Differential display analysis of gene expression in Etrog citron leaves infected by Citrus viroid III

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1769, Issue 4, 2007, Pages 228-235

  Tessitori, Matilde ^b   Maria, Giovanna ^a   Capasso, Clemente ^a   Catara, Giuliana ^a   Rizza, Serena ^b   De Luca, Viviana ^a   Catara, Antonino ^b   Capasso, Antonio ^a   Carginale, Vincenzo ^a  

^a INSTITUTE OF PROTEIN BIOCHEMISTRY   (Italy)

^b UNIVERSITY OF CATANIA   (Italy)

Author keywords

Dwarfing; Host pathogen interactions; Plant pathogens; RNA silencing; Stress response

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA; SINGLE STRANDED RNA;

AMINO ACID TRANSPORT; ARTICLE; CELL STRUCTURE; CELL WALL; CHLOROSIS; CITRON; CITRUS VIROID 3; CONTROLLED STUDY; DIFFERENTIAL DISPLAY; GENE EXPRESSION; NONHUMAN; PLANT DEFENSE; PLANT DISEASE; PLANT LEAF; PLANT RESPONSE; PRIORITY JOURNAL; RNA REPLICATION; SIGNAL TRANSDUCTION; STRESS; VIROID; VIROIDAL PLANT DISEASE;

CITRUS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; PLANT DISEASES; PLANT LEAVES; PLANT VIRUSES; RNA, PLANT; SIGNAL TRANSDUCTION; VIROIDS;

CITRUS; CITRUS MEDICA; CITRUS VIROID III; VIROIDS;

EID: 34247891448     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2007.03.004     Document Type: Article

References (45)

1. Gora-Sochacka A. Unusual small pathogenic RNAs. Acta Biochim. Pol. 51 (2004) 587-607
2. Flores R., Hernandez C., Martinez de Alba A.E., Daros J.A., and Di Serio F. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 43 (2005) 117-139
3. Tabler M., and Tsagris M. Viroids: petite RNA pathogens with distinguished talents. Trends Plant Sci. 9 (2004) 339-348
4. Daros J.A., Elena S.F., and Flores R. Viroids: an Ariadne's thread into the RNA labyrinth. EMBO Rep. 7 (2006) 593-598
5. Itaya A., Matsuda Y., Gonzales R.A., Nelson R.S., and Ding B. Potato spindle tuber viroid strains of different pathogenicity induces and suppresses expression of common and unique genes in infected tomato. Mol. Plant-Microb. Interact. 15 (2002) 990-999
6. Gadea J., Mayda M.E., Conejero V., and Vera P. Characterization of defense-related genes ectopically expressed in viroid-infected tomato plants. Mol. Plant-Microb. Interact. 9 (1996) 409-415
7. Duran-Vila N., Roistacher C.N., Rivera-Bustamante R., and Semancik J.S. A definition of citrus viroid groups and their relationship to the exocortis disease. J. Gen. Virol. 69 (1988) 3069-3080
8. Vidalakis G., Davis J.Z., and Semancik J.S. Population diversity between citrus viroid II variants characterized as agents of cachexia disease. Ann. Appl. Biol. 146 (2005) 449-458
9. Roistacher C.N., Bash J.A., and Semancik J.S. Distinct disease symptoms in Poncirus trifoliata induced by three citrus viroids from three specific groups. Proc. 12th Conf. Int. Org. Citrus Virol. (1993), IOCV, Riverside, CA, USA 173-179
10. Vidalakis G., Gumpf D.J., Bash J.A., and Semancik J.S. "Finger Imprint" of Poncirus trifoliata: a specific interaction of a viroid, a host and irrigation. Plant Dis. 88 (2004) 709-713
11. Semancik J.S., Rakowski A.G., Bash J.A., and Gumpf D.J. Application of selected viroids for dwarfing and enhancement of production of "Valencia" orange. J. Hortic. Sci. 72 (1997) 563-570
12. Albanese G., La Rosa R., Tessitori M., Fuggetta E., and Catara A. Long-term effect of CVd-III of plants on citrange, trifoliate and sour orange. Proc. 13th Conf. Int. Org. Citrus Virol. (1996), IOCV, Riverside, CA, USA 367-369
13. Tessitori M., La Rosa R., Di Serio F., Albanese G., and Catara A. Molecular characterization of a Citrus viroid III (CVd-III) associated with citrus dwarfing in Italy. Proc. 15th Conf. Int. Org. Citrus Virol. (2002), IOCV, Riverside, CA, USA 387-389
14. Carginale V., Maria G., Capasso C., Ionata E., La Cara F., Pastore M., Bertaccini A., and Capasso A. Identification of genes expressed in response to phytoplasma infection in leaves of Prunus armeniaca by messenger RNA differential display. Gene 332 (2004) 29-34
15. Rivera-Bustamante R., Gin R., and Semancik J.S. Enhanced resolution of circular and linear molecular forms of viroids and viroid-like RNA by electrophoresis in a discontinuous-pH system. Anal. Biochem. 156 (1986) 91-95
16. Liao V.H., and Freedman J.H. Cadmium-regulated genes from the nematode Caenorhabditis elegans. Identification and cloning of new cadmium-responsive genes by differential display. J. Biol. Chem. 273 (1998) 31962-31970
17. Roberts K., and Shirsat A.H. Increased extensin levels in Arabidopsis affect inflorescence stem thickening and height. J. Exp. Bot. 57 (2006) 537-545
18. Merkouropoulos G., and Shirsat A.H. The unusual Arabidopsis extensin gene atExt1 is expressed throughout plant development and is induced by a variety of biotic and abiotic stresses. Planta 217 (2003) 356-366
19. Carginale V., Scudiero R., Capasso C., Capasso A., Kille P., di Prisco G., and Parisi E. Cadmium-induced differential accumulation of metallothionein isoforms in the Antarctic icefish which exhibits no basal protein but high endogenous mRNA levels. Biochem. J. 332 (1998) 475-481
20. Baker C.J., and Orlandi E.W. Active oxygene species in plant pathogenesis. Annu. Rev. Phytopathol. 33 (1995) 299-321
21. Garabagi F., Duns G., and Strommer J. Selective recruitment of Adh genes for distinct enzymatic functions in Petunia hybrida. Plant Mol. Biol. 58 (2005) 283-294
22. Duan H., Li F., Wu X., Ma D., Wang M., and Hou Y. Cloning and characterization of two EREBP transcription factors from cotton (Gossypium hirsutum L.). Biochemistry (Mosc) 71 (2006) 285-293
23. Anandalakshmi R., Marathe R., Ge X., Herr Jr. J.M., Mau C., Mallory A., Pruss G., Bowman L., and Vance V.B. A calmodulin-related protein that suppresses posttranscriptional gene silencing in plants. Science 290 (2000) 142-144
24. Bass B.L. Double-stranded RNA as a template for gene silencing. Cell 101 (2000) 235-238
25. Wang M.B., Bian X.Y., Wu L.M., Liu L.X., and Smith N.A. On the role of RNA silencing in the pathogenicity and evolution of viroids and viral satellites. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 3275-3280
26. Li W.X., and Ding S.W. Viral suppressors of RNA silencing. Curr. Opin. Biotechnol. 12 (2001) 150-154
27. Benes C.H., Wu N., Elia A.E.H., Dharia T., Cantley L.C., and Soltoff S.P. The C2 domain of PKC delta is a phosphotyrosine binding domain. Cell 121 (2005) 271-280
28. Verhoeyen M.E., Bovy A., Collins G., Muir S., Robinson S., de Vos C.H., and Colliver S. Increasing antioxidant levels in tomatoes through modification of the flavonoid biosynthetic pathway. J. Exp. Bot. 53 (2002) 2099-2106
29. Okochi M., Nomura T., Zako T., Arakawa T., Iizuka R., Ueda H., Funatsu T., Leroux M., and Yohda M. Kinetics and binding sites for interaction of the prefoldin with a group II chaperonin: contiguous non-native substrate and chaperonin binding sites in the archaeal prefoldin. J. Biol. Chem. 279 (2004) 31788-31795
30. Hill J.E., and Hemmingsen S.M. Arabidopsis thaliana type I and II chaperonins. Cell Stress Chaperones 6 (2001) 190-200
31. Ikezawa H. Glycosylphosphatidylinositol (GPI)-anchored proteins. Biol. Pharmacol. Bull. 25 (2002) 409-417
32. Ries G., Heller W., Puchta H., Sandermann H., Seidlitz H.K., and Hohn B. Elevated UV-B radiation reduces genome stability in plants. Nature 406 (2000) 98-101
33. Passardi F., Cosio C., Penel C., and Dunand C. Peroxidases have more functions than a Swiss army knife. Plant Cell Rep. 24 (2005) 255-265
34. Hiraga S., Sasaki K., Ito H., Ohashi Y., and Matsui H. A large family of class III plant peroxidases. Plant Cell Physiol. 42 (2001) 462-468
35. Robson F., Costa M.M., Hepworth S.R., Vizir I., Pineiro M., Reeves P.H., Putterill J., and Coupland G. Functional importance of conserved domains in the flowering-time gene CONSTANS demonstrated by analysis of mutant alleles and transgenic plants. Plant J. 28 (2001) 619-631
36. Griffiths S., Dunford R.P., Coupland G., and Laurie D.A. The evolution of CONSTANS-like gene families in barley, rice and Arabidopsis. Plant Physiol. 131 (2003) 1-13
37. Kreps J.A., Wu Y., Chang H.S., Zhu T., Wang X., and Harper J.F. Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol. 130 (2002) 2129-2141
38. Lang P., Zhang C.K., Ebel R.C., Dane F., and Dozier W.A. Identification of cold acclimated genes in leaves of Citrus unshiu by mRNA differential display. Gene 359 (2005) 111-118
39. Geisler D.A., Johansson F.I., Svensson A.S., and Rasmusson A.G. Antimycin A treatment decreases respiratory internal rotenone-insensitive NADH oxidation capacity in potato leaves. BMC Plant Biol. 4 (2004) 8
40. Kagami T., and Suzuki M. Molecular and functional analysis of a vacuolar Na+/H+ antiporter gene of Rosa hybrida. Genes Genet. Syst. 80 (2005) 121-128
41. Yamaguchi T., Fukada-Tanaka S., Inagaki Y., Saito N., Yonekura-Sakakibara K., Tanaka Y., Kusumi T., and Iida S. Gene encoding the vacuolar Na+/H+ exchanger and flower coloration. Plant Cell Physiol. 42 (2001) 451-461
42. Apse M.P., Sottosanto J.B., and Blumwald E. Vacuolar cation/H+ exchange, ion homeostasis, and leaf development are altered in a T-DNA insertional mutant of AtNHX1, the Arabidopsis vacuolar Na+/H+ antiporter. Plant J. 36 (2003) 229-239
43. Okumoto S., Schmidt R., Tegeder M., Fischer W.N., Rentsch D., Frommer W.B., and Koch W. High affinity amino acid transporters specifically expressed in xylem parenchyma and developing seeds of Arabidopsis. J. Biol. Chem. 277 (2002) 45338-45346
44. Diener T.O. Are viroids escaped introns?. Proc. Natl. Acad. Sci. U. S. A. 78 (1981) 5014-5015
45. Qi Y., and Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. Plant Cell 15 (2003) 1360-1374