Eukaryotic communities associated with the decomposition of rice straw compost in a Japanese rice paddy field estimated by DGGE analysis

Biology and Fertility of Soils

Volumn 44, Issue 3, 2008, Pages 527-532

  Hatamoto, Masashi ^a   Tanahashi, Takanori ^a   Murase, Jun ^a   Matsuya, Kazuo ^b   Hayashi, Motoki ^b   Kimura, Makoto ^a   Asakawa, Susumu ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b AICHI PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Decomposition; Denaturing gradient gel electrophoresis analysis; Eukaryotic community; Paddy field; Rice straw compost

Indexed keywords

CULTIVATION; DECOMPOSITION; ESTIMATION METHOD; EUKARYOTE; FUNGUS; MICROBIAL COMMUNITY; PADDY FIELD; PHYLOGENETICS; PROTOZOAN; RICE; SOIL MICROORGANISM; STRAW;

ASCOMYCOTA; CHYTRIDIOMYCOTA; CILIOPHORA; DACTYLOPODIDA; EUGLYPHIDA; EUKARYOTA; FUNGI; ORYZA SATIVA (JAPONICA CULTIVAR-GROUP); PROTOZOA; ZYGOMYCETES; ZYGOMYCOTA;

EID: 38049010047     PISSN: 01782762     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00374-007-0239-1     Document Type: Article

References (14)

1. Aoki S (1996) Black-Box: data analysis on the www [WWW document]. http://aoki2.si.gunma-u.ac.jp/Blackbox/Blackbox.html
2. Cahyani VR, Watanabe A, Matsuya K, Asakawa S, Kimura M (2002) Succession of microbiota estimated by phospholipid fatty acid analysis and changes in organic constituents during the composting process of rice straw. Soil Sci Plant Nutr 48:735-743
3. Cahyani VR, Matsuya K, Asakawa S, Kimura M (2003) Succession and phylogenetic composition of bacterial communities responsible for the composting process of rice straw estimated by PCR-DGGE analysis. Soil Sci Plant Nutr 49:619-630
4. Cahyani VR, Matsuya K, Asakawa S, Kimura M (2004) Succession and phylogenetic profile of eukaryotic communities in the composting process of rice straw estimated by PCR-DGGE analysis. Biol Fertil Soils 40:334-344
5. Darbyshire JF (1994) Soil protozoa. CAB International, Oxon
6. Ekelund F, Ronn R (1994) Notes on protozoa in agricultural soil with emphasis on heterotrophic flagellates and naked amoebae and their ecology. FEMS Microbiol Rev 15:321-353
7. Foissner W (1987) Soil protozoa: fundamental problems, ecological significance, adaptations in cililates and testaceans, bioindicators, and guide to the literature. Prog Protistol 2:69-212
8. Hasebe A, Kanazawa S, Takai Y (1985) Microbial biomass in paddy soil II. "Microbial biomass carbon" measured by Jenkinson's fumigation method. Soil Sci Plant Nutr 31:349-359
9. Hayano K, Watanabe K, Asakawa S (1995) Behavior of selected microbial populations and their activity in rice and wheat rhizosphere and non-rhizosphere soils in long-term experimental paddy field with and without organic matter application in southwest Japan. Bull Kyushu Natl Agric Exp Stn 28:139-155 (in Japanese with English summary)
10. James TY, Porter D, Leander CA, Vilgalys R, Longcore JE (2000) Molecular phylogenetics of the Chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can J Bot 78:336-350
11. Nannipieri P, Ascher J, Ceccherini MT, Landi L, Pietramellara G, Renella G (2003) Microbial diversity and soil functions. Eur J Soil Sci 54:655-670
12. Shiota Y, Hasegawa T, Okimura I (1987) Effect of chemical fertilizers and rice straw compost on microorganisms in paddy soils. Soil Microorganisms 29:3-9 (in Japanese with English summary)
13. Tanahashi T, Murase J, Matsuya K, Asakawa S, Kimura M (2004) Microbial communities responsible for the decomposition of rice straw compost in a Japanese rice paddy field determined by phospholipid fatty acid (PLFA) analysis. Soil Sci Plant Nutr 50:1229-1236
14. Tanahashi T, Murase J, Matsuya K, Hayashi M, Kimura M, Asakawa S (2005) Bacterial communities responsible for the decomposition of rice straw compost in a Japanese rice paddy field estimated by DGGE analysis of amplified 16S rDNA and 16S rRNA fragments. Soil Sci Plant Nutr 51:351-360