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Volumn 40, Issue 6, 2009, Pages 821-831

Construction of microsatellite-based linkage maps and identification of size-related quantitative trait loci for Zhikong scallop (Chlamys farreri)

Author keywords

Chlamys farreri; Linkage map; Microsatellite; Quantitative trait locus; Size related trait; Zhikong scallop

Indexed keywords

MICROSATELLITE DNA;

EID: 70449435662     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2009.01920.x     Document Type: Article
Times cited : (67)

References (53)
  • 1
    • 33751227801 scopus 로고    scopus 로고
    • A microsatellite linkage map of the blacklip abalone, Haliotis rubra
    • Baranski M., Loughnan S., Austin C.M. Robinson N. (2006) A microsatellite linkage map of the blacklip abalone, Haliotis rubra. Animal Genetics 37, 563 570.
    • (2006) Animal Genetics , vol.37 , pp. 563-570
    • Baranski, M.1    Loughnan, S.2    Austin, C.M.3    Robinson, N.4
  • 2
    • 0025872337 scopus 로고
    • A maximum likelihood method for estimating genome length using genetic linkage data
    • Chakravarti A., Lasher L.K. Reefer J.E. (1991) A maximum likelihood method for estimating genome length using genetic linkage data. Genetics 128, 175 182.
    • (1991) Genetics , vol.128 , pp. 175-182
    • Chakravarti, A.1    Lasher, L.K.2    Reefer, J.E.3
  • 3
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait loci mapping
    • Churchill G.A. Doerge R.W. (1994) Empirical threshold values for quantitative trait loci mapping. Genetics 138, 963 971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 6
    • 57149125004 scopus 로고    scopus 로고
    • Heritability of shell pigmentation in the Pacific oyster, Crassostrea gigas
    • Evans S., Camara M.D. Langdon C.J. (2009) Heritability of shell pigmentation in the Pacific oyster, Crassostrea gigas. Aquaculture 286, 211 216.
    • (2009) Aquaculture , vol.286 , pp. 211-216
    • Evans, S.1    Camara, M.D.2    Langdon, C.J.3
  • 7
    • 0035694732 scopus 로고    scopus 로고
    • A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions
    • Fishman L., Kelly A.J., Morgan E. Willis J.H. (2001) A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159, 1701 1716.
    • (2001) Genetics , vol.159 , pp. 1701-1716
    • Fishman, L.1    Kelly, A.J.2    Morgan, E.3    Willis, J.H.4
  • 8
    • 33646188556 scopus 로고    scopus 로고
    • A linkage map for Brown Trout (Salmo trutta): Chromosome homeologies and comparative genome organization with other salmonid fish
    • Gharbi K., Gautier A., Danzmann R.G. et al. (2006) A linkage map for Brown Trout (Salmo trutta): chromosome homeologies and comparative genome organization with other salmonid fish. Genetics 172, 2405 2419.
    • (2006) Genetics , vol.172 , pp. 2405-2419
    • Gharbi, K.1    Gautier, A.2    Danzmann, R.G.3
  • 10
    • 4644315697 scopus 로고    scopus 로고
    • Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster Crassostrea gigas
    • Hedgecock D., Li G., Hubert S., Bucklin K. Ribes V. (2004) Widespread null alleles and poor cross-species amplification of microsatellite DNA loci cloned from the Pacific oyster Crassostrea gigas. Journal of Shellfish Research 23, 379 385.
    • (2004) Journal of Shellfish Research , vol.23 , pp. 379-385
    • Hedgecock, D.1    Li, G.2    Hubert, S.3    Bucklin, K.4    Ribes, V.5
  • 11
    • 33748650296 scopus 로고    scopus 로고
    • Chromosomal localization of the major ribosomal RNA genes in scallop Chlamys farreri
    • Huang X., Bao Z., Bi K., Hu J., Zhang C., Zhang Q. Hu X. (2006) Chromosomal localization of the major ribosomal RNA genes in scallop Chlamys farreri. Acta Oceanologica Sinica 25, 108 115.
    • (2006) Acta Oceanologica Sinica , vol.25 , pp. 108-115
    • Huang, X.1    Bao, Z.2    Bi, K.3    Hu, J.4    Zhang, C.5    Zhang, Q.6    Hu, X.7
  • 12
    • 4344664172 scopus 로고    scopus 로고
    • Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas
    • Hubert S. Hedgecock D. (2004) Linkage maps of microsatellite DNA markers for the Pacific oyster Crassostrea gigas. Genetics 168, 351 362.
    • (2004) Genetics , vol.168 , pp. 351-362
    • Hubert, S.1    Hedgecock, D.2
  • 13
    • 0031936380 scopus 로고    scopus 로고
    • Selfish genetic elements and speciation
    • Hurst G.D.D. Schilthuizen M. (1998) Selfish genetic elements and speciation. Heredity 80, 2 8.
    • (1998) Heredity , vol.80 , pp. 2-8
    • Hurst, G.D.D.1    Schilthuizen, M.2
  • 14
    • 0029843418 scopus 로고    scopus 로고
    • Methods for multiplemarker mapping of quantitative trait loci in half-sib populations
    • Knott S.A., Elsen J.-M. Haley C.S. (1996) Methods for multiplemarker mapping of quantitative trait loci in half-sib populations. Theoretical and Applied Genetics 93, 71 80.
    • (1996) Theoretical and Applied Genetics , vol.93 , pp. 71-80
    • Knott, S.A.1    Elsen, J.-M.2    Haley, C.S.3
  • 15
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi D.D. (1944) The estimation of map distances from recombination values. Annals of Eugenics 12, 172 175.
    • (1944) Annals of Eugenics , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 16
    • 36749007258 scopus 로고    scopus 로고
    • A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers
    • Lallias D., Beaumont A.R., Haley C.S., Boudry P., Heurtebise S. Lapègue S. (2007a) A first-generation genetic linkage map of the European flat oyster Ostrea edulis (L.) based on AFLP and microsatellite markers. Animal Genetics 38, 560 568.
    • (2007) Animal Genetics , vol.38 , pp. 560-568
    • Lallias, D.1    Beaumont, A.R.2    Haley, C.S.3    Boudry, P.4    Heurtebise, S.5    Lapègue, S.6
  • 18
    • 0034815730 scopus 로고    scopus 로고
    • High genetic load in the Pacific oyster Crassostrea gigas
    • Launey S. Hedgecock D. (2001) High genetic load in the Pacific oyster Crassostrea gigas. Genetics 159, 255 265.
    • (2001) Genetics , vol.159 , pp. 255-265
    • Launey, S.1    Hedgecock, D.2
  • 20
    • 1642264030 scopus 로고    scopus 로고
    • AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg
    • Li L. Guo X.M. (2004) AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Marine Biotechnology 6, 26 36.
    • (2004) Marine Biotechnology , vol.6 , pp. 26-36
    • Li, L.1    Guo, X.M.2
  • 21
    • 13444269585 scopus 로고    scopus 로고
    • Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers
    • Li L., Xiang J., Liu X., Zhang Y., Dong B. Zhang X. (2005) Construction of AFLP-based genetic linkage map for Zhikong scallop, Chlamys farreri Jones et Preston and mapping of sex-linked markers. Aquaculture 245, 63 73.
    • (2005) Aquaculture , vol.245 , pp. 63-73
    • Li, L.1    Xiang, J.2    Liu, X.3    Zhang, Y.4    Dong, B.5    Zhang, X.6
  • 22
    • 33747114668 scopus 로고    scopus 로고
    • A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino
    • Liu X., Liu X., Guo X., Gao Q., Zhao H. Zhang G. (2006) A preliminary genetic linkage map of the Pacific abalone Haliotis discus hannai Ino. Marine Biotechnology 8, 386 397.
    • (2006) Marine Biotechnology , vol.8 , pp. 386-397
    • Liu, X.1    Liu, X.2    Guo, X.3    Gao, Q.4    Zhao, H.5    Zhang, G.6
  • 23
    • 34249803553 scopus 로고    scopus 로고
    • Identification of quantitative trait loci for growth-related traits in the Pacific abalone Haliotis discus hannai Ino
    • DOI 10.1111/j.1365-2109.2006.01647.x
    • Liu X., Liu X. Zhang G. (2007) Identification of quantitative trait loci for growth-related traits in the Pacific abalone Haliotis discus hannai Ino. Aquaculture Research 38, 789 797. (Pubitemid 46850097)
    • (2007) Aquaculture Research , vol.38 , Issue.8 , pp. 789-797
    • Liu, X.1    Liu, X.2    Zhang, G.3
  • 24
    • 0031833578 scopus 로고    scopus 로고
    • Quantitative Trait Locus (QTL) Mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects
    • Melchinger A.E., Utz H.F. Schon C.C. (1998) Quantitative Trait Locus (QTL) Mapping using different testers and independent population samples in maize reveals low power of QTL detection and large bias in estimates of QTL effects. Genetics 149, 383 403.
    • (1998) Genetics , vol.149 , pp. 383-403
    • Melchinger, A.E.1    Utz, H.F.2    Schon, C.C.3
  • 25
    • 0000313239 scopus 로고
    • Shell color and pattern variation in Mytilus edulis and its adaptive significance
    • Mitton J.B. (1977) Shell color and pattern variation in Mytilus edulis and its adaptive significance. Chesapeake Science 18, 387 390.
    • (1977) Chesapeake Science , vol.18 , pp. 387-390
    • Mitton, J.B.1
  • 26
    • 0002765153 scopus 로고
    • Genetics of shell color in Mytilus edulis L. and the association of growth rate with shell color
    • Newkirk G.F. (1980) Genetics of shell color in Mytilus edulis L. and the association of growth rate with shell color. Journal of Experimental Marine Biology and Ecology 47, 89 94.
    • (1980) Journal of Experimental Marine Biology and Ecology , vol.47 , pp. 89-94
    • Newkirk, G.F.1
  • 27
    • 0035021901 scopus 로고    scopus 로고
    • Nonrandom segregation during meiosis: The unfairness of females
    • Pardo-Manuel de Villena F. Sapienza C. (1998) Nonrandom segregation during meiosis: the unfairness of females. Mammal Genome 12, 331 339.
    • (1998) Mammal Genome , vol.12 , pp. 331-339
    • Pardo-Manuel De Villena, F.1    Sapienza, C.2
  • 28
    • 11144354378 scopus 로고    scopus 로고
    • A new cacao linkage map based on codominant markers: Development and integration of 201 new microsatellite markers
    • Pugh T., Fouet O., Risterucci A.M. et al. (2004) A new cacao linkage map based on codominant markers: development and integration of 201 new microsatellite markers. Theoretical and Applied Genetics 108, 1151 1161.
    • (2004) Theoretical and Applied Genetics , vol.108 , pp. 1151-1161
    • Pugh, T.1    Fouet, O.2    Risterucci, A.M.3
  • 29
    • 35848944129 scopus 로고    scopus 로고
    • Genetic mapping of size-related quantitative trait loci (QTL) in the bay scallop (Argopecten irradians) using AFLP and microsatellite markers
    • Qin Y., Liu X., Zhang H., Zhang G. Guo X. (2007a) Genetic mapping of size-related quantitative trait loci (QTL) in the bay scallop (Argopecten irradians) using AFLP and microsatellite markers. Aquaculture 272, 281 290.
    • (2007) Aquaculture , vol.272 , pp. 281-290
    • Qin, Y.1    Liu, X.2    Zhang, H.3    Zhang, G.4    Guo, X.5
  • 30
    • 33847394478 scopus 로고    scopus 로고
    • Identification and mapping of amplified fragment length polymorphism markers linked to shell color in Bay scallop, Argopecten irradians irradians (Lamarck, 1819)
    • Qin Y., Liu X., Zhang H., Zhang G. Guo X. (2007b) Identification and mapping of amplified fragment length polymorphism markers linked to shell color in Bay scallop, Argopecten irradians irradians (Lamarck, 1819). Marine Biotechnology 9, 66 73.
    • (2007) Marine Biotechnology , vol.9 , pp. 66-73
    • Qin, Y.1    Liu, X.2    Zhang, H.3    Zhang, G.4    Guo, X.5
  • 31
    • 0000625869 scopus 로고
    • Analyzing tables of statistical test
    • Rice R.W. (1989) Analyzing tables of statistical test. Evolution 43, 223 225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, R.W.1
  • 33
    • 36749035283 scopus 로고    scopus 로고
    • Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas
    • Sauvage C., Bierne N., Lapègue S. Boudry P. (2007) Single Nucleotide polymorphisms and their relationship to codon usage bias in the Pacific oyster Crassostrea gigas. Gene 406, 13 22.
    • (2007) Gene , vol.406 , pp. 13-22
    • Sauvage, C.1    Bierne, N.2    Lapègue, S.3    Boudry, P.4
  • 34
    • 0036184839 scopus 로고    scopus 로고
    • QTL Express: Mapping quantitative trait loci in simple and complex pedigrees
    • Seaton G., Haley C.S., Knott S.A., Kearsey M. Visscher P.M. (2002) QTL Express: mapping quantitative trait loci in simple and complex pedigrees. Bioinformatics 18, 339 340.
    • (2002) Bioinformatics , vol.18 , pp. 339-340
    • Seaton, G.1    Haley, C.S.2    Knott, S.A.3    Kearsey, M.4    Visscher, P.M.5
  • 35
    • 34247844464 scopus 로고    scopus 로고
    • Linkage maps for the Pacific abalone (Genus Haliotis) based on microsatellite DNA markers
    • Sekino M. Hara M. (2007) Linkage maps for the Pacific abalone (Genus Haliotis) based on microsatellite DNA markers. Genetics 175, 945 958.
    • (2007) Genetics , vol.175 , pp. 945-958
    • Sekino, M.1    Hara, M.2
  • 36
    • 7344254829 scopus 로고
    • Construction of integrated genetic linkage maps by means of a new computer package: Join map
    • Stam P. (1993) Construction of integrated genetic linkage maps by means of a new computer package: join map. The Plant Journal 3, 739 744.
    • (1993) The Plant Journal , vol.3 , pp. 739-744
    • Stam, P.1
  • 39
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTL
    • Voorrips R.E. (2002) MapChart: software for the graphical presentation of linkage maps and QTL. Journal of Heredity 93, 77 8.
    • (2002) Journal of Heredity , vol.93 , pp. 77-8
    • Voorrips, R.E.1
  • 40
    • 0011674373 scopus 로고
    • A study on the biology of the west Indian beach clam Donax denticulatis. II. Life History
    • Wade B.A. (1968) A study on the biology of the west Indian beach clam Donax denticulatis. II. Life History. Bulletin of Marine Science 18, 876 901.
    • (1968) Bulletin of Marine Science , vol.18 , pp. 876-901
    • Wade, B.A.1
  • 42
    • 19044365792 scopus 로고    scopus 로고
    • A preliminary genetic map of Zhikong scallop (Chlamys farreri Jones et Preston 1904)
    • Wang L., Song L., Chang Y., Xu W., Ni D. Guo X. (2005) A preliminary genetic map of Zhikong scallop (Chlamys farreri Jones et Preston 1904). Aquaculture Research 36, 643 653.
    • (2005) Aquaculture Research , vol.36 , pp. 643-653
    • Wang, L.1    Song, L.2    Chang, Y.3    Xu, W.4    Ni, D.5    Guo, X.6
  • 43
    • 33847745729 scopus 로고    scopus 로고
    • Genetic linkage map of bay scallop, Argopecten irradians irradians (Lamarck 1819)
    • Wang L., Song L., Zhang H., Gao Q. Guo X. (2007) Genetic linkage map of bay scallop, Argopecten irradians irradians (Lamarck 1819). Aquaculture Research 38, 409 419.
    • (2007) Aquaculture Research , vol.38 , pp. 409-419
    • Wang, L.1    Song, L.2    Zhang, H.3    Gao, Q.4    Guo, X.5
  • 44
    • 0006173948 scopus 로고
    • Comparative study of growth and survival of two colour morphs of the Chilean scallop Argopecten purpuratus Lamarck (1819) in suspended culture
    • Wolff M. Garrido J. (1991) Comparative study of growth and survival of two colour morphs of the Chilean scallop Argopecten purpuratus Lamarck (1819) in suspended culture. Journal of Shellfish Research 1, 47 53.
    • (1991) Journal of Shellfish Research , vol.1 , pp. 47-53
    • Wolff, M.1    Garrido, J.2
  • 45
    • 0038718474 scopus 로고    scopus 로고
    • Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin
    • Yu Z. Guo X. (2003) Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. The Biological Bulletin 204, 327 338.
    • (2003) The Biological Bulletin , vol.204 , pp. 327-338
    • Yu, Z.1    Guo, X.2
  • 46
    • 33646142285 scopus 로고    scopus 로고
    • Identification and mapping of disease-resistance QTL in the eastern oyster, Crassostrea virginica Gmelin
    • Yu Z. Guo X. (2006) Identification and mapping of disease-resistance QTL in the eastern oyster, Crassostrea virginica Gmelin. Aquaculture 254, 160 170.
    • (2006) Aquaculture , vol.254 , pp. 160-170
    • Yu, Z.1    Guo, X.2
  • 48
    • 31144476716 scopus 로고    scopus 로고
    • Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags
    • Zhan A., Bao Z., Wang X. Hu J. (2005) Microsatellite markers derived from bay scallop Argopecten irradians expressed sequence tags. Fisheries Science 71, 1341 1346.
    • (2005) Fisheries Science , vol.71 , pp. 1341-1346
    • Zhan, A.1    Bao, Z.2    Wang, X.3    Hu, J.4
  • 49
    • 33644871306 scopus 로고    scopus 로고
    • Polymorphic microsatellite markers in the Zhikong scallop Chlamys farreri
    • DOI 10.1111/j.1471-8286.2005.01162.x
    • Zhan A., Bao Z., Yao B., Wang X., Hui M. Hu J. (2006) Polymorphic microsatellite markers in the Zhikong scallop Chlamys farreri. Molecular Ecology Notes 6, 127 129. (Pubitemid 43373777)
    • (2006) Molecular Ecology Notes , vol.6 , Issue.1 , pp. 127-129
    • Zhan, A.1    Bao, Z.2    Yao, B.3    Wang, X.4    Hui, M.5    Hu, J.6
  • 50
    • 34547135716 scopus 로고    scopus 로고
    • Isolation and characterization of 150 novel microsatellite markers for Zhikong scallop (Chlamys farreri)
    • Zhan A., Bao Z., Hu X., Hui M., Wang M., Peng W., Zhao H. Hu J. (2007a) Isolation and characterization of 150 novel microsatellite markers for Zhikong scallop (Chlamys farreri). Molecular Ecology Notes 7, 1015 1022.
    • (2007) Molecular Ecology Notes , vol.7 , pp. 1015-1022
    • Zhan, A.1    Bao, Z.2    Hu, X.3    Hui, M.4    Wang, M.5    Peng, W.6    Zhao, H.7    Hu, J.8
  • 51
    • 34548863355 scopus 로고    scopus 로고
    • Inheritance pattern of EST-SSRs in self-fertilized larvae of the bay scallop Argopecten irradians
    • Zhan A., Bao Z., Hui M., Wang M., Zhao H., Lu W., Hu X. Hu J. (2007b) Inheritance pattern of EST-SSRs in self-fertilized larvae of the bay scallop Argopecten irradians. Annales Zoologici Fennici 44, 259 268.
    • (2007) Annales Zoologici Fennici , vol.44 , pp. 259-268
    • Zhan, A.1    Bao, Z.2    Hui, M.3    Wang, M.4    Zhao, H.5    Lu, W.6    Hu, X.7    Hu, J.8
  • 52
    • 44849136155 scopus 로고    scopus 로고
    • Characterization of 95 novel microsatellite markers for Zhikong scallop Chlamys farreri using FIASCO-colony hybridization and EST database mining
    • Zhan A., Bao Z., Hu X., Wang S., Peng W., Wang M., Hu J., Liang C. Yue Z. (2008) Characterization of 95 novel microsatellite markers for Zhikong scallop Chlamys farreri using FIASCO-colony hybridization and EST database mining. Fisheries Science 74, 516 526.
    • (2008) Fisheries Science , vol.74 , pp. 516-526
    • Zhan, A.1    Bao, Z.2    Hu, X.3    Wang, S.4    Peng, W.5    Wang, M.6    Hu, J.7    Liang, C.8    Yue, Z.9
  • 53
    • 35349006401 scopus 로고    scopus 로고
    • Fosmid library construction and initial analysis of end sequences in Zhikong Scallop (Chlamys farreri)
    • Zhang L., Bao Z., Cheng J., Li H., Huang X., Wang S., Zhang C. Hu J. (2007) Fosmid library construction and initial analysis of end sequences in Zhikong Scallop (Chlamys farreri). Marine Biotechnology 9, 606 612.
    • (2007) Marine Biotechnology , vol.9 , pp. 606-612
    • Zhang, L.1    Bao, Z.2    Cheng, J.3    Li, H.4    Huang, X.5    Wang, S.6    Zhang, C.7    Hu, J.8


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