Evaluation of Cellulolytic and Hemicellulolytic Abilities of Fungi Isolated from Coffee Residue and Sawdust Composts

Microbes and Environments

Volumn 26, Issue 3, 2011, Pages 220-227

  Eida, Mohamed Fathallah ^a,b   Nagaoka, Toshinori ^a   Wasaki, Jun ^a   Kouno, Kenji ^a  

^a HIROSHIMA UNIVERSITY   (Japan)

^b NATIONAL RESEARCH CENTRE   (Egypt)

Author keywords

AZCL substrates; Cellulolytic activity; Compost; Fungi; Hemicellulolytic activity

Indexed keywords

CELLULASE; CELLULOSE; FUNGAL PROTEIN; GLYCOSIDASE; HEMICELLULOSE; POLYSACCHARIDE;

ARTICLE; BIOREMEDIATION; CHEMISTRY; CLASSIFICATION; FUNGUS; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; SOIL; WASTE DISPOSAL;

BIODEGRADATION, ENVIRONMENTAL; CELLULASE; CELLULOSE; FUNGAL PROTEINS; FUNGI; GLYCOSIDE HYDROLASES; MOLECULAR SEQUENCE DATA; POLYSACCHARIDES; REFUSE DISPOSAL; SOIL; SOIL MICROBIOLOGY;

ASPERGILLUS; ASPERGILLUS SP.; CONIOCHAETA; FUNGI; FUSARIUM; GALACTOMYCES; MUCOR; PENICILLIUM; PENICILLIUM CRUSTOSUM; PENICILLIUM SP.; PENICILLIUM VERRUCULOSUM; TRICHODERMA; TRITICUM AESTIVUM;

EID: 80052450295     PISSN: 13426311     EISSN: 13474405     Source Type: Journal    
DOI: 10.1264/jsme2.ME10210     Document Type: Article

References (59)

1. Abdel-Sater, M.A., and A.H.M. El-Said. 2001. Xylan-decomposing fungi and xylanolytic activity in agricultural and industrial wastes. Int. Biodeterior. Biodegrad. 47:15-21.
2. Ainsworth, G.C., F.K. Sparrow, and A.S. Sussman (ed.). 1973. The Fungi: An Advanced Treatise, vol. 4A. Academic press, New York.
3. Alves, M.H., G.M. Campos-Takaki, A.L.F. Porto, and A.I. Milanez. 2002. Screening of Mucor spp. for the production of amylase, lipase, polygalacturonase and protease. Braz. J. Microbiol. 33:325-330.
4. Anastasi, A., G.C. Varese, and V.F. Marchisio. 2005. Isolation and identification of fungal communities in compost and vermicompost. Mycologia 97:33-44.
5. Anderson, I.C., C.D. Campbell, and J.I. Prosser. 2003. Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ. Microbiol. 5:36-47.
6. Ashraf, R., F. Shahid, and T.A. Ali. 2007. Association of fungi, bacteria and actinomycetes with different composts. Pak. J. Bot. 39:2141-2151.
7. Aygan, A., and B. Arikan. 2008. A new halo-alkaliphilic, thermostable endoglucanase from moderately halophilic Bacillus sp. C14 isolated from van Soda lake. Int. J. Agric. Biol. 10:369-374.
8. th edn.). Macmillan Publication Company, New York.
9. Béguin, P., and J.P. Aubert. 1994. The biological degradation of cellulose. FEMS Microbial. Rev. 13:25-58.
10. 14C-ring labeled TNT. Int. Biodeterior. Biodegrad. 35:421-430.
11. Bonito, G., O.S. Isikhuemhen, and R. Vilgalys. 2010. Identification of fungi associated with municipal compost using DNA-based techniques. Bioresour. Technol. 101:1021-1027.
12. Brand, D., A. Pandey, S. Roussos, and C.R. Soccol. 2000. Biological detoxification of coffee husk by filamentous fungi using a solid state fermentation system. Enzyme Microb. Technol. 27:127-133.
13. Chàvez, R., P. Bull, and J. Eyzaguirre. 2006. The xylanolytic enzyme system from the genus Penicillium. J. Biotechnol. 123:413-433.
14. Chen, H., X. Li, and L.G. Ljungdahl. 1997. Sequencing of a 1,3-1,4-ββ-D-glucanase (lichenase) from the anaerobic fungus Orpinomyces strain PC-2: Properties of the enzyme expressed in Escherichia coli and evidence that the gene has a bacterial origin. J. Bacteriol. 179:6028-6034.
15. Cohen, R., and Y. Hadar. 2001. The roles of fungi in agricultural waste conversion, p. 305-334. In G.M. Gadd (ed.), Fungi in Bio-remediation. Cambridge University Press, Cambridge.
16. Coman, G., M. Cotarlet, G. Bahrim, and P. Stougaard. 2008. Increasing the efficiency of screening streptomycetes able to produce glucanases by using insoluble chromogenic substrates. Roum. Biotechnol. Lett. 13: supplement, 20-25.
17. Damm, U., P.H. Fourie, and P.W. Crous. 2010. Coniochaeta (Lecythophora), Collophora gen. nov. and Phaeomoniella species associated with wood necroses of Prunus trees. Persoonia 24:60-80.
18. de Hoog, G.S., and M. Th. Smith. 2004. Ribosomal gene phylogeny and species delimitation in Geotrichum and its teleomorphs. Stud. Mycol. 50:489-515.
19. de Siqueira, F.G., E.G. de Siqueira, P.M.D. Jaramillo, M.H.L. Silveira, J. Andreaus, F.A. Couto, L.R. Batista, and E.X.F. Filho. 2010. The potential of agro-industrial residues for production of holocellulase from filamentous fungi. Int. Biodeterior. Biodegrad. 64:20-26.
20. Decker, S.R., W.S. Adney, E. Jennings, T.B. Vinzant, and M.E. Himmel. 2003. Automated filter paper assay for determination of cellulase activity. Appl. Biochem. Biotechnol. 107:689-703.
21. Duedahl-Olesen, L., L.H. Pedersen, and K.L. Larsen. 2000. Suitability and limitations of methods for characterization of activity of malto-oligosaccharide-forming amylases. Carbohydr. Res. 329:109-119.
22. Gawande, P.V., and M.Y. Kamat. 2000. Production of xylanases by immobilized Aspergillus sp. using lignocellulosic waste. World J. Microbiol. Biotechnol. 16:111-112.
23. Hatamoto, M., T. Tanahashi, J. Murase, K. Matsuya, M. Hayashi, M. Kimura, and S. Asakawa. 2008. Eukaryotic communities associated with the decomposition of rice straw compost in a Japanese rice paddy field estimated by DGGE analysis. Biol. Fertil. Soils 44:527- 532.
24. Hortin, G.L., I. Warshawsky, and M. Laude-Sharp. 2001. Macro-molecular chromogenic substrates for measuring proteinase activity. Clin. Chem. 47:215-222.
25. Howard, R.L., E. Abotsi, E.L. Jansen van Rensburg, and S. Howard. 2003. Lignocellulose biotechnology: Issues of bioconversion and enzyme production. Afr. J. Biotechnol. 2:602-619.
26. Jahangeer, S., N. Khan, S. Jahangeer, M. Sohail, S. Shahzad, A. Ahmad, and S.A. Khan. 2005. Screening and characterization of fungal cellulases isolated from the native environmental source. Pak. J. Bot. 37:739-748.
27. Jasalavich, C.A., A. Ostrofsky, and J. Jellison. 2000. Detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA. Appl. Environ. Microbiol. 66:4725-4734.
28. Jing-Chun, T., Q. Zhou, and A. Katayama. 2010. Effects of raw materials and bulking agents on the thermophilic composting process. J. Microbiol. Biotechnol. 20:925-934.
29. Kumar, R., S. Singh, and O.V. Singh. 2008. Bioconversion of lignocellulosic biomass: Biochemical and molecular perspectives. J. Ind. Microbiol. Biotechnol. 35:377-391.
30. Lievens, B., S. van Kerckhove, A. Justé, B.P.A. Cammue, O. Honnay, and H. Jacquemyn. 2010. From extensive clone libraries to comprehensive DNA arrays for the efficient and simultaneous detection and identification of orchid mycorrhizal fungi. J. Microbiol. Methods 80:76-85.
31. Lord, N.S., C.W. Kaplan, P. Shank, C.L. Kitts, and S.L. Elrod. 2002. Assessment of fungal diversity using terminal restriction fragment (TRF) pattern analysis: Comparison of 18S and ITS ribosomal regions. FEMS Microbiol. Ecol. 42:327-337.
32. Michaelsen, A., F. Pinzari, K. Ripka, W. Lubitz, and G. Piñar. 2006. Application of molecular techniques for identification of fungal communities colonising paper material. Int. Biodeterior. Biodegrad. 58:133-141.
33. Murashima, K., T. Nishimura, Y. Nakamura, J. Koga, T. Moriya, N. Sumida, T. Yaguchi, and T. Kono. 2002. Purification and characterization of new endo-1,4-β-D-glucanases from Rhizopus oryzae. Enzyme Microb. Technol. 30:319-326.
34. Noots, I., V. Derycke, K. Cornelis, C. Michiels, J.A. Delcour, R. Delrue, J.D. Keersmaeker, and T. Coppens. 2001. Degradation of starchy endosperm cell walls in nongerminating sterilized barley by fungi. J. Agric. Food Chem. 49:975-981.
35. Ofomaja, A.E., and Y.S. Ho. 2008. Effect of temperatures and pH on methyl violet biosorption by Mansonia wood sawdust. Bioresour. Technol. 99:5411-5417.
36. Pečiulyte, D. 2007. Isolation of cellulolytic fungi from waste paper gradual recycling materials. Ekologija 53:11-18.
37. Pedersen, M., M. Hollensted, L. Lange, and B. Andersen. 2009. Screening for cellulose and hemicellulose degrading enzymes from the fungal genus Ulocladium. Int. Biodeterior. Biodegrad. 63:484- 489.
38. Pérez, J., J. Muñoz-Dorado, T. de-la-Rubia, and J. Martínez. 2002. Biodegradation and biological treatments of cellulose, hemicellulose and lignin: An overview. Int. Microbiol. 5:53-63.
39. Pitt, J.I. 1994. The current role of Aspergillus and Penicillium in human and animal health. J. Med. Vet. Mycol. 32:17-32.
40. Purnomo, A.S., F. Koyama, T. Mori, and R. Kondo. 2010. DDT degradation potential of cattle manure compost. Chemosphere 80:619-624.
41. Sachslehner, A., B. Nidetzky, K.D. Kulbe, and D. Haltrich. 1998. Induction of mannanase, xylanase, and endoglucanase activities in Sclerotium rolfsii. Appl. Environ. Microbiol. 64:594-600.
42. Sánchez, C. 2009. Lignocellulosic residues: Biodegradation and bioconversion by fungi. Biotechnol. Adv. 27:185-194.
43. Sánchez, G., E.J. Olguín, and G. Mercado. 1999. Accelerated coffee pulp composting. Biodegradation 10:35-41.
44. Santos, T., J.R. Villanueva, and C. Nombela. 1977. Production and catabolite repression of Penicillium italicum β-glucanases. J. Bacteriol. 129:52-58.
45. Sinaǧ, A., S. Gülbay, B. Uskan, and M. Güllü. 2009. Comparative studies of intermediates produced from hydrothermal treatments of sawdust and cellulose. J. Supercrit. Fluids 50:121-127.
46. Singh, H. 2006. Mycoremediation: Fungal Bioremediation. John Wiley & Sons, Hoboken, New Jersey.
47. Sukumaran, R.K., R.R. Singhania, and A. Pandey. 2005. Microbial cellulases-production, applications and challenges. J. Sci. Ind. Res. 64:832-844.
48. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
49. Teather, R.M., and P.J. Wood. 1982. Use of congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl. Environ. Microbiol. 43:777- 780.
50. Ten, L.N., W.T. Im, M.K. Kim, M.S. Kang, and S.T. Lee. 2004. Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromo-genic substrates. J. Microbiol. Methods 56:375-382.
51. Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
52. Udagawa, S., K. Tubaki, Y. Horie, K. Miura, K. Minoura, M. Yamazaki, T. Yokoyama, and S. Watanbe. 1978. Kinrui Zukan (An illustration book of the fungus). Kodansha, Tokyo (in Japanese).
53. Valášková, V., J. Šnajdr, B. Bittner, T. Cajthaml, V. Merhautová, M. Hofrichter, and P. Baldrian. 2007. Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biol. Biochem. 39:2651-2660.
54. Varnaite, R., and V. Raudoniene. 2008. Destruction of hemicellulose in rye straw by micromycetes. Ekologija 54:169-172.
55. Vitikainen, M., M. Arvas, T. Pakula, M. Oja, M. Penttilä, and M. Saloheimo. 2010. Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties. BMC Genomics 11:441.
56. Wen, Z., W. Liao, and S. Chen. 2005. Production of cellulase/β-glucosidase by the mixed fungi culture Trichoderma reesei and Aspergillus phoenicis on dairy manure. Process Biochem. 40:3087- 3094.
57. White, T.J., T. Bruns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, p. 315-322. In M.A. Innis, D.H. Gelfand, J.J. Sninsky, and T.J. White (ed.), PCR Protocols: A Guide to Methods and Applications. Academic Press, New York.
58. Zhang, Y.H.P., M.E. Himmel, and J.R. Mielenz. 2006. Outlook for cellulase improvement: Screening and selection strategies. Biotechnol. Adv. 24:452-481.
59. Zhang, Z., S. Schwartz, L. Wagner, and W. Miller. 2000. A greedy algorithm for aligning DNA sequences. J. Comput. Biol. 7:203-214.