Genetic linkage maps of barfin flounder (Verasper moseri) and spotted halibut (Verasper variegatus) based on AFLP and microsatellite markers

Molecular Biology Reports

Volumn 38, Issue 7, 2011, Pages 4749-4764

  Ma, Hongyu ^a   Chen, Songlin ^a   Yang, Jingfeng ^a   Chen, Siqing ^a   Liu, Hanwen ^b  

^a AGRO ENVIRONMENTAL PROTECTION INSTITUTE   (China)

^b SOUTH CHINA SEA FISHERIES RESEARCH INSTITUTE   (China)

Author keywords

AFLP; Genetic linkage map; Microsatellite; Verasper moseri; Verasper variegatus

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANIMAL EXPERIMENT; ANIMAL TISSUE; ARTICLE; BARFIN FLOUNDER; CONTROLLED STUDY; FEMALE; FISH; FLOUNDER; GENE LOCUS; GENE MAPPING; GENE SEGREGATION; GENETIC DISTANCE; GENETIC LINKAGE; GENOME ANALYSIS; GENOME LENGTH; INTERSPECIFIC HYBRID; MALE; MICROSATELLITE MARKER; NONHUMAN; NUCLEOTIDE SEQUENCE; SPOTTED HALIBUT; UNINDEXED SEQUENCE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; ANIMALS; CHROMOSOME MAPPING; CHROMOSOME SEGREGATION; FEMALE; FLATFISHES; FLOUNDER; GENETIC LINKAGE; GENOME; MALE; MICROSATELLITE REPEATS;

VERASPER MOSERI; VERASPER VARIEGATUS;

EID: 80052513731     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0612-2     Document Type: Article

References (69)

1. K Fuji K Kobayashi O Hasegawa MRM Coimbra T Sakamoto N Okamoto 2006 Identification of a single major genetic locus controlling the resistance to lymphocystis disease in Japanese flounder (Paralichthys olivaceus) Aquaculture 254 203 210 10.1016/j.aquaculture.2005.11.024 1:CAS:528:DC%2BD28XktFSksrY%3D
2. A Zhan J Hu X Hu M Hui M Wang W Peng X Huang S Wang W Lu C Sun Z Bao 2009 Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri) Anim Genet 40 821 831 19515089 10.1111/j.1365-2052.2009.01920.x 1:CAS:528: DC%2BD1MXhsFKkt7%2FJ
3. E Dirlewanger E Graiano T Joobeur F Garriga-Caldere P Cosson W Howad P Arus 2004 Comparative mapping and marker-assisted selection in Rosaceae fruit crops Proc Natl Acad Sci USA 101 9891 9896 15159547 10.1073/pnas.0307937101 1:CAS:528:DC%2BD2cXlvVahtbg%3D
4. K Fuji O Hasegawa K Honda K Kumasaka T Sakamoto N Okamoto 2007 Marker-assisted breeding of a lymphocystis disease-resistant Japanese flounder (Paralichthys olivaceus) Aquaculture 272 291 295 10.1016/j.aquaculture.2007.07. 210
5. RLR Campos K Nones MC Leddur ASAMT Moura LFB Pinto M Ambo C Boschiero DC Ruy EE Baron K Ninov CAB Altenhofen RAMS Silva MF Rosario DW Burt LL Coutinho 2009 Quantitative trait loci associated with fatness in a broiler-layer cross Anim Genet 40 729 736 19466938 10.1111/j.1365-2052.2009.01910.x 1:CAS:528:DC%2BD1MXht1Kit7rJ
6. K Naruse S Fukamachi H Mitani M Kondo T Matsuoka S Kondo N Hanamura Y Morita K Hasegawa R Nishigaki A Shimada H Wada T Kusakabe N Suzuki M Kinoshita A Kanamori T Terado H Kimura M Nonaka A Shima 2000 A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution Genetics 154 1773 1784 10747068 1:CAS:528:DC%2BD3cXjtVams70%3D
7. M Solignac F Mougel D Vautrin M Monnerot JM Cornuet 2007 A third-generation microsatellite-based map of the honey bee, Apis mellifera, and its comparison with the sequence-based physical map Genome Biol 8 R66 R79 17459148 10.1186/gb-2007-8-4-r66
8. ZQ Du DC Ciobanu SK Onteru D Gorbach AJ Mileham G Jaramillo MF Rothschild 2010 A gene-based SNP linkage map for Pacific white shrimp, Litopenaeus vannamei Anim Genet 41 3 286 294 19968647 10.1111/j.1365-2052.2009.02002.x 1:CAS:528:DC%2BC3cXotVWhtrg%3D
9. WF Dietrich J Miller R Steen MA Merchant D Damron-Boles Z Husain R Dredge MJ Daly KA Ingalls J Tara CA O'connorevans MM Deangelis M David L Levinsonkruglyak N Goddman NG Copeland NA Jenkins TL Hawkins L Stein DC Page ES Lander 1997 A comprehensive genetic map of the mouse genome Nature 380 149 151 10.1038/380149a0
10. XW Sun LQ Liang 2004 A genetic linkage map of common carp (Cyprinus carpio L.) and mapping of a locus associated with cold tolerance Aquaculture 238 165 172 10.1016/S0044-8486(03)00445-9 1:CAS:528:DC%2BD2cXntVartro%3D
11. L Cheng L Liu X Yu D Wang J Tong 2010 A linkage map of common carp (Cyprinus carpio) based on AFLP and microsatellite markers Anim Genet 41 191 198 19917040 10.1111/j.1365-2052.2009.01985.x 1:CAS:528:DC%2BC3cXkvVCls7Y%3D
12. ZJ Liu A Karsi P Li DF Cao R Dunham 2003 An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family Genetics 165 687 694 14573480 1:CAS:528:DC%2BD3sXpt1Ols70%3D
13. BY Lee WJ Lee T Streelman KL Carleton AE Howe G Hulata A Slettan JE Stern Y Terai TD Kocher 2005 A second-generation genetic linkage map of tilapia (Oreochromis spp.) Genetics 170 237 244 15716505 10.1534/genetics.104.035022 1:CAS:528:DC%2BD2MXlslKkurg%3D
14. CE Rexroad Y Palti SA Gahr RL Vallejo 2008 A second generation genetic map for rainbow trout (Oncorhynchus mykiss) BMC Genet 9 74 87 19019240 10.1186/1471-2156-9-74
15. DP Reid CA Smith M Rommens B Blanchard D Martin-Robichaud M Reith 2007 A genetic linkage map of Atlantic halibut (Hippoglossus hippoglossus L.) Genetics 177 1193 1205 17720928 10.1534/genetics.107.075374 1:CAS:528:DC%2BD2sXhtlyrs7jM
16. C Bouza M Hermida BG Pardo C Fernandez GG Fortes J Castro L Sanchez P Presa M Perez A Sanjuan A Carlos JA Alvarez-Dios S Ezcurra RM Cal F Piferrer P Martinez 2007 A microsatellite genetic map of the turbot (Scophthalmus maximus) Genetics 177 2457 2467 18073440 10.1534/genetics.107.075416 1:CAS:528: DC%2BD1cXhtlCjtr4%3D
17. JH Kang WJ Kim WJ Lee 2008 Genetic linkage map of olive flounder, Paralichthys olivaceus Int J Biol Sci 4 143 149 18497873 1:CAS:528: DC%2BD1cXht1KgsbrL
18. XL Liao HY Ma GB Xu CW Shao YS Tian XS Ji JF Yang SL Chen 2009 Construction of a genetic linkage map and mapping of a female-specific DNA marker in half-smooth tongue sole (Cynoglossus semilaevis) Mar Biotechnol 11 699 709 19214631 10.1007/s10126-009-9184-3 1:CAS:528:DC%2BD1MXhtlygsb%2FN
19. F Perez C Erazo M Zhinaula F Volckaert J Calderon 2004 A sex-specific linkage map of the white shrimp Penaeus (Litopenaeus) vannamei based on AFLP markers Aquaculture 242 105 118 10.1016/j.aquaculture.2004.09.002 1:CAS:528:DC%2BD2cXhtVCksbvJ
20. L Li JH Xiang X Liu Y Zhang B Dong XJ Zhang 2005 Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers Aquaculture 245 63 73 10.1016/j.aquaculture.2004.12.015 1:CAS:528:DC%2BD2MXhtFGitLg%3D
21. M Liao L Zhang G Yang M Zhu D Wang Q Wei G Zou D Chen 2007 Development of silver carp (Hypophthalmichthys molitrix) and bighead carp (Aristichthys nobilis) genetic maps using microsatellite and AFLP markers and a pseudo-testcross strategy Anim Genet 38 364 370 17614988 10.1111/j.1365-2052. 2007.01617.x 1:CAS:528:DC%2BD2sXhtVeiurvJ
22. P Vos R Hogers M Blleeker M Reijans T Lee M Hornes A Frijters J Pot J Peleman M Kuiper M Zabeau 1995 AFLP: a new technique for DNA fingerprinting Nucleic Acids Res 23 4407 4414 7501463 10.1093/nar/23.21.4407 1:CAS:528:DyaK2MXpslensbo%3D
23. HY Ma SL Chen YS Tian XS Ji 2008 Genetic diversity of introduced barfin flounder (Verasper moseri) populations by AFLP analysis J Fish China 32 321 326 in Chinese with English abstract
24. PDVN Sudheer S Mastan H Rahman MP Reddy 2010 Molecular characterization and genetic diversity analysis of Jatropha curcas L. in India using RAPD and AFLP analysis Mol Biol Rep 37 2249 2257 10.1007/s11033-010-0033-2
25. PDVN Sudheer N Pandya MP Reddy T Radhakrishnan 2009 Comparative study of interspecific genetic divergence and phylogenic analysis of genus Jatropha by RAPD and AFLP Mol Biol Rep 36 901 907 10.1007/s11033-008-9261-0
26. PDVN Sudheer S Singh SG Mastan J Patel MP Reddy 2009 Molecular characterization and identification of markers for toxic and non-toxic varieties of Jatropha curcas L. using RAPD, AFLP and SSR markers Mol Biol Rep 36 1357 1364 10.1007/s11033-008-9320-6
27. Shi C, Chaudhary S, Yu K, Park SJ, Navabi A, McClean PE (2010) Identification of candidate genes associated with CBB resistance in common bean HR45 (Phaseolus vulgaris L.) using cDNA-AFLP. Mol Biol Rep (online avialable). doi: 10.1007/s11033-010-0079-1
28. L Miao S Shou J Cai F Jiang Z Zhu H Li 2009 Identification of two AFLP markers linked to bacterial wilt resistance in tomato and conversion to SCAR markers Mol Biol Rep 36 479 486 18157700 10.1007/s11033-007-9204-1 1:CAS:528:DC%2BD1MXhvF2ltbc%3D
29. X Wang S Sato S Tabata S Kawasaki 2008 A high-density linkage map of Lotus japonicas based on AFLP and SSR markers DNA Res 15 323 332 18794159 10.1093/dnares/dsn022 1:CAS:528:DC%2BD1cXhtlyqtrvI
30. Muneer PMA, Gopalakrishnan A, Shivanandan R, Basheer VS, Ponniah AG (2010) Genetic variation and phylogenetic relationship between two species of yellow catfish, Horabagrus brachysoma and H. nigricollaris (Teleostei: Horabagridae) based on RAPD and microsatellite markers. Mol Biol Rep (online available). doi: 10.1007/s11033-010-0352-3
31. Sudheer PDVN, Mastan SG, Rahman H, Prakash CR, Singh S, Reddy MP (2010) Cross species amplification ability of novel microsatellites isolated from Jatropha curcas and genetic relationship with sister taxa. Mol Biol Rep (online available). doi: 10.1007/s11033-010-0241-9
32. R Guyomard S Mauger K Tabet-Canale S Martineau C Genet F Krieg E Quillet 2006 A type I and type II microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) with presumptive coverage of all chromosome arms BMC Genomics 7 302 314 17137492 10.1186/1471-2164-7-302
33. XB Wu YL Hu 2010 Genetic diversity and molecular differentiation of Chinese toad based on microsatellite markers Mol Biol Rep 37 2379 2386 19693692 10.1007/s11033-009-9745-6 1:CAS:528:DC%2BC3cXotVWktbY%3D
34. PMA Muneer A Gopalakrishnan KK Musammilu V Mohindra KK Lal VS Basheer WS Lakra 2009 Genetic variation and population structure of endemic yellow catfish, Horabagrus brachysoma (Bagridae) among three populations of Western Ghat region using RAPD and microsatellite markers Mol Biol Rep 36 1779 1791 18979230 10.1007/s11033-008-9381-6
35. M Sasaki 1997 Barfin flounder fisheries and ecology in Hidaka and Iburi (Pacific Ocean) Hokusuishi Dayori 38 7 12
36. M Aritaki K Ohta Y Hotta M Tanaka 2001 Morphological development and growth of laboratory-reared spotted halibut Verasper variegatus Nippon Suisan Gakk 67 58 66
37. M Ortega-Villaizan Romo M Nakajima N Taniguchi 2003 Isolation and characterization of microsatellite DNA markers in the rare species barfin flounder (Verasper moseri) and its closely related species spotted halibut (V. variegatus) Mol Ecol Notes 3 629 631 10.1046/j.1471-8286.2003.00536.x
38. Lahrech Z, Kishioka C, Morishima K, Mori T, Saito S, Arai K (2007) Genetic verification of induced gynogenesis and microsatellite-centromere mapping in the barfin flounder, Verasper moseri. Aquaculture 272(S1):S115-S124
39. M Sekino K Saitoh M Aritaki 2008 Microsatellite markers for a rare species of right-eye flounder Verasper variegatus (Pleuronectiformes, Pleuronectidae) Conserv Genet 9 761 765 10.1007/s10592-007-9386-z 1:CAS:528:DC%2BD1cXkvV2ks78%3D
40. HY Ma JZ Bi CW Shao Y Chen GD Miao SL Chen 2009 Development of 40 microsatellite markers in spotted halibut (Verasper variegatus) and the cross-species amplification in barfin flounder (Verasper moseri) Anim Genet 40 576 578 19392825 10.1111/j.1365-2052.2009.01869.x 1:CAS:528:DC%2BD1MXhtVaiu7%2FJ
41. HY Ma SL Chen 2009 Isolation and characterization of 31 polymorphic microsatellite markers in barfin flounder (Verasper moseri) and the cross-species amplification in spotted halibut (Verasper variegatus) Conserv Genet 10 1591 1595 10.1007/s10592-008-9801-0 1:CAS:528:DC%2BD1MXht1Gisb7E
42. M Ortega-Villaizan Romo S Suzuki M Nakajima N Taniguchi 2006 Genetic evaluation of interindividual relatedness for broodstock management of the rare species barfin flounder Verasper moseri using microsatellite DNA markers Fish Sci 72 33 39 10.1111/j.1444-2906.2006.01113.x 1:CAS:528:DC%2BD28XitF2qs7w%3D
43. M Ortega-Villaizan Romo S Suzuki M Ikeda M Nakajima N Taniguchi 2005 Monitoring of the genetic variability of the hatchery and recaptured fish in the stock enhancement program of the rare species barfin flounder Verasper moseri Fish Sci 71 1120 1130 10.1111/j.1444-2906.2005.01051.x 1:CAS:528: DC%2BD2MXhtFOrtLnK
44. HY Ma JF Yang PZ Su SL Chen 2009 Genetic analysis of gynogenetic and common populations of Verasper moseri using SSR markers Wuhan Univ J Nat Sci 14 3 267 273 10.1007/s11859-009-0315-5 1:CAS:528:DC%2BD1MXlvVWqsbs%3D
45. XS JI SL Chen JF Yang HY Ma YL Jiang 2010 Artificial gynogenesis and assessment of homozygosity in meiotic gynogens of spotted halibut (Verasper variegatus) Aquacult Int 18 1151 1161 10.1007/s10499-010-9330-y
46. R Goto T Mori K Kawamata T Matsubara S Mizuno S Adachi K Yamauchi 1999 Effects of temperature on gonadal sex determination in barfin flounder Verasper moseri Fish Sci 65 884 887 1:CAS:528:DC%2BD3cXivVyqsg%3D%3D
47. ZX Sha SL Chen YS Tian 2007 Chromosome karyotypic analysis of spotted flounder Verasper variegatus J Fish Sci China 14 478 481 (in Chinese with English abstract)
48. YY Wang XZ Liu YJ Xu YY Wu 2009 Study on the karyotype of Verasper moseri Prog Fish Sci 30 2 8 13 (in Chinese with English abstract)
49. HY Ma SL Chen JF Yang XS Ji SQ Chen YS Tian JZ Bi 2010 Isolation of sex-specific AFLP markers in spotted halibut (Verasper variegatus) Environ Biol Fish 88 9 14 10.1007/s10641-010-9615-z
50. GD Miao CW Shao XL Liao HY Ma YS Tian SL Chen 2009 Development of polymorphic microsatellite markers from barfin flounder (Verasper moseri) and their cross-species amplification Conserv Genet 10 701 703 10.1007/s10592-008- 9619-9 1:CAS:528:DC%2BD1MXlsFWntr8%3D
51. J Coughlan M Stefansson P Galvin E Dillane R Fitzgerald TF Cross 2000 Isolation and characterization of 11 microsatellite loci in Atlantic halibut (Hippoglossus hippoglossus L.) Mol Ecol 9 822 10849301 10.1046/j.1365-294x.2000. 00915-3.x 1:CAS:528:DC%2BD3cXksFSisrc%3D
52. DP Reid S Pongsomboon T Jackson C McGowan C Murphy D Martin-Robichaud M Reith 2005 Microsatellite analysis indicates an absence of population structure among Hippoglossus hippoglossus in the north-west Atlantic J Fish Biol 67 570 576 10.1111/j.0022-1112.2005.00733.x
53. XS Ji SL Chen HY Ma TJ Xu XL Liao YL Jiang 2009 Isolation and characterization of nineteen EST-linked polymorphic microsatellite loci for olive flounder (Paralichthys olivaceus) Aquac Res 40 980 983 10.1111/j.1365-2109.2009.02169.x 1:CAS:528:DC%2BD1MXnslKmsr4%3D
54. ® 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen
55. DD Kosambi 1944 The estimation of map distances from recombination values Ann Eugen 12 172 175 10.1111/j.1469-1809.1943.tb02321.x
56. RE Voorrips 2002 MapChart: software for the graphical presentation of linkage maps and QTL J Hered 93 77 78 12011185 10.1093/jhered/93.1.77 1:CAS:528:DC%2BD38XktlOntrw%3D
57. L Fishman AJ Kelly E Morgan JH Willis 2001 A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions Genetics 159 1701 1716 11779808 1:CAS:528: DC%2BD38XntFKqtg%3D%3D
58. A Chakravarti LK Lasher JE Reefer 1991 A maximum likelihood method for estimating genome length using genetic linkage data Genetics 128 175 182 2060775 1:STN:280:DyaK3M3osFeqtg%3D%3D
59. GG Fortes FN Marzano C Bouza P Martinez P Ajmone-Marsan G Gandolfi 2008 Application of amplified fragment length polymorphism markers to assess molecular polymorphisms in gynogenetic haploid embryos of turbot (Scophthalmus maximus) Aquac Res 39 41 49 10.1111/j.1365-2109.2007.01859.x 1:CAS:528:DC%2BD1cXkvFanu7k%3D
60. D Grattapaglia R Sederoff 1994 Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross mapping strategy and RAPD markers Genetics 137 1121 1137 7982566 1:CAS:528:DyaK2MXmslWltw%3D%3D
61. Q Li L Chen L Kong 2009 A genetic linkage map of the sea cucumber, Apostichopus japonicus (Selenka), based on AFLP and microsatellite markers Anim Genet 40 678 685 19422359 10.1111/j.1365-2052.2009.01900.x 1:CAS:528: DC%2BD1MXht1Kit73F
62. WJ Wang HP Wang H Yao GK Wallat LG Tiu QY Wang 2010 A first genetic linkage map of bluegill sunfish (Lepomis macrochirus) using AFLP markers Aquacult Int 18 825 835 10.1007/s10499-009-9303-1
63. D Lallias AR Beaumont CS Haley P Boudry S Heurtebise S Lapegue 2007 A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers Anim Genet 38 560 568 17931405 10.1111/j.1365-2052.2007.01647.x 1:CAS:528:DC%2BD1cXkvVOjtg%3D%3D
64. S Launey D Hedgecock 2001 High genetic load in the Pacific oyster Crassostrea gigas Genetics 159 255 265 11560902 1:STN:280:DC%2BD3MrhtlSisw%3D%3D
65. X Liu X Liu X Guo Q Gao H Zhao G Zhang 2006 A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino Mar Biotechnol 8 386 397 16779713 10.1007/s10126-005-6133-7
66. TW Lyttle 1991 Segregation distorters Annu Rev Genet 25 511 557 1812815 10.1146/annurev.ge.25.120191.002455 1:CAS:528:DyaK38XitVyltb4%3D
67. L Li X Guo 2004 AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg Mar Biotechnol 6 26 36 14564534 10.1007/s10126-003- 0001-0 1:CAS:528:DC%2BD2cXis1ais7o%3D
68. DA Chistiakov B Hellemans CS Haley AS Law CS Tsigenopoulos G Kotoulas D Bertotto A Libertini FAM Volckaert 2005 A microsatellite linkage map of the European sea bass Dicentrarchus labrax L Genetics 170 1821 1826 15937133 10.1534/genetics.104.039719 1:CAS:528:DC%2BD2MXhtFeis77J
69. Z Zhou Z Bao Y Dong S Wang C He W Liu L Wang F Zhu 2006 AFLP linkage map of sea urchin constructed using an interspecific cross between Strongylocentrotus nudus and S. intermedius Aquaculture 259 56 65 10.1016/j.aquaculture.2006.05.010 1:CAS:528:DC%2BD28XovVWrs7o%3D