-
1
-
-
0031800763
-
Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: A possible role for the p2 domain of gag in RNA encapsidation
-
Kaye, J.F. and Lever, A.M. (1998) Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: a possible role for the p2 domain of Gag in RNA encapsidation. J. Virol., 72, 5877-5885. (Pubitemid 28283375)
-
(1998)
Journal of Virology
, vol.72
, Issue.7
, pp. 5877-5885
-
-
Kaye, J.F.1
Lever, A.M.L.2
-
2
-
-
0002501721
-
Synthesis and processing of viral RNA
-
Coffin, J.M., Hughes, S.H. and Vink M. (eds) Cold Spring Harbor Laboratory Press, New York
-
Rabson, A.B. and Graves, B.J. (1997) Synthesis and processing of viral RNA. In Coffin, J.M., Hughes, S.H. and Vink, M. (eds), Retroviruses. Cold Spring Harbor Laboratory Press, New York, pp. 205-262.
-
(1997)
Retroviruses
, pp. 205-262
-
-
Rabson, A.B.1
Graves, B.J.2
-
3
-
-
0028239204
-
Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro
-
DOI 10.1073/pnas.91.11.4945
-
Skripkin, E., Paillart, J.C., Marquet, R., Ehresmann, B. and Ehresmann, C. (1994) Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro. Proc. Natl Acad. Sci. USA, 91, 4945-4949. (Pubitemid 24177767)
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.11
, pp. 4945-4949
-
-
Skripkin, E.1
Paillart, J.-C.2
Marquet, R.3
Ehresmann, B.4
Ehresmann, C.5
-
4
-
-
9244219568
-
The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures
-
McBride, M.S. and Panganiban, A.T. (1996) The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures. J. Virol., 70, 2963-2973. (Pubitemid 26121910)
-
(1996)
Journal of Virology
, vol.70
, Issue.5
, pp. 2963-2973
-
-
Scott McBride, M.1
Panganiban, A.T.2
-
5
-
-
0029909841
-
Dimerization of retroviral genomic RNAs: Structural and functional implications
-
DOI 10.1016/S0300-9084(96)80010-1
-
Paillart, J.C., Marquet, R., Skripkin, E., Ehresmann, C. and Ehresmann, B. (1996) Dimerization of retroviral genomic RNAs: structural and functional implications. Biochimie, 78, 639-653. (Pubitemid 26397590)
-
(1996)
Biochimie
, vol.78
, Issue.7
, pp. 639-653
-
-
Paillart, J.C.1
Marquet, R.2
Skripkin, E.3
Ehresmann, C.4
Ehresmann, B.5
-
6
-
-
0029796006
-
Role of the DIS hairpin in replication of human immunodeficiency virus type 1
-
Berkhout, B. and van Wamel, J.L. (1996) Role of the DIS hairpin in replication of human immunodeficiency virus type 1. J. Virol., 70, 6723-6732. (Pubitemid 26307379)
-
(1996)
Journal of Virology
, vol.70
, Issue.10
, pp. 6723-6732
-
-
Berkhout, B.1
Van Wamel, J.L.B.2
-
7
-
-
40849123031
-
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
Wilkinson, K.A., Gorelick, R.J., Vasa, S.M., Guex, N., Rein, A., Mathews, D.H., Giddings, M.C. and Weeks, K.M. (2008) High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol., 6, e96.
-
(2008)
PLoS Biol
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
8
-
-
48749084874
-
Regulation of primate lentiviral RNA dimerization by structural entrapment
-
Baig, T.T., Strong, C.L., Lodmell, J.S. and Lanchy, J.M. (2008) Regulation of primate lentiviral RNA dimerization by structural entrapment. Retrovirology, 5, 65.
-
(2008)
Retrovirology
, vol.5
, pp. 65
-
-
Baig, T.T.1
Strong, C.L.2
Lodmell, J.S.3
Lanchy, J.M.4
-
9
-
-
0037432329
-
Elements located upstream and downstream of the major splice donor site influence the ability of HIV-2 leader RNA to dimerize in vitro
-
DOI 10.1021/bi0271190
-
Lanchy, J.M., Rentz, C.A., Ivanovitch, J.D. and Lodmell, J.S. (2003) Elements located upstream and downstream of the major splice donor site influence the ability of HIV-2 leader RNA to dimerize in vitro. Biochemistry, 42, 2634-2642. (Pubitemid 36330617)
-
(2003)
Biochemistry
, vol.42
, Issue.9
, pp. 2634-2642
-
-
Lanchy, J.-M.1
Rentz, C.A.2
Ivanovitch, J.D.3
Lodmell, J.S.4
-
10
-
-
0035937142
-
Identification of the in vitro HIV-2/SIV RNA dimerization site reveals striking differences with HIV-1
-
Jossinet, F., Lodmell, J.S., Ehresmann, C., Ehresmann, B. and Marquet, R. (2001) Identification of the in vitro HIV-2/SIV RNA dimerization site reveals striking differences with HIV-1. J. Biol. Chem., 276, 5598-5604.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 5598-5604
-
-
Jossinet, F.1
Lodmell, J.S.2
Ehresmann, C.3
Ehresmann, B.4
Marquet, R.5
-
11
-
-
0035943708
-
The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus type 2 RNA genome
-
Dirac, A.M., Huthoff, H., Kjems, J. and Berkhout, B. (2001) The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genome. J. Biol. Chem., 276, 32345-32352.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32345-32352
-
-
Dirac, A.M.1
Huthoff, H.2
Kjems, J.3
Berkhout, B.4
-
12
-
-
0042307264
-
A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA
-
DOI 10.1261/rna.5590603
-
Lanchy, J.M., Ivanovitch, J.D. and Lodmell, J.S. (2003) A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA. RNA, 9, 1007-1018. (Pubitemid 36899243)
-
(2003)
RNA
, vol.9
, Issue.8
, pp. 1007-1018
-
-
Lanchy, J.-M.1
Ivanovitch, J.D.2
Lodmell, J.S.3
-
13
-
-
0036301440
-
Alternate usage of two dimerization initiation sites in HIV-2 viral RNA in vitro
-
Lanchy, J.M. and Lodmell, J.S. (2002) Alternate usage of two dimerization initiation sites in HIV-2 viral RNA in vitro. J. Mol. Biol., 319, 637-648.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 637-648
-
-
Lanchy, J.M.1
Lodmell, J.S.2
-
14
-
-
0027390734
-
In vitro dimerization of HIV-2 leader RNA in the absence of PuGGAPuA motifs
-
Berkhout, B., Essink, B.B. and Schoneveld, I. (1993) In vitro dimerization of HIV-2 leader RNA in the absence of PuGGAPuA motifs. FASEB J., 7, 181-187. (Pubitemid 23034032)
-
(1993)
FASEB Journal
, vol.7
, Issue.1
, pp. 181-187
-
-
Berkhout, B.1
Oude Essink, B.B.2
Schoneveld, I.3
-
15
-
-
2542496713
-
Role of the trans-activation response element in dimerization of HIV-1 RNA
-
DOI 10.1074/jbc.M314326200
-
Andersen, E.S., Contera, S.A., Knudsen, B., Damgaard, C.K., Besenbacher, F. and Kjems, J. (2004) Role of the trans-activation response element in dimerization of HIV-1 RNA. J. Biol. Chem., 279, 22243-22249. (Pubitemid 38679420)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.21
, pp. 22243-22249
-
-
Andersen, E.S.1
Contera, S.A.2
Knudsen, B.3
Damgaard, C.K.4
Besenbacher, F.5
Kjems, J.6
-
16
-
-
0035038089
-
Two alternating structures of the HIV-1 leader RNA
-
DOI 10.1017/S1355838201001881
-
Huthoff, H. and Berkhout, B. (2001) Two alternating structures of the HIV-1 leader RNA. RNA., 7, 143-157. (Pubitemid 32381937)
-
(2001)
RNA
, vol.7
, Issue.1
, pp. 143-157
-
-
Huthoff, H.1
Berkhout, B.2
-
17
-
-
0037096843
-
Regulated HIV-2 RNA dimerization by means of alternative RNA conformations
-
Dirac, A.M., Huthoff, H., Kjems, J. and Berkhout, B. (2002) Regulated HIV-2 RNA dimerization by means of alternative RNA conformations. Nucleic Acids Res., 30, 2647-2655. (Pubitemid 34679770)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.12
, pp. 2647-2655
-
-
Dirac, A.M.G.1
Huthoff, H.2
Kjems, J.3
Berkhout, B.4
-
18
-
-
9144247039
-
First snapshots of the HIV-1 RNA structure in infected cells and in virions
-
DOI 10.1074/jbc.M408294200
-
Paillart, J.C., Dettenhofer, M., Yu, X.F., Ehresmann, C., Ehresmann, B. and Marquet, R. (2004) First snapshots of the HIV-1 RNA structure in infected cells and in virions. J. Biol. Chem., 279, 48397-48403. (Pubitemid 39540996)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.46
, pp. 48397-48403
-
-
Paillart, J.-C.1
Dettenhofer, M.2
Yu, X.-F.3
Ehresmann, C.4
Ehresmann, B.5
Marquet, R.6
-
19
-
-
0035194356
-
The major human immunodeficiency virus type 2 (HIV-2) packaging signal is present on all HIV-2 RNA species: Cotranslational RNA encapsidation and limitation of Gag protein confer specificity
-
DOI 10.1128/JVI.75.24.12058-12069.2001
-
Griffin, S.D., Allen, J.F. and Lever, A.M. (2001) The major human immunodeficiency virus type 2 (HIV-2) packaging signal is present on all HIV-2 RNA species: cotranslational RNA encapsidation and limitation of Gag protein confer specificity. J. Virol., 75, 12058-12069. (Pubitemid 33115878)
-
(2001)
Journal of Virology
, vol.75
, Issue.24
, pp. 12058-12069
-
-
Griffin, S.D.C.1
Allen, J.F.2
Lever, A.M.L.3
-
20
-
-
38949146363
-
Dimerisation of HIV-2 genomic RNA is linked to efficient RNA packaging, normal particle maturation and viral infectivity
-
L'Hernault, A., Greatorex, J.S., Crowther, R.A. and Lever, A.M. (2007) Dimerisation of HIV-2 genomic RNA is linked to efficient RNA packaging, normal particle maturation and viral infectivity. Retrovirology, 4, 90.
-
(2007)
Retrovirology
, vol.4
, pp. 90
-
-
L'Hernault, A.1
Greatorex, J.S.2
Crowther, R.A.3
Lever, A.M.4
-
21
-
-
33947413060
-
An extended stem-loop 1 is necessary for human immunodeficiency virus type 2 replication and affects genomic RNA encapsidation
-
DOI 10.1128/JVI.02025-06
-
Lanchy, J.M. and Lodmell, J.S. (2007) An extended stem-loop 1 is necessary for human immunodeficiency virus type 2 replication and affects genomic RNA encapsidation. J. Virol., 81, 3285-3292. (Pubitemid 46456637)
-
(2007)
Journal of Virology
, vol.81
, Issue.7
, pp. 3285-3292
-
-
Lanchy, J.-M.1
Lodmell, J.S.2
-
22
-
-
4344562120
-
Splicing affects presentation of RNA dimerization signals in HIV-2 in vitro
-
DOI 10.1093/nar/gkh800
-
Lanchy, J.M., Szafran, Q.N. and Lodmell, J.S. (2004) Splicing affects presentation of RNA dimerization signals in HIV-2 in vitro. Nucleic Acids Res., 32, 4585-4595. (Pubitemid 39317736)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.15
, pp. 4585-4595
-
-
Lanchy, J.-M.1
Szafran, Q.N.2
Lodmell, J.S.3
-
23
-
-
0030366242
-
Structure and function of the human immunodeficiency virus leader RNA
-
Berkhout, B. (1996) Structure and function of the human immunodeficiency virus leader RNA. Prog. Nucleic Acid Res. Mol. Biol., 54, 1-34.
-
(1996)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.54
, pp. 1-34
-
-
Berkhout, B.1
-
24
-
-
34447511202
-
HIV-2 RNA dimerization is regulated by intramolecular interactions in vitro
-
DOI 10.1261/rna.483807
-
Baig, T.T., Lanchy, J.M. and Lodmell, J.S. (2007) HIV-2 RNA dimerization is regulated by intramolecular interactions in vitro. RNA, 13, 1341-1354. (Pubitemid 47080478)
-
(2007)
RNA
, vol.13
, Issue.8
, pp. 1341-1354
-
-
Baig, T.T.1
Lanchy, J.-M.2
Lodmell, J.S.3
-
25
-
-
0038176532
-
A novel long distance base-pairing interaction in human immunodeficiency virus type 1 rna occludes the gag start codon
-
DOI 10.1074/jbc.M210291200
-
Abbink, T.E. and Berkhout, B. (2003) A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon. J. Biol. Chem., 278, 11601-11611. (Pubitemid 36792722)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.13
, pp. 11601-11611
-
-
Abbink, T.E.M.1
Berkhout, B.2
-
26
-
-
0031679786
-
Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: Significance for viral replication
-
DOI 10.1016/S0968-0004(98)01256-0, PII S0968000498012560
-
Rein, A., Henderson, L.E. and Levin, J.G. (1998) Nucleic-acid-chaperone activity of retroviral nucleocapsid proteins: significance for viral replication. Trends Biochem. Sci., 23, 297-301. (Pubitemid 28461895)
-
(1998)
Trends in Biochemical Sciences
, vol.23
, Issue.8
, pp. 297-301
-
-
Rein, A.1
Henderson, L.E.2
Levin, J.G.3
-
27
-
-
0032529251
-
Mapping the RNA binding sites for human immunodeficiency virus type-1 Gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions
-
DOI 10.1093/nar/26.16.3667
-
Damgaard, C.K., Dyhr-Mikkelsen, H. and Kjems, J. (1998) Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and-2 untranslated leader regions. Nucleic Acids Res., 26, 3667-3676. (Pubitemid 28367971)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.16
, pp. 3667-3676
-
-
Damgaard, C.K.1
Dyhr-Mikkelsen, H.2
Kjems, J.3
-
28
-
-
2242469712
-
Structure of the HIV-1 nucleocapsid protein bound to the SL3 ψ-RNA recognition element
-
DOI 10.1126/science.279.5349.384
-
De Guzman, R.N., Wu, Z.R., Stalling, C.C., Pappalardo, L., Borer, P.N. and Summers, M.F. (1998) Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science, 279, 384-388. (Pubitemid 28063374)
-
(1998)
Science
, vol.279
, Issue.5349
, pp. 384-388
-
-
De Guzman, R.N.1
Wu, Z.R.2
Stalling, C.C.3
Pappalardo, L.4
Borer, P.N.5
Summers, M.F.6
-
29
-
-
0029808307
-
Viral RNA binding properties of human immunodeficiency virus type-2 (HIV-2) nucleocapsid protein-derived synthetic peptides
-
Komatsu, H., Tsukahara, T. and Tozawa, H. (1996) Viral RNA binding properties of human immunodeficiency virus type-2 (HIV-2) nucleocapsid protein-derived synthetic peptides. Biochem. Mol. Biol. Int., 38, 1143-1154. (Pubitemid 26334728)
-
(1996)
Biochemistry and Molecular Biology International
, vol.38
, Issue.6
, pp. 1143-1154
-
-
Komatsu, H.1
Tsukahara, T.2
Tozawa, H.3
-
30
-
-
0026628854
-
Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers
-
De Rocquigny, H., Gabus, C., Vincent, A., Fournie-Zaluski, M.C., Roques, B. and Darlix, J.L. (1992) Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers. Proc. Natl Acad. Sci. USA, 89, 6472-6476.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 6472-6476
-
-
De Rocquigny, H.1
Gabus, C.2
Vincent, A.3
Fournie-Zaluski, M.C.4
Roques, B.5
Darlix, J.L.6
-
31
-
-
0030606301
-
HIV-1 reverse transcriptase discriminates against non-self tRNA primers
-
DOI 10.1006/jmbi.1996.0638
-
Oude Essink, B.B., Das, A.T. and Berkhout, B. (1996) HIV-1 reverse transcriptase discriminates against non-self tRNA primers. J. Mol. Biol., 264, 243-254. (Pubitemid 26402695)
-
(1996)
Journal of Molecular Biology
, vol.264
, Issue.2
, pp. 243-254
-
-
Oude Essink, B.B.1
Das, A.T.2
Berkhout, B.3
-
32
-
-
0030638456
-
Mutagenesis and gene fusion by megaprimer PCR
-
White, B.A. (ed.) Humana Press, Totawa, NJ
-
Barik, S. (1997) Mutagenesis and gene fusion by megaprimer PCR. In White, B.A. (ed.), PCR Cloning Protocols. Humana Press, Totawa, NJ, pp. 173-182.
-
(1997)
PCR Cloning Protocols
, pp. 173-182
-
-
Barik, S.1
-
33
-
-
33745157219
-
New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5′ end of the HIV-2 leader RNA
-
DOI 10.1093/nar/gkl373
-
Pachulska-Wieczorek, K., Purzycka, K.J. and Adamiak, R.W. (2006) New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5' end of the HIV-2 leader RNA. Nucleic Acids Res., 34, 2984-2997. (Pubitemid 44540426)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.10
, pp. 2984-2997
-
-
Pachulska-Wieczorek, K.1
Purzycka, K.J.2
Adamiak, R.W.3
-
34
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
DOI 10.1073/pnas.0401799101
-
Mathews, D.H., Disney, M.D., Childs, J.L., Schroeder, S.J., Zuker, M. and Turner, D.H. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl Acad. Sci. USA, 101, 7287-7292. (Pubitemid 38638025)
-
(2004)
Proceedings of the National Academy of Sciences of the United States of America
, vol.101
, Issue.19
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
35
-
-
0019051754
-
Chemical probes for higher-order structure in RNA
-
Peattie, D.A. and Gilbert, W. (1980) Chemical probes for higher-order structure in RNA. Proc. Natl Acad. Sci. USA, 77, 4679-4682.
-
(1980)
Proc. Natl Acad. Sci. USA
, vol.77
, pp. 4679-4682
-
-
Peattie, D.A.1
Gilbert, W.2
-
36
-
-
0343308108
-
Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs
-
DOI 10.1006/jmbi.1997.1462
-
Ciesiolka, J., Michalowski, D., Wrzesinski, J., Krajewski, J. and Krzyzosiak, W.J. (1998) Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs. J. Mol. Biol., 275, 211-220. (Pubitemid 28029999)
-
(1998)
Journal of Molecular Biology
, vol.275
, Issue.2
, pp. 211-220
-
-
Ciesiolka, J.1
Michalowski, D.2
Wrzesinski, J.3
Krajewski, J.4
Krzyzosiak, W.J.5
-
37
-
-
0024297759
-
Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe
-
Krzyzosiak, W.J., Marciniec, T., Wiewiorowski, M., Romby, P., Ebel, J.P. and Giege, R. (1988) Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe. Biochemistry, 27, 5771-5777.
-
(1988)
Biochemistry
, vol.27
, pp. 5771-5777
-
-
Krzyzosiak, W.J.1
Marciniec, T.2
Wiewiorowski, M.3
Romby, P.4
Ebel, J.P.5
Giege, R.6
-
38
-
-
33947720028
-
Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson, K.A., Merino, E.J. and Weeks, K.M. (2006) Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat. Protoc., 1, 1610-1616.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
39
-
-
13944278373
-
SAFA: Semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments
-
DOI 10.1261/rna.7214405
-
Das, R., Laederach, A., Pearlman, S.M., Herschlag, D. and Altman, R.B. (2005) SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments. RNA, 11, 344-354. (Pubitemid 40270826)
-
(2005)
RNA
, vol.11
, Issue.3
, pp. 344-354
-
-
Das, R.1
Laederach, A.2
Pearlman, S.M.3
Herschlag, D.4
Altman, R.B.5
-
40
-
-
33750356022
-
Architecture of a gamma retroviral genomic RNA dimer
-
DOI 10.1021/bi060521k
-
Badorrek, C.S. and Weeks, K.M. (2006) Architecture of a gamma retroviral genomic RNA dimer. Biochemistry, 45, 12664-12672. (Pubitemid 44630851)
-
(2006)
Biochemistry
, vol.45
, Issue.42
, pp. 12664-12672
-
-
Badorrek, C.S.1
Weeks, K.M.2
-
41
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by Selective 2′-Hydroxyl Acylation and Primer Extension (SHAPE)
-
DOI 10.1021/ja043822v
-
Merino, E.J., Wilkinson, K.A., Coughlan, J.L. and Weeks, K.M. (2005) RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc., 127, 4223-4231. (Pubitemid 40463047)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.12
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
42
-
-
73849110514
-
Secondary structure of the mature ex virio Moloney murine leukemia virus genomic RNA dimerization domain
-
Gherghe, C., Leonard, C.W., Gorelick, R.J. and Weeks, K.M. (2010) Secondary structure of the mature ex virio Moloney murine leukemia virus genomic RNA dimerization domain. J. Virol., 84, 898-906.
-
(2010)
J. Virol.
, vol.84
, pp. 898-906
-
-
Gherghe, C.1
Leonard, C.W.2
Gorelick, R.J.3
Weeks, K.M.4
-
43
-
-
0026528771
-
Structural features in TAR RNA of human and simian immunodeficiency viruses: A phylogenetic analysis
-
Berkhout, B. (1992) Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis. Nucleic Acids Res., 20, 27-31.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 27-31
-
-
Berkhout, B.1
-
44
-
-
48949118745
-
Optimization of the doxycycline-dependent simian immunodeficiency virus through in vitro evolution
-
Das, A.T., Klaver, B., Centlivre, M., Harwig, A., Ooms, M., Page, M., Almond, N., Yuan, F., Piatak, M. Jr, Lifson, J.D. et al. (2008) Optimization of the doxycycline-dependent simian immunodeficiency virus through in vitro evolution. Retrovirology, 5, 44.
-
(2008)
Retrovirology
, vol.5
, pp. 44
-
-
Das, A.T.1
Klaver, B.2
Centlivre, M.3
Harwig, A.4
Ooms, M.5
Page, M.6
Almond, N.7
Yuan, F.8
Piatak Jr., M.9
Lifson, J.D.10
-
45
-
-
0027267286
-
Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site
-
Berkhout, B. and Schoneveld, I. (1993) Secondary structure of the HIV-2 leader RNA comprising the tRNA-primer binding site. Nucleic Acids Res., 21, 1171-1178. (Pubitemid 23155612)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.5
, pp. 1171-1178
-
-
Berkhout, B.1
Schoneveld, L.2
-
46
-
-
0037453234
-
Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7
-
DOI 10.1016/S0022-2836(03)00244-4
-
Beltz, H., Azoulay, J., Bernacchi, S., Clamme, J.P., Ficheux, D., Roques, B., Darlix, J.L. and Mely, Y. (2003) Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7. J. Mol. Biol., 328, 95-108. (Pubitemid 36390283)
-
(2003)
Journal of Molecular Biology
, vol.328
, Issue.1
, pp. 95-108
-
-
Beltz, H.1
Azoulay, J.2
Bernacchi, S.3
Clamme, J.-P.4
Ficheux, D.5
Roques, B.6
Darlix, J.-L.7
Mely, Y.8
-
47
-
-
0035932997
-
Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching
-
DOI 10.1073/pnas.101033198
-
Williams, M.C., Rouzina, I., Wenner, J.R., Gorelick, R.J., Musier-Forsyth, K. and Bloomfield, V.A. (2001) Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching. Proc. Natl Acad. Sci. USA, 98, 6121-6126. (Pubitemid 32488203)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.11
, pp. 6121-6126
-
-
Williams, M.C.1
Rouzina, I.2
Wenner, J.R.3
Gorelick, R.J.4
Musier-Forsyth, K.5
Bloomfield, V.A.6
-
48
-
-
0035875554
-
Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA
-
Huthoff, H. and Berkhout, B. (2001) Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA. Nucleic Acids Res., 29, 2594-2600. (Pubitemid 32600316)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.12
, pp. 2594-2600
-
-
Huthoff, H.1
Berkhout, B.2
-
49
-
-
0035394799
-
Lys3 duplex
-
Freund, F., Boulme, F., Litvak, S. and Tarrago-Litvak, L. (2001) Initiation of HIV-2 reverse transcription: a secondary structure model of the RNA-tRNA(Lys3) duplex. Nucleic Acids Res., 29, 2757-2765. (Pubitemid 32685038)
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.13
, pp. 2757-2765
-
-
Freund, F.1
Boulme, F.2
Litvak, S.3
Tarrago-Litvak, L.4
-
50
-
-
66149164568
-
The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7
-
Matsui, T., Tanaka, T., Endoh, H., Sato, K., Tanaka, H., Miyauchi, E., Kawashima, Y., Nagai-Makabe, M., Komatsu, H., Kohno, T. et al. (2009) The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7. Biochemistry, 48, 4314-4323.
-
(2009)
Biochemistry
, vol.48
, pp. 4314-4323
-
-
Matsui, T.1
Tanaka, T.2
Endoh, H.3
Sato, K.4
Tanaka, H.5
Miyauchi, E.6
Kawashima, Y.7
Nagai-Makabe, M.8
Komatsu, H.9
Kohno, T.10
-
51
-
-
0031935140
-
Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides
-
Fisher, R.J., Rein, A., Fivash, M., Urbaneja, M.A., Casas-Finet, J.R., Medaglia, M. and Henderson, L.E. (1998) Sequence-specific binding of human immunodeficiency virus type 1 nucleocapsid protein to short oligonucleotides. J. Virol., 72, 1902-1909. (Pubitemid 28100742)
-
(1998)
Journal of Virology
, vol.72
, Issue.3
, pp. 1902-1909
-
-
Fisher, R.J.1
Rein, A.2
Fivash, M.3
Urbaneja, M.A.4
Casas-Finet, J.R.5
Medaglia, M.6
Henderson, L.E.7
-
52
-
-
34248160458
-
Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein
-
DOI 10.1016/j.jmb.2007.03.065, PII S0022283607004317
-
Turner, K.B., Hagan, N.A. and Fabris, D. (2007) Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein. J. Mol. Biol., 369, 812-828. (Pubitemid 46709928)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.3
, pp. 812-828
-
-
Turner, K.B.1
Hagan, N.A.2
Fabris, D.3
-
53
-
-
67650702583
-
A 5'UTR-spliced mRNA isoform is specialized for enhanced HIV-2 gag translation
-
Strong, C.L., Lanchy, J.M., Dieng-Sarr, A., Kanki, P.J. and Lodmell, J.S. (2009) A 5'UTR-spliced mRNA isoform is specialized for enhanced HIV-2 gag translation. J. Mol. Biol., 391, 426-437.
-
(2009)
J. Mol. Biol.
, vol.391
, pp. 426-437
-
-
Strong, C.L.1
Lanchy, J.M.2
Dieng-Sarr, A.3
Kanki, P.J.4
Lodmell, J.S.5
-
54
-
-
0030791407
-
A high affinity binding site for the HIV-1 nucleocapsid protein
-
DOI 10.1093/nar/25.5.1042
-
Berglund, J.A., Charpentier, B. and Rosbash, M. (1997) A high affinity binding site for the HIV-1 nucleocapsid protein. Nucleic Acids Res., 25, 1042-1049. (Pubitemid 27298275)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.5
, pp. 1042-1049
-
-
Berglund, J.A.1
Charpentier, B.2
Rosbash, M.3
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