Identification of candidate genes associated with CBB resistance in common bean HR45 (Phaseolus vulgaris L.) using cDNA-AFLP

Molecular Biology Reports

Volumn 38, Issue 1, 2011, Pages 75-81

  Shi, Chun ^a   Chaudhary, Sarita ^b   Yu, Kangfu ^a   Park, Soon J ^a   Navabi, Alireza ^a   McClean, Phillip E ^c  

^a HARROW RESEARCH AND DEVELOPMENT CENTRE   (Canada)

^b INDUSTRY CANADA   (Canada)

^c NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

Candidate genes; CBB resistance; cDNA AFLP; Comparative genomics; Phaseolus vulgaris L.; Transcript profiling

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ANTIBIOTIC RESISTANCE; ARTICLE; COMMON BACTERIAL BLIGHT; CONTROLLED STUDY; ENZYME REGULATION; GENE AMPLIFICATION; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE MAPPING; GENE SEQUENCE; GENETIC LINKAGE; INOCULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHASEOLUS VULGARIS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSCRIPTION REGULATION; XANTHOMONAS AXONOPODIS;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; DNA, COMPLEMENTARY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC ASSOCIATION STUDIES; IMMUNITY, INNATE; PHASEOLUS; PLANT DISEASES; PLANT LEAVES; QUANTITATIVE TRAIT LOCI; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; XANTHOMONAS AXONOPODIS;

BACTERIA (MICROORGANISMS); PHASEOLUS VULGARIS; XANTHOMONAS AXONOPODIS PV. PHASEOLI;

EID: 78651085392     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-010-0079-1     Document Type: Article

References (20)

1. PN Miklas JD Kelly SE Beebe MW Blair 2006 Common bean breeding for resistance against biotic and abiotic stresses: from classical to MAS breeding Euphytica 147 105 131 1:CAS:528:DC%2BD28XktlWlsrY%3D 10.1007/s10681-006-4600-5 279
2. DO Nino-Liu PC Ronald AJ Bogdanove 2006 Xanthomonas oryzae pathovars: model pathogens of a model crop Mol Plant Pathol 7 303 324 1:CAS:528: DC%2BD28XhtFGru7vL 10.1111/j.1364-3703.2006.00344.x 20507449 141 (Pubitemid 44337792)
3. S Liu K Yu SJ Park 2008 Development of STS markers and QTL validation for common bacterial blight resistance in common bean Plant Breed 127 62 68 1:CAS:528:DC%2BD1cXjtFemsrc%3D 108
4. S Pflieger V Lefebvre M Causse 2001 The candidate gene approach in plant genetics: a review Mol Breed 7 275 291 1:CAS:528:DC%2BD3MXnvFOkt7w%3D 10.1023/A:1011605013259 (Pubitemid 32918986)
5. De Luca V, Capasso C, Capasso A, Pastore M, Carginale V (2010) Gene expression profiling of phytoplasma-infected Madagascar periwinkle leaves using differential display. Mol Biol Rep. doi: 10.1007/s11033-010-9964-x
6. CT San FH Shah 2005 Differential gene expression and characterization of tissue-specific cDNA clones in oil palm using mRNA differential display Mol Biol Rep 32 227 235 1:CAS:528:DC%2BD2MXht1enurfF 10.1007/s11033-005-3142-6 16328884 (Pubitemid 41674321)
7. BC Meyers DW Galbraith T Nelson V Agrawal 2004 Methods for transcriptional profiling in plants. Be fruitful and replicate Plant Physiol 135 637 652 1:CAS:528:DC%2BD2cXltlKjtbo%3D 10.1104/pp.104.040840 15173570 (Pubitemid 38819009)
8. K Sharma AK Mishra RS Misra 2009 Identification and characterization of differentially expressed genes in the resistance reaction in taro infected with Phytophthora colocasiae Mol Biol Rep 36 1291 1297 1:CAS:528:DC%2BD1MXmtlOnsL8%3D 10.1007/s11033-008-9311-7 18622758
9. C Eckey M Korell K Leib D Biedenkopf C Jansen G Langen KH Kogel 2004 Identification of powdery mildew-induced barley genes by cDNA-AFLP: functional assessment of an early expressed MAP kinase Plant Mol Biol 55 1 15 1:CAS:528:DC%2BD2cXhtFSisLbO 10.1007/s11103-004-0275-2 15604661 158
10. JW Zhu YP Xu ZX Zhang WY Cao XZ Cai 2008 Transcript profiling for Avr4/Cf-4- and Avr9/Cf-9-dependent defence gene expression Eur J Plant Pathol 122 307 314 1:CAS:528:DC%2BD1cXhtVektL7E 10.1007/s10658-008-9294-1 114
11. YS Seo MR Rojas JY Lee SW Lee JS Jeon P Ronald WJ Lucas RL Gilbertson 2006 A viral resistance gene from common bean functions across plant families and is up-regulated in a non-virus-specific manner Proc Natl Acad Sci USA 103 11856 11861 1:CAS:528:DC%2BD28XosVSgs7c%3D 10.1073/pnas.0604815103 16880399 (Pubitemid 44215776)
12. McClean PE, Lavin M, Gepts P, Jackson SA (2008) Phaseolus vulgaris: a diploid model for soybean. In: Stacey G (ed) Genetics and genomics of soybean. Springer, Berlin, pp 55-76
13. SJ Park BN Dhanvantari 1987 Transfer of common blight resistance from Phaseolus coccineus Lam. to P. vulgaris L. through interspecific hybridization Can J Plant Sci 67 685 695 10.4141/cjps87-096
14. Towards a whole genome sequence of common bean, (Phaseolus vulgaris): background, approaches, applications [http://www.css.msu.edu/bic/PDF/Bean- Genomics-Status-2008.pdf]
15. W Qian ZJ Han CZ He 2008 Two-component signal transduction systems of Xanthomonas spp.: a lesson from genomics Mol Plant Microbe Interact 21 151 161 1:CAS:528:DC%2BD1cXhtVWru7g%3D 10.1094/MPMI-21-2-0151 18184059 140
16. Q Li F Chen LX Sun ZQ Zhang YN Yang ZH He 2006 Expression profiling of rice genes in early defense responses to blast and bacterial blight pathogens using cDNA microarray Physiol Mol Plant Pathol 68 51 60 1:CAS:528: DC%2BD28XhtFersrfP 10.1016/j.pmpp.2006.06.002 114 (Pubitemid 44633581)
17. N Mutlu AK Vidaver DP Coyne JR Steadman PA Lambrecht J Reiser 2008 Differential pathogenicity of Xanthomonas campestris pv. phaseoli and X. fuscans subsp fuscans strains on bean genotypes with common blight resistance Plant Dis 92 546 554 10.1094/PDIS-92-4-0546 172 (Pubitemid 351534519)
18. R Mahalingam A Gomez-Buitrago N Eckardt N Shah A Guevara-Garcia P Day R Raina NV Fedoroff 2003 Characterizing the stress/defense transcriptome of Arabidopsis Genome Biol 4 R20 10.1186/gb-2003-4-3-r20 12620105
19. CQ Zhang SA Ghabrial 2006 Development of bean pod mottle virus-based vectors for stable protein expression and sequence-specific virus-induced gene silencing in soybean Virology 344 401 411 1:CAS:528:DC%2BD28XhvFKjtQ%3D%3D 10.1016/j.virol.2005.08.046 16226780 314 (Pubitemid 43049627)
20. JR Andersen T Luebberstedt 2003 Functional markers in plants Trends Plant Sci 8 554 560 1:CAS:528:DC%2BD3sXos1Cnsrc%3D 10.1016/j.tplants.2003.09.010 14607101 (Pubitemid 37481534)