Application of molecular techniques for identification of fungal communities colonising paper material

International Biodeterioration and Biodegradation

Volumn 58, Issue 3-4, 2006, Pages 133-141

  Michaelsen, Astrid ^a   Pinzari, Flavia ^b   Ripka, Katrin ^a   Lubitz, Werner ^a   Piñar, Guadalupe ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b Istituto Centrale per la Patologia del Libro   (Italy)

Author keywords

DGGE; Fungal communities; Internal spacer regions; Objects of art; PCR

Indexed keywords

BIODEGRADATION; ELECTROPHORESIS; FUNGI; PAPER PRODUCTS;

CULTURAL HERITAGE; DENATURING GRADIENT GEL ELECTROPHORESIS (DGGE); DETERIORATION AGENTS; FUNGAL COMMUNITIES; INTERNAL SPACER REGIONS; PCR;

MOLECULAR BIOLOGY;

BIODEGRADATION; BIOLOGICAL METHOD; COLONIZATION; COMMUNITY STRUCTURE; CULTURAL HERITAGE; DNA; EXTRACTION METHOD; FUNGUS; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; RESTORATION ECOLOGY;

BIODEGRADATION; ELECTROPHORESIS; FUNGI; MOLECULES; PAPER PRODUCTS;

FUNGI;

EID: 33751344618     PISSN: 09648305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ibiod.2006.06.019     Document Type: Article

References (30)

1. Abrusci C., Martin-Gonzalez A., Del Amo A., Catalina F., Collado J., and Platas G. Isolation and identification of bacteria and fungi from cinematographic films. International Biodeterioration & Biodegradation 56 (2005) 58-68
2. Anderson I.C., Campbell C.D., and Prosser J.I. Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Applied and Environmental Microbiology 5 (2003) 36-47
3. Arai H. Foxing caused by fungi: twenty-five years of study. International Biodeterioration & Biodegradation 46 (2000) 181-188
4. Cappitelli F., and Sorlini C. From papyrus to compact disc: the microbial deterioration of documentary heritage. Critical Reviews in Microbiology 31 (2005) 1-10
5. Corte A.M., Ferroni A., and Salvo V.S. Isolation of fungal species from test samples and maps damaged by foxing, and correlation between these species and the environment. International Biodeterioration & Biodegradation 51 (2003) 167-173
6. Di Bonaventura M.P., De Salle R., Bonacum J., and Koestler R.J. Phylogenetic trees, fungal infections and the Tiffany's drawings. In: Saiz-Jimenez C. (Ed). Molecular Biology and Cultural Heritage (2003), A.A. Balkema Pub., Lisse/Abindon/Exton (PA)/Tokyo 131-135
7. Di Bonaventura M.P., DeSalle R., Eveleigh D.E., Baldwin A., and Koestler R.J. Studies of fungal infestations of Tiffany's Drawings: limits and advantages of classical and molecular techniques. In: Koestler R.J., Koestler V.R., Charola A.E., and Nieto-Fernandez F.E. (Eds). Art, Biology, and Conservation: Biodeterioration of Works of Art. The Metropolitan Museum of Art (2003), Yale UniversityPress, New York, New Haven 94-109
8. van Elsas D., Duarte G.F., Keijzer-Wolters A., and Smit E. Analysis of the dynamics of fungal communities in soil via fungal-specific PCR of soil DNA followed by denaturing gradient gel electrophoresis. Journal of Microbiological Methods 43 (2000) 133-151
9. Fellers, G., Wegener, Papparstekik, 1991. Institutionen för papparstekik. Stockholm.
10. Florian M.-L.E., and Manning L. SEM analysis of irregular fungal spots in an 1854 book: population dynamics and species identification. International Biodeterioration & Biodegradation 46 (2000) 205-220
11. Gaskell G.J., Carter D.A., Britton W.J., Tovey E.R., Benyon F.H., and Lovborg U. Analysis of the internal transcribed spacer regions of ribosomal DNA in common airborne allergenic fungi. Electrophoresis 18 (1997) 1567-1569
12. Gonzalez J.M., and Saiz-Jimenez C. Application of molecular nucleic acid-based techniques for the study of microbial communities in monuments and artworks. International Microbiology 8 (2005) 189-194
13. Hawksworth D.L., and Rossman A.Y. Where are all the undescribed fungi?. Phytopathology 87 (1997) 888-891
14. Hughes K.W., Peterson R.H., Johnson J.E., Moncalvo J.M., Vilgalys R., Redhaed S.A., Thomas T., and McGhee L.L. Intragenic phylogeny of Collybia str. based on sequnces of ribosomal ITS and LSU regions. Mycological Research 105 (2001) 164-172
15. Jasalavich C.A., Ostrofsky A., and Jellison J. detection and identification of decay fungi in spruce wood by restriction fragment length polymorphism analysis of amplified genes encoding rRNA. Applied and Environmental Microbiology 66 (2000) 4725-4734
16. Kirkpatrick N., Reid I.D., Ziomek E., Ho C., and Paice M.G. Relationship between fungal biomass production and the brightening of hardwood kraft pulp by Coriolus versicolor. Applied and Environmental Microbiology 55 (1989) 1147-1152
17. Kozdroj J., and van Elsas J.D. Application of polymerase chain reaction-denaturing gradient gel electrophoresis for comparison of direct and indirect extraction methods of soil DNA used for microbial community fingerprinting. Biology and Fertility of Soils 31 (2000) 372-378
18. Kuske C.R., Banton K.L., Adorada D.L., Stark P.C., Hill K.K., and Jackson P.J. Small-scale DNA sample preparation method for field PCR detection of microbial cells and spores in soil. Applied and Environmental Microbiology 64 (1998) 2463-2472
19. de Lipthay J.R., Enzinger C., Johnsen K., Aamand J., and Sørensen S. Impact of DNA extraction method on bacterial community composition measured by denaturing gradient gel electrophoresis. Soil Biology and Biochemistry 36 (2004) 1607-1614
20. Lord N.S., Kaplan C.W., Shank P., Kitts C.L., and Elrod S.L. Assessment of fungal diversity using terminal restriction fragment pattern analysis: comparison of 18S and ITS ribosomal regions. FEMS Microbiology Ecology 42 (2002) 327-337
21. Muyzer G., De Waal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis: analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59 (1993) 695-700
22. Saad D.S., Kinsey G.C., Kim S., and Gaylarde C.C. Extraction of genomic DNA from filamentous fungi in biofilms on water-based paint coatings. International Biodeterioration & Biodegradation 54 (2004) 99-103
23. Saiz-Jimenez C. Deposition of airborne organic pollutants on historic buildings. Atmospheric Environment 27B (1993) 77-85
24. Schabereiter-Gurtner C., Piñar G., Lubitz W., and Rölleke S. An advanced strategy to identify bacterial communities on art objects. Journal of Microbiological Methods 45 (2001) 77-87
25. Smit E., Leeflang P., Glandorf B., van Elsas J.D., and Wernars K. Analysis of fungal diversity in the wheat rhizophere by sequencing of cloned PCR-amplfied genes encoding 18S rRNA and temperature gradient gel electrophoresis. Applied and Environmental Microbiology 65 (1999) 2614-2621
26. Szczepanowska H., and Cavaliere A.R. Fungal deterioration of 18th and 19th century documents: a case study of the Tilghman Family Collection, Wye House, Easton, Maryland. International Biodeterioration & Biodegradation 46 (2000) 245-249
27. Vainio E.J., and Hantula J. Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycological Research 104 (2000) 927-936
28. Westergaard K., Müller A.K., Christensen S., Bloem J., and Sørensen S.J. Effects of tylosin as a disturbance on the soil microbial community. Soil Biology and Biochemistry 33 (2001) 2061-2071
29. White T.J., Bruns T., Lee S., and Taylor J. Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. PCR Protocols: A Guide to Methods and Applications (1990), Academic Press, New York pp. 315-322
30. Zhou J., Bruns M.A., and Tiedje J.M. DNA recovery from soils of diverse composition. Applied and Environmental Microbiology 62 (1996) 316-322