scrapie-infected flock
    • Madec J.Y., Simon S., Lezmi S., Bencsik A., Grassi J., Baron T. Abnormal prion protein in genetically resistant sheep from a scrapie-infected flock. J. Gen. Virol. 2004, 85:3483-3486.
    • (2004) J. Gen. Virol. , vol.85 , pp. 3483-3486
    • Madec, J.Y.1    Simon, S.2    Lezmi, S.3    Bencsik, A.4    Grassi, J.5    Baron, T.6
  • 40
    • 0028703452 scopus 로고
    • PrP gene dosage determines the timing but not the final intensity or distribution of lesions in scrapie pathology
    • Manson J.C., Clarke A.R., McBride P.A., McConnell I., Hope J. PrP gene dosage determines the timing but not the final intensity or distribution of lesions in scrapie pathology. Neurodegeneration 1994, 3:331-340.
    • (1994) Neurodegeneration , vol.3 , pp. 331-340
    • Manson, J.C.1    Clarke, A.R.2    McBride, P.A.3    McConnell, I.4    Hope, J.5
  • 41
    • 12544257289 scopus 로고    scopus 로고
    • Pathological prion protein exposure switches on neuronal mitogen-activated protein kinase pathway resulting in microglia recruitment
    • Marella M., Gaggioli C., Batoz M., Deckert M., Tartare-Deckert S., Chabry J. Pathological prion protein exposure switches on neuronal mitogen-activated protein kinase pathway resulting in microglia recruitment. J. Biol. Chem. 2005, 280:1529-1534.
    • (2005) J. Biol. Chem. , vol.280 , pp. 1529-1534
    • Marella, M.1    Gaggioli, C.2    Batoz, M.3    Deckert, M.4    Tartare-Deckert, S.5    Chabry, J.6
  • 43
    • 33847062786 scopus 로고    scopus 로고
    • Gene gun-delivered pGM-CSF adjuvant induces enhanced emigration of two dendritic cell subsets from the skin
    • Matthews K., Bailey S.L., Gossner A.G., Watkins C., Dalziel R.G., Hopkins J. Gene gun-delivered pGM-CSF adjuvant induces enhanced emigration of two dendritic cell subsets from the skin. Scand. J. Immunol. 2007, 65:221-229.
    • (2007) Scand. J. Immunol. , vol.65 , pp. 221-229
    • Matthews, K.1    Bailey, S.L.2    Gossner, A.G.3    Watkins, C.4    Dalziel, R.G.5    Hopkins, J.6
  • 44
    • 44949098577 scopus 로고    scopus 로고
    • Scrapie-specific pathology of sheep lymphoid tissues
    • McGovern G., Jeffrey M. Scrapie-specific pathology of sheep lymphoid tissues. PLoS ONE 2007, 2:e1304.
    • (2007) PLoS ONE , vol.2
    • McGovern, G.1    Jeffrey, M.2
  • 45
    • 0035099673 scopus 로고    scopus 로고
    • A novel erythroid-specific marker of transmissible spongiform encephalopathies
    • Miele G., Manson J., Clinton M. A novel erythroid-specific marker of transmissible spongiform encephalopathies. Nat. Med. 2001, 7:361-364.
    • (2001) Nat. Med. , vol.7 , pp. 361-364
    • Miele, G.1    Manson, J.2    Clinton, M.3
  • 46
    • 0027113033 scopus 로고
    • Immunodetection of a disease specific PrP fraction in scrapie-affected sheep and BSE-affected cattle
    • Mohri S., Farquhar C.F., Somerville R.A., Jeffrey M., Foster J., Hope J. Immunodetection of a disease specific PrP fraction in scrapie-affected sheep and BSE-affected cattle. Vet. Rec. 1992, 131:537-539.
    • (1992) Vet. Rec. , vol.131 , pp. 537-539
    • Mohri, S.1    Farquhar, C.F.2    Somerville, R.A.3    Jeffrey, M.4    Foster, J.5    Hope, J.6
  • 47
    • 0034686002 scopus 로고    scopus 로고
    • Impaired prion replication in spleens of mice lacking functional follicular dendritic cells
    • Montrasio F., Frigg R., Glatzel M., Klein M.A., Mackay F., Aguzzi A., Weissmann C. Impaired prion replication in spleens of mice lacking functional follicular dendritic cells. Science 2000, 288:1257-1259.
    • (2000) Science , vol.288 , pp. 1257-1259
    • Montrasio, F.1    Frigg, R.2    Glatzel, M.3    Klein, M.A.4    Mackay, F.5    Aguzzi, A.6    Weissmann, C.7
  • 48
    • 0034655636 scopus 로고    scopus 로고
    • Selenoprotein P: properties functions, and regulation
    • Mostert V. Selenoprotein P: properties functions, and regulation. Arch. Biochem. Biophys. 2000, 376:433-438.
    • (2000) Arch. Biochem. Biophys. , vol.376 , pp. 433-438
    • Mostert, V.1
  • 51
    • 0033779255 scopus 로고    scopus 로고
    • Identification of upregulated genes in scrapie-infected brain tissue
    • Riemer C., Queck I., Simon D., Kurth R., Baier M. Identification of upregulated genes in scrapie-infected brain tissue. J. Virol. 2000, 74:10245-10248.
    • (2000) J. Virol. , vol.74 , pp. 10245-10248
    • Riemer, C.1    Queck, I.2    Simon, D.3    Kurth, R.4    Baier, M.5
  • 52
    • 62449152322 scopus 로고    scopus 로고
    • Accumulation and dissemination of prion protein in experimental sheep scrapie in the natural host
    • Ryder S.J., Dexter G., Heasman L., Warner R., Moore S.J. Accumulation and dissemination of prion protein in experimental sheep scrapie in the natural host. BMC Vet. Res. 2009, 5:9.
    • (2009) BMC Vet. Res. , vol.5 , pp. 9
    • Ryder, S.J.1    Dexter, G.2    Heasman, L.3    Warner, R.4    Moore, S.J.5
  • 54
    • 33745092824 scopus 로고    scopus 로고
    • Gene expression alterations in brains of mice infected with three strains of scrapie
    • Skinner P., Abbassi H., Chesebro B., Race R., Reilly C., Haase A. Gene expression alterations in brains of mice infected with three strains of scrapie. BMC Genomics 2006, 7:114.
    • (2006) BMC Genomics , vol.7 , pp. 114
    • Skinner, P.1    Abbassi, H.2    Chesebro, B.3    Race, R.4    Reilly, C.5    Haase, A.6
  • 55
    • 1542315619 scopus 로고    scopus 로고
    • CDNA representational difference analysis of ileal Peyer's patches in lambs after oral inoculation with scrapie
    • Skretting G., Espenes A., Ulvund M.J., Olsaker I. cDNA representational difference analysis of ileal Peyer's patches in lambs after oral inoculation with scrapie. Biochem. Biophys. Res. Commun. 2004, 316:272-279.
    • (2004) Biochem. Biophys. Res. Commun. , vol.316 , pp. 272-279
    • Skretting, G.1    Espenes, A.2    Ulvund, M.J.3    Olsaker, I.4
  • 56
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • (Article)
    • Smyth G.K. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 2004, 3. (Article).
    • (2004) Stat. Appl. Genet. Mol. Biol. , vol.3
    • Smyth, G.K.1
  • 57
    • 33644872577 scopus 로고    scopus 로고
    • Limma: linear models for microarray data
    • Springer, New York, R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber (Eds.)
    • Smyth G.K. Limma: linear models for microarray data. Bioinformatics and Computational Biology Solutions Using R and Bioconductor 2005, 397-420. Springer, New York. R. Gentleman, V. Carey, S. Dudoit, R. Irizarry, W. Huber (Eds.).
    • (2005) Bioinformatics and Computational Biology Solutions Using R and Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 58
    • 0036219312 scopus 로고    scopus 로고
    • Early and late pathogenesis of natural scrapie infection in sheep
    • Van Keulen L.J., Vromans M.E., van Zijderveld F.G. Early and late pathogenesis of natural scrapie infection in sheep. APMIS 2002, 110:23-32.
    • (2002) APMIS , vol.110 , pp. 23-32
    • Van Keulen, L.J.1    Vromans, M.E.2    van Zijderveld, F.G.3
  • 59
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • research0034.1-research0034.11
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., De Paepe A., Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3. research0034.1-research0034.11.
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 62
    • 34250030069 scopus 로고    scopus 로고
    • Transcriptome analysis reveals altered cholesterol metabolism during the neurodegeneration in mouse scrapie model
    • Xiang W., Hummel M., Mitteregger G., Pace C., Windl O., Mansmann U., Kretzschmar H.A. Transcriptome analysis reveals altered cholesterol metabolism during the neurodegeneration in mouse scrapie model. J. Neurochem. 2007, 102:834-847.
    • (2007) J. Neurochem. , vol.102 , pp. 834-847
    • Xiang, W.1    Hummel, M.2    Mitteregger, G.3    Pace, C.4    Windl, O.5    Mansmann, U.6    Kretzschmar, H.A.7
  • 63
    • 33646560027 scopus 로고    scopus 로고
    • The sheep and cattle Peyer's patch as a site of B-cell development
    • Yasuda M., Jenne C.N., Kennedy L.J., Reynolds J.D. The sheep and cattle Peyer's patch as a site of B-cell development. Vet. Res. 2006, 37:401-415.
    • (2006) Vet. Res. , vol.37 , pp. 401-415
    • Yasuda, M.1    Jenne, C.N.2    Kennedy, L.J.3    Reynolds, J.D.4
  • 64
    • 30044449754 scopus 로고    scopus 로고
    • DJ-1 up-regulates glutathione synthesis during oxidative stress and inhibits A53T alpha-synuclein toxicity
    • Zhou W., Freed C.R. DJ-1 up-regulates glutathione synthesis during oxidative stress and inhibits A53T alpha-synuclein toxicity. J. Biol. Chem. 2005, 280:43150-43158.
    • (2005) J. Biol. Chem. , vol.280 , pp. 43150-43158
    • Zhou, W.1    Freed, C.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.