Gene expression profiling of phytoplasma-infected Madagascar periwinkle leaves using differential display

Molecular Biology Reports

Volumn 38, Issue 5, 2011, Pages 2993-3000

  De Luca, V ^a   Capasso, C ^a   Capasso, A ^a   Pastore, M ^b   Carginale, V ^a  

^a INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^b CRA   (Italy)

Author keywords

Differential display; Host pathogen interactions; Plant pathogens; Stress response

Indexed keywords

COMPLEMENTARY DNA;

2 ISOPROPYLMALATE SYNTHASE GENE; ARTICLE; BACTERIAL PLANT DISEASE; CATHARANTHUS ROSEUS; CONTROLLED STUDY; DIFFERENTIAL DISPLAY; DNA SEQUENCE; DOWN REGULATION; EDD1 GENE; EST 420874 GENE; FIP37 GENE; GENE; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE ISOLATION; GENETIC TRANSCRIPTION; HOST PATHOGEN INTERACTION; JAZ GENE; LEA14 GENE; MITOCHONDRIAL TRANSLOCASE GENE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PHYTOPLASMA; PLANT LEAF; PLANT PATHOGEN INTERACTION; PUTATIVE ALPHA BETA HYDROLASE GENE; PUTATIVE GLYCOSIL HYDROLASE 1 GENE; PUTATIVE GLYCOSIL HYDROLASE 3 GENE; PUTATIVE RETROTRANSPOSON; PVIP GENE; RAS PROTEIN RAB11A GENE; RETROPOSON; RIBOSOMAL L15P GENE; UPREGULATION; WD REPEAT GENE;

ANIMALS; CATHARANTHUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; MICROARRAY ANALYSIS; MOLECULAR SEQUENCE DATA; PHYTOPLASMA; PLANT DISEASES; PLANT LEAVES; SYMBIOSIS;

CANDIDATUS PHYTOPLASMA; CANDIDATUS PHYTOPLASMA PYRI; CATHARANTHUS ROSEUS; HEXAPODA; PROKARYOTA;

EID: 80052515827     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-9964-x     Document Type: Article

References (39)

1. Lee I-M, Davis RE, Gundersen-Rindal DE (2000) Phytoplasma: phytopathogenic mollicutes. Annu Rev Microbiol 54:221-255
2. Christensen NM, Axelsen KB, Nicolaisen M, Schulz A (2005) Phytoplasmas and their interactions with hosts. Trends Plant Sci 10:526-535 (Pubitemid 41566275)
3. Bertaccini A (2007) Phytoplasmas: diversity, taxonomy, and epidemiology. Front Biosci 12:673-689 (Pubitemid 46860208)
4. Hanboonsong Y, Choosai C, Panyim S, Damak S (2002) Transovarial transmission of sugarcane white leaf phytoplasma in the insect vector Matsumuratettix hiroglyphicus (Matsumura). Insect Mol Biol 11:97-103 (Pubitemid 34175799)
5. Hogenhout SA, Oshima K, Ammar E-D, Kakizawa S, Kingdom HN, Namba S (2008) Phytoplasmas: bacteria that manipulate plants and insects. Mol Plant Pathol 9:403-423 (Pubitemid 351832398)
6. Lepka P, Stitt M, Moll E, Seemüller E (1999) Effect of phytoplasmal infection on concentration and translocation of carbohydrates and amino acids in periwinkle and tobacco. Physiol Mol Plant Pathol 55:59-68 (Pubitemid 29355205)
7. Maust BE, Espadas F, Talavera C, Aguilar M, Santamaría JM, Oropeza C (2003) Changes in carbohydrate metabolism in coconut palms infected with the lethal yellowing phytoplasma. Phytopathology 93:976-981 (Pubitemid 36953351)
8. Musetti R, Favali A, Pressacco L (2000) Histopathology and polyphenol content in plants infected by phytoplasmas. Cytobios 102:133-147
9. Jagoueix-Eveillard S, Tarendau F, Guolter K, Danet JL, Bové JM, Garnier M (2001) Catharanthus roseus genes regulated differentially by mollicute infections. Mol Plant Microbe Interact 14:225-233 (Pubitemid 32100284)
10. Garcia-Chapa M, Lavina A, Sanchez I, Medina V, Battle A (2003) Occurrence, symptom expression and characterization of phytoplasma associated with Pear Decline disease in Catalonia (Spain). J Phytopathol 151:584-590 (Pubitemid 39651124)
11. Carginale V, Maria G, Capasso C, Ionata E, La Cara F, Pastore M, Bertaccini A, Capasso A (2004) Identification of genes expressed in response to phytoplasma infection in leaves of Prunus armeniaca by messenger RNA differential display. Gene 332:29-34 (Pubitemid 38624247)
12. Tessitori M, Maria G, Capasso C, Catara G, Rizza S, De Luca V, Catara A, Capasso A, Carginale V (2007) Differential Display analysis of gene expression in Etrog citron leaves infected by Citrus viroid III. Biochim Biophys Acta 1769:228-235 (Pubitemid 46702332)
13. Sambrook J, Russell DW (2001) Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, New York
14. Henrissat B, Coutinho PM, Davies GJ (2001) A census of carbohydrate- active enzymes in the genome of Arabidopsis thaliana. Plant Mol Biol 47:55-72 (Pubitemid 32817808)
15. Minic Z (2008) Physiological roles of plant glycoside hydrolases. Planta 227:723-740
16. Faure D (2002) The family-3 Glycoside Hydrolases: from housekeeping functions to host-microbe interactions. Appl Environ Microbiol 68:1485-1490 (Pubitemid 34279949)
17. Zeng L-R, Vega-Sanchez ME, Zhu T, Wang G-L (2006) Ubiquitination- mediated protein degradation and modification: an emerging theme in plant-microbe interactions. Cell Res 16:413-426 (Pubitemid 43987394)
18. Mazzuccottelli E, Belloni S, Marone D, De Leonardis AM, Guerra D, Di Fonzo N, Cattivelli L, Mastrangelo AM (2006) The E3 ubiquitin ligase gene family in plants: regulation by degradation. Curr Genomics 7:509-522 (Pubitemid 46062382)
19. Molnar G, Bancos S, Nagy F, Szekeres M (2002) Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana. Planta 215:127-133 (Pubitemid 36059241)
20. Takai R, Matsuda N, Nakano A (2002) EL5, a rice N- acetylchitooligosaccharide elicitor-responsive RING-H2 finger protein, is a ubiquitin ligase which functions in vitro in co-operation with an elicitor-responsive ubiquitin-conjugating enzyme, OsUBC5b. Plant J 30:447-455 (Pubitemid 34580744)
21. Serrano M, Guzman P (2004) Isolation and gene expression analysis of Arabidopsis thaliana mutants with constitutive expression of ATL2, an early elicitor-response RING-H2 zincfinger gene. Genetics 167:919-929 (Pubitemid 38931876)
22. Tö r M, Yemm A, Holub E (2003) The role of proteolysis in R gene mediated defence in plants. Mol Plant Pathol 4:287-296 (Pubitemid 36933210)
23. Holmquist M (2000) Alpha/beta-hydrolase fold enzymes: structures, functions and mechanisms. Curr Protein Pept Sci 1:209-235
24. de Kraker J-W, Luck K, Textor S, Tokuisa JG, Gershenzon J (2007) Two Arabidopsis genes (IPMS1 and IPMS2) encode isopropylmalate synthase, the branchpoint step in the biosynthesis of leucine. Plant Physiol 143:970-986 (Pubitemid 46940956)
25. Pasquer F, Ochsner U, Zam J, Keller B (2006) Common and distinct gene expression patterns induced by the herbicides 2, 4- dichlorophenoxyacetic acid, cinidon-ethyl and tribenuron-methyl in wheat. Pest Manag Sci 62:1155-1167 (Pubitemid 44875664)
26. Field B, Furniss C, Wilkinson A, Mithen R (2006) Expression of a Brassica isopropylmalate synthase gene in Arabidopsis perturbs both glucosinolate and amino acid metabolism. Plant Mol Biol 60:717-727 (Pubitemid 43673624)
27. Schindler U, Beckmann H, Cashmore AR (1993) HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region. Plant J 4:137-150
28. Dunoyer P, Thomas C, Harrison S, Reverse F, Maule A (2004) A cysteine-rich plant protein potentiates potyvirus movement through an interaction with the Virus Genome-Linked Protein VPg. J Virol 78:2301-2309 (Pubitemid 38228923)
29. Battaglia M, Olvera-Carrillo Y, Garciarrubio A, Campos F, Covarrubias AA (2008) The enigmatic LEA proteins and other hydrophilins. Plant Physiol 148:6-24 (Pubitemid 352847571)
30. Tunnacliffe A, Wise MJ (2007) The continuing conundrum of the LEA proteins. Naturwissenschaften 94:791-812 (Pubitemid 47367664)
31. Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL (2005) Solution structure of a late embryogenesis abundan protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein. Protein Sci 14:2601-2609 (Pubitemid 41395587)
32. Wiedemann N, Frazier AE, Pfanner N (2004) The protein import machinery of mitochondria. J Biol Chem 279:14473-14476 (Pubitemid 38618831)
33. Hood DA, Joseph A-M (2004) Mitochondrial assembly: protein import. Proc Nutr Soc 63:293-300 (Pubitemid 38787481)
34. Chico JM, Chini A, Fonseca S, Solano R (2008) JAZ repressors set the rhythm in jasmonate signaling. Curr Opin Plant Biol 11:486-494
35. Chini A, Fonseca S, Chico JM, Fernandez-Calvo P, Solano R (2009) The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins. Plant J 59:77-87
36. Abbal P, Pradal M, Muniz L, Sauvage F-X, Chatelet P, Ueda T, Tesniere C (2008) Molecular characterization and expression analysis of the Rab GTPase family in Vitis vinifera reveal the specific expression of a VvRabA protein. J Exp Bot 59:2403-2416
37. Grosshans BL, Ortiz D, Novick P (2006) Rabs and their effectors: achieving specificity in membrane traffic. Proc Natl Acad Sci USA 103:11821-11827 (Pubitemid 44215770)
38. Li D, Roberts R (2001) WD-repeat proteins: structure characteristics, biological function, and their involvement in human diseases. Cell Mol Life Sci 58:2085-2097 (Pubitemid 34016977)
39. Reddy DR, Aspatwar A, Dholakia BB, Gupta VS (2008) Evolutionary analysis of WD40 super family proteins involved in spindle checkpoint and RNA export: molecular evolution of spindle checkpoint. Bioinformation 2:461-468