Comparative study of interspecific genetic divergence and phylogenic analysis of genus Jatropha by RAPD and AFLP : GGenetic divergence and phylogenic analysis of genus Jatropha

Molecular Biology Reports

Volumn 36, Issue 5, 2009, Pages 901-907

  Sudheer Pamidiamarri, D V N ^a   Pandya, Nirali ^a   Reddy, Muppala P ^a   Radhakrishnan, T ^b  

^a CSIR CENTRAL SALT AND MARINE CHEMICALS RESEARCH INSTITUTE   (India)

^b ICAR DIRECTORATE OF GROUNDNUT RESEARCH   (India)

Author keywords

AFLP (Amplified Fragment Length Polymorphism); Biodiesel; Jatropha; Molecular markers; RAPD (Random Amplified Polymorphic DNA)

Indexed keywords

GENOMIC DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; INTERMETHOD COMPARISON; JATROPHA; NONHUMAN; PHYLOGENY; PLANT GENETICS; RANDOM AMPLIFIED POLYMORPHIC DNA; SPECIES COMPARISON; SPECIES DIFFERENCE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; GENETIC VARIATION; JATROPHA; PHYLOGENY; POLYMORPHISM, GENETIC; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SPECIES SPECIFICITY;

EUPHORBIACEAE; JATROPHA; JATROPHA CURCAS; JATROPHA GLANDULIFERA; JATROPHA INTEGERRIMA; JATROPHA MULTIFIDA; JATROPHA PODAGRICA; JATROPHA TANJORENSIS;

EID: 63949088348     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-008-9261-0     Document Type: Article

References (45)

1. D Fairless 2007 Biofuel: the little shrub that could - maybe Nature 449 652 655
2. K Sunita VK Kochar SP Singh RS Katiyar P Pushpangadan 2005 Differential rooting and sprouting behaviour of two Jatropha species and associated physiological and biochemical changes Curr Sci 89 936 939
3. OA Olapeju A Kayode E Olusegun BG James 2007 Antibacterial diterpenoids from Jatropha podagrica Hook Phytochemistry 68 2420 2425
4. AJ Prabakaran M Sujatha 1999 Jatropha tanjorensis Ellis & Saroja, a natural interspecific hybrid occurring in Tamil Nadu, India Gene Res Crop Evol 46 213 218
5. L Yotam S Yaniv B Haim S Menachem H Emile 2000 Rare Jatropha multifida intoxication in two children J Emerg Med 19 173 175
6. O Taofeeq OA Ganiyu AO Tesleem OA Godwin AO Mutiyat 2005 Mechanism of action of Jatropha gossypifolia stem latex as a haemostatic agent Eur J Gen Med 2 4 140 143
7. M Ramchandani CI Jolly 1988 Pharmacognostical and phytochemical studies on Phyllanthus fraternus webster and Jatropha glandulifera ROXB Indian J Pharm Sci 50 276 277
8. R Banerji AR Chowdhury G Misra G Sudarsanam SC Verma GS Srivastava 1985 J. curcas seed oil for energy Biomass 8 277 282
9. GM Gubitz M Mittelbach M Trabi 1999 Exploitation of the tropical oil seed plant Jatropha curcas L Bioresour Technol 67 73 82
10. S Mandpe S Kadlaskar W Degen S Keppeler 2005 On road testing of advanced common Rail diesel vehicles with biodiesel from the Jatropha Curcas plant, Society of Automotive Engineers Inc 26 356 364
11. G Martin A Mayeux 1984 Réflexions sur les cultures oléagineuses énergétiques. II. - Le Pourghère (Jatropha curcas L.): UN carburant possible Oléagineux 39 283 287
12. R Staubmann I Ncube GM Gubitz W Steiner JS Read 1999 Esterase and lipase activity in Jatropha curcas L J Biotechnol 75 117 126
13. Y Takeda 1982 Development study on Jatropha curcas (Sabudum) oil as a substitute for diesel engine oil in Thailand J Agric Assoc China 120 1 8
14. HS Ginwal PS Rawat RL Srivastava 2004 Seed source variation in growth performance and oil yield of Jatropha curcas Linn. in central India Silve Senetica 53 186 192
15. JJ Doyle JL Doyle 1990 Isolation of fresh DNA from fresh tissue Focus 12 3 15
16. JG Williams AR Kubelik J Livak J Rafalski SV Tingey 1990 DNA polymorphism amplified by arbitrary primers are useful as genetic markers Nucleic Acids Res 18 6531 6535
17. P Vos R Hogers M Bleeker M Reijans TV de Lee M Hornes A Frijters J Pot J Peleman M Kuiper M Zabeau 1995 AFLP: a new technique for DNA fingerprinting Nucleic Acids Res 23 4407 4414
18. P Jaccard 1908 Nouvelles recherchesur la distribution florale Bull Soc Vaud Sci Natl 44 223 270
19. J Felsenstein 1985 Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 783 791
20. J Francisco-Ortega DJ Crawford A Santos-Guerra JA Cravalho 1996 Isozyme differentiation in the endemic genus Argyranthemum (Asteraceae, Anthemideae) in the Macaronesian islands Plant Syst Evol 202 137 152
21. Hamrick JL, Godt MJW (1989) Allozyme diversity in plant species. In Brown HD et al (eds) Plant population genetics, breeding and genetic resources. Sinaue Sunderland, MA, USA, pp 43-63
22. DJ Crawford DW Haines MB Cosmer D Wiens P Lopez 1994 Lactoris fernandeziana on the Juan Fernandez Islands allozyme uniformity and field obsevarvations Conserv Biol 8 277 280
23. EJ Essilman DJ Crawford S Brauner TF Stuessy GJ Anderson OM Silva 1997 RAPD marker diversity within and divergence among species of Dendroseris (Asteraceae: Lactuceae) Am J Bot 4 591 596
24. J Francisco-Ortega DJ Crawford A Santos-Guerra JA Cravalho 1996 Isozyme differentiation in the endemic genus Argyranthemum (Asteraceae, Anthemideae) in the Macaronesian islands Plant Syst Evol 202 137 152
25. P Lesica RF Leary FR Allendort DE Bilderbecl 1998 Lac of genetic diversity within and among populations of an endangered plant, Hawellia aquatilis Conserv Biol 2 275 282
26. TK Lowrey DJ Crawroford 1985 Allozyme divergence and evolution in Tertamolopium (Compositae; Astereae) on the Hawaiian Island Syst Bot 10 64 72
27. PS Soltis DE Soltis TL Tucker FA Lang 1992 Allozyme variability is absent in the narrow endemic Bensoniella oregona (Saifragacear) Conserv Biol 6 131 134
28. RP Adams T Demeke 1993 Systematic relationships in Juniperus based on random amplified polymorphic DNAs (RAPDs) Taxon 42 553 571
29. LP Campos JV Raelson WF Grant 1994 Genome relation ships among lotus species based on random amplified polymorphic DNA (RADP) Theor Appl Genet 88 417 422
30. P Catalan Y Shi L Armstrong J Draper CA Stace 1995 Molecular phylogeny of the grass genus Brachypodium P. beauv. based on RFLP and RAPD analysis Bot J Linn Soc 117 263 280
31. EJ Essilman DJ Crawford S Brauner TF Stuessy GJ Anderson OM Silva 1997 RAPD marker diversity within and divergence among species of Dendroseris (Asteraceae: Lactuceae) Am J Bot 4 591 596
32. SA Ranade A Kumar M Goswami N Farooqui V Sane 1997 Genome analysis of Amaranths: determination of inter and intra-species variations J Biosci 22 457 464
33. DM Spooner L Ugarte PW Scroch 1997 Species boundaries and interrelationships of two closely related sympatric diploid wild potato species, Solanum astleyl and Solanum bollviense, based on RAPDs Theor Appl Genet 96 764 771
34. G Brucci P Menozzi 1993 Segregation analysis of random amplified polymorphic DNA (RAPD) markers in Picea abies Karst Mol Ecol 2 227 232
35. MS Brunell R Whitkus 1997 RAPD marker veration in Eriastrum densifolium (polemoniaceae), implications for sub specific delimitation and conservation Syst Bot 22 543 553
36. S Volis B Yakubov I Shulagina D Ward V Zur S Mendlinger 2001 Tests for adaptive RAPD variation in population genetic structure of wild barley, Hordeum spontaneum Koch Biol J Linn Soc 74 289 303
37. MS Brunell R Whitkus 1997 RAPD marker veration in Eriastrum densifolium (Polemoniaceae), implications for sub specific delimitation and conservation Syst Bot 22 543 553
38. H Hadrys M Balick B Schierwater 1992 Applications of random amplified polymorphic DNA(RAPD) in molecular ecology Mol Ecol 1 55 263
39. SD Basha M Sujatha 2007 Inter and intra-population variability of Jatropha curcas (L.) characterized by RAPD and ISSR markers and development of population-specific SCAR markers Euphytica 156 375 386
40. RS Ganesh KT Parthiban KR Senthil V Thiruvengadam M Paramathma 2008 Genetic diversity among Jatropha species as reveled by RAPD markers Genet Resour Crop Evol 10.1007/s10722-007-9285-7
41. M Sujatha AJ Prabakaran 2003 New ornamental Jatropha hybrids through interspecific hybridization Genet Resour Crop Evol 50 75 82
42. M Sujatha HPS Makkar K Becker 2005 Shoot bud proliferation from axillary nodes and leaf sections of non-toxic Jatropha curcas L Plant Growth Regul 47 83 90
43. P Soontornchinaksang T Jenjittikul 2003 Karyology of Jatropha (Euphorbiaceae) Thai For Bull (Bot) 31 105 112
44. EA Rupert B Dehgan GL Webster 1970 Experimental studies of relationships in the genus Jatropha. I. J. curcas X J. integerrima Bull Torrey Bot Club 99 321 325
45. JD Bussel W Michelle AC Jennifer 2005 Arbitrarily amplified DNA markers as characters for phylogenetic inference Perspect Plant Ecol Evol Syst 7 3 26