-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S. F., et al. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
-
2
-
-
77958484635
-
Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes
-
Arbiol, C., A. M. Comeau, M. Kutateladze, R. Adamia, and H. M. Krisch. 2010. Mobile regulatory cassettes mediate modular shuffling in T4-type phage genomes. Genome Biol. Evol. 2:140-152.
-
(2010)
Genome Biol. Evol.
, vol.2
, pp. 140-152
-
-
Arbiol, C.1
Comeau, A.M.2
Kutateladze, M.3
Adamia, R.4
Krisch, H.M.5
-
3
-
-
0142072733
-
Application of host-specific bacteriophages to the surface of chicken skin leads to a reduction in recovery of Campylobacter jejuni
-
Atterbury, R. J., P. L. Connerton, C. E. Dodd, C. E. Rees, and I. F. Connerton. 2003. Application of host-specific bacteriophages to the surface of chicken skin leads to a reduction in recovery of Campylobacter jejuni. Appl. Environ. Microbiol. 69:6302-6306.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6302-6306
-
-
Atterbury, R.J.1
Connerton, P.L.2
Dodd, C.E.3
Rees, C.E.4
Connerton, I.F.5
-
4
-
-
0041528382
-
Isolation and characterization of Campylobacter bacteriophages from retail poultry
-
Atterbury, R. J., P. L. Connerton, C. E. Dodd, C. E. Rees, and I. F. Connerton. 2003. Isolation and characterization of Campylobacter bacteriophages from retail poultry. Appl. Environ. Microbiol. 69:4511-4518.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 4511-4518
-
-
Atterbury, R.J.1
Connerton, P.L.2
Dodd, C.E.3
Rees, C.E.4
Connerton, I.F.5
-
5
-
-
0027217835
-
The translational termination signal database
-
Brown, C. M., M. E. Dalphin, P. A. Stockwell, and W. P. Tate. 1993. The translational termination signal database. Nucleic Acids Res. 21:3119-3123.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3119-3123
-
-
Brown, C.M.1
Dalphin, M.E.2
Stockwell, P.A.3
Tate, W.P.4
-
6
-
-
77956482453
-
The in vivo efficacy of two administration routes of a phage cocktail to reduce numbers of Campylobacter coli and Campylobacter jejuni in chickens
-
Carvalho, C. M., et al. 2010. The in vivo efficacy of two administration routes of a phage cocktail to reduce numbers of Campylobacter coli and Campylobacter jejuni in chickens. BMC Microbiol. 10:232.
-
(2010)
BMC Microbiol.
, vol.10
, pp. 232
-
-
Carvalho, C.M.1
-
7
-
-
10044253266
-
Comparative genomics of the T4-Like Escherichia coli phage JS98: implications for the evolution of T4 phages
-
Chibani-Chennoufi, S., C. Canchaya, A. Bruttin, and H. Brüssow. 2004. Comparative genomics of the T4-Like Escherichia coli phage JS98: implications for the evolution of T4 phages. J. Bacteriol. 186:8276-8286.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 8276-8286
-
-
Chibani-Chennoufi, S.1
Canchaya, C.2
Bruttin, A.3
Brüssow, H.4
-
8
-
-
77958523185
-
T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology
-
Clokie, M. R., A. D. Millard, and N. H. Mann. 2010. T4 genes in the marine ecosystem: studies of the T4-like cyanophages and their role in marine ecology. Virol. J. 7:291.
-
(2010)
Virol. J.
, vol.7
, pp. 291
-
-
Clokie, M.R.1
Millard, A.D.2
Mann, N.H.3
-
9
-
-
77955010372
-
Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome
-
Comeau, A. M., C. Arbiol, and H. M. Krisch. 2010. Gene network visualization and quantitative synteny analysis of more than 300 marine T4-like phage scaffolds from the GOS metagenome. Mol. Biol. Evol. 27:1935-1944.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 1935-1944
-
-
Comeau, A.M.1
Arbiol, C.2
Krisch, H.M.3
-
10
-
-
34247602006
-
Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery
-
Comeau, A. M., C. Bertrand, A. Letarov, F. Tétart, and H. M. Krisch. 2007. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362:384-396.
-
(2007)
Virology
, vol.362
, pp. 384-396
-
-
Comeau, A.M.1
Bertrand, C.2
Letarov, A.3
Tétart, F.4
Krisch H., M.5
-
11
-
-
3242804614
-
Longitudinal study of Campylobacter jejuni bacteriophages and their hosts from broiler chickens
-
Connerton, P. L., et al. 2004. Longitudinal study of Campylobacter jejuni bacteriophages and their hosts from broiler chickens. Appl. Environ. Microbiol. 70:3877-3883.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 3877-3883
-
-
Connerton, P.L.1
-
12
-
-
0033485517
-
Improved microbial gene identification with GLIMMER
-
Delcher, A. L., D. Harmon, S. Kasif, O. White, and S. L. Salzberg. 1999. Improved microbial gene identification with GLIMMER. Nucleic Acids Res. 27:4636-4641.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
13
-
-
67349224692
-
T4 phages against Escherichia coli diarrhea: potential and problems
-
Denou, E., et al. 2009. T4 phages against Escherichia coli diarrhea: potential and problems. Virology 388:21-30.
-
(2009)
Virology
, vol.388
, pp. 21-30
-
-
Denou, E.1
-
14
-
-
0038730764
-
The diversity and evolution of the T4-type bacteriophages
-
Desplats, C., and H. M. Krisch. 2003. The diversity and evolution of the T4-type bacteriophages. Res. Microbiol. 154:259-267.
-
(2003)
Res. Microbiol.
, vol.154
, pp. 259-267
-
-
Desplats, C.1
Krisch, H.M.2
-
15
-
-
78649479393
-
Mobile DNA elements in T4 and related phages
-
Edgell, D. R., E. A. Gibb, and M. Belfort. 2010. Mobile DNA elements in T4 and related phages. Virol. J. 7:290.
-
(2010)
Virol. J.
, vol.7
, pp. 290
-
-
Edgell, D.R.1
Gibb, E.A.2
Belfort, M.3
-
16
-
-
64749083080
-
Application of a group II Campylobacter bacteriophage to reduce strains of Campylobacter jejuni and Campylobacter coli colonizing broiler chickens
-
El-Shibiny, A., et al. 2009. Application of a group II Campylobacter bacteriophage to reduce strains of Campylobacter jejuni and Campylobacter coli colonizing broiler chickens. J. Food Prot. 72:733-740.
-
(2009)
J. Food Prot.
, vol.72
, pp. 733-740
-
-
El-Shibiny, A.1
-
17
-
-
33748165572
-
A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
-
Filée, J., E. Bapteste, E. Susko, and H. M. Krisch. 2006. A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Mol. Biol. Evol. 23:1688-1696.
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1688-1696
-
-
Filée, J.1
Bapteste, E.2
Susko, E.3
Krisch, H.M.4
-
18
-
-
0346655232
-
The genome-sequenced variant of Campylobacter jejuni NCTC11168 and the original clonal clinical isolate differ markedly in colonization, gene expression, and virulence-associated phenotypes
-
Gaynor, E. C., et al. 2004. The genome-sequenced variant of Campylobacter jejuni NCTC11168 and the original clonal clinical isolate differ markedly in colonization, gene expression, and virulence-associated phenotypes. J. Bacteriol. 186:503-517.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 503-517
-
-
Gaynor, E.C.1
-
19
-
-
0035966548
-
A trial of biosecurity as a means to control Campylobacter infection of broiler chickens
-
Gibbens, J. C., S. J. Pascoe, S. J. Evans, R. H. Davies, and A. R. Sayers. 2001. A trial of biosecurity as a means to control Campylobacter infection of broiler chickens. Prev. Vet. Med. 48:85-99.
-
(2001)
Prev. Vet. Med.
, vol.48
, pp. 85-99
-
-
Gibbens, J.C.1
Pascoe, S.J.2
Evans, S.J.3
Davies, R.H.4
Sayers, A.R.5
-
20
-
-
0042028300
-
Reduction of experimental Salmonella and Campylobacter contamination of chicken skin by application of lytic bacteriophages
-
Goode, D., V. M. Allen, and P. A. Barrow. 2003. Reduction of experimental Salmonella and Campylobacter contamination of chicken skin by application of lytic bacteriophages. Appl. Environ. Microbiol. 69:5032-5036.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5032-5036
-
-
Goode, D.1
Allen, V.M.2
Barrow, P.A.3
-
21
-
-
34347230891
-
Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence
-
Gundogdu, O., et al. 2007. Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence. BMC Genomics 8:162.
-
(2007)
BMC Genomics
, vol.8
, pp. 162
-
-
Gundogdu, O.1
-
22
-
-
38149073890
-
Characterization of Campylobacter phages including analysis of host range by selected Campylobacter Penner serotypes
-
Hansen, V. M., H. Rosenquist, D. L. Baggesen, S. Brown, and B. B. Christensen. 2007. Characterization of Campylobacter phages including analysis of host range by selected Campylobacter Penner serotypes. BMC Microbiol. 7:90.
-
(2007)
BMC Microbiol.
, vol.7
, pp. 90
-
-
Hansen, V.M.1
Rosenquist, H.2
Baggesen, D.L.3
Brown, S.4
Christensen, B.B.5
-
23
-
-
0029159273
-
Keyhole limpet haemocyanin: negative staining in the presence of trehalose
-
Harris, J. R., W. Gebauer, and J. Markl. 1995. Keyhole limpet haemocyanin: negative staining in the presence of trehalose. Micron 26:25-33.
-
(1995)
Micron
, vol.26
, pp. 25-33
-
-
Harris, J.R.1
Gebauer, W.2
Markl, J.3
-
24
-
-
0043166251
-
Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54
-
Hertwig, S., et al. 2003. Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54. J. Mol. Biol. 331:605-622.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 605-622
-
-
Hertwig, S.1
-
26
-
-
73349119381
-
Isolation and characterization of bacteriophages specific for Campylobacter jejuni
-
Hwang, S., et al. 2009. Isolation and characterization of bacteriophages specific for Campylobacter jejuni. Microbiol. Immunol. 53:559-566.
-
(2009)
Microbiol. Immunol.
, vol.53
, pp. 559-566
-
-
Hwang, S.1
-
27
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
28
-
-
70449380104
-
Classification of Myoviridae bacteriophages using protein sequence similarity
-
Lavigne, R., et al. 2009. Classification of Myoviridae bacteriophages using protein sequence similarity. BMC Microbiol. 9:224.
-
(2009)
BMC Microbiol.
, vol.9
, pp. 224
-
-
Lavigne, R.1
-
29
-
-
32044445050
-
Bacteriophage therapy to reduce Campylobacter jejuni colonization of broiler chickens
-
Loc Carrillo, C. M., et al. 2005. Bacteriophage therapy to reduce Campylobacter jejuni colonization of broiler chickens. Appl. Environ. Microbiol. 71:6554-6563.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6554-6563
-
-
Loc Carrillo, C.M.1
-
30
-
-
34548508687
-
Free-range layer chickens as a source of Campylobacter bacteriophage
-
Loc Carrillo, C. M., P. L. Connerton, T. Pearson, and I. F. Connerton. 2007. Free-range layer chickens as a source of Campylobacter bacteriophage. Antonie Van Leeuwenhoek 92:275-284.
-
(2007)
Antonie Van Leeuwenhoek
, vol.92
, pp. 275-284
-
-
Loc Carrillo, C.M.1
Connerton, P.L.2
Pearson, T.3
Connerton, I.F.4
-
31
-
-
0030854739
-
tRNAscan-SE: a program for improved detection of tRNA genes in genomic sequence
-
Lowe, T. M., and S. R. Eddy. 1997. tRNAscan-SE: a program for improved detection of tRNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
32
-
-
17644410730
-
The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains
-
Mann, N. H., et al. 2005. The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains. J. Bacteriol. 187:3188-3200.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 3188-3200
-
-
Mann, N.H.1
-
33
-
-
0041386480
-
Complete genome sequence of the broad-hostrange vibriophage KVP40: comparative genomics of a T4-related bacteriophage.
-
Miller, E. S., et al. 2003. Complete genome sequence of the broad-hostrange vibriophage KVP40: comparative genomics of a T4-related bacteriophage. J.Bacteriol. 185:5220-5233.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 5220-5233
-
-
Miller, E.S.1
-
34
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller, E. S., et al. 2003. Bacteriophage T4 genome. Microbiol. Mol. Biol. Rev. 67:86-156.
-
(2003)
Microbiol. Mol. Biol. Rev.
, vol.67
, pp. 86-156
-
-
Miller, E.S.1
-
35
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., D. J. Pappin, D. M. Creasy, and J. S. Cottrell. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
36
-
-
33745905622
-
Plasticity of the gene functions for DNA replication in the T4-like phages
-
Petrov, V. M., et al. 2006. Plasticity of the gene functions for DNA replication in the T4-like phages. J. Mol. Biol. 361:46-68.
-
(2006)
J. Mol. Biol.
, vol.361
, pp. 46-68
-
-
Petrov, V.M.1
-
37
-
-
77958592580
-
Genomes of the T4-related bacteriophages as windows on microbial genome evolution
-
Petrov, V. M., S. Ratnayaka, J. M. Nolan, E. S. Miller, and J. D. Karam. 2010. Genomes of the T4-related bacteriophages as windows on microbial genome evolution. Virol. J. 7:292.
-
(2010)
Virol. J.
, vol.7
, pp. 292
-
-
Petrov, V.M.1
Ratnayaka, S.2
Nolan, J.M.3
Miller, E.S.4
Karam, J.D.5
-
38
-
-
3042855351
-
Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons. J
-
Poly, F., D. Threadgill, and A. Stintzi. 2004. Identification of Campylobacter jejuni ATCC 43431-specific genes by whole microbial genome comparisons. J. Bacteriol. 186:4781-4795.
-
(2004)
Bacteriol
, vol.186
, pp. 4781-4795
-
-
Poly, F.1
Threadgill, D.2
Stintzi, A.3
-
39
-
-
34147098884
-
Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine Synechococcus.
-
Pope, W. H., et al. 2007. Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a "horned" bacteriophage of marine Synechococcus. J. Mol. Biol. 368:966-981.
-
(2007)
J. Mol. Biol.
, vol.368
, pp. 966-981
-
-
Pope, W.H.1
-
40
-
-
0031975695
-
Characterisation of 16 Campylobacter jejuni and C. coli typing bacteriophages. J
-
Sails, A. D., D. R. Wareing, F. J. Bolton, A. J. Fox, and A. Curry. 1998. Characterisation of 16 Campylobacter jejuni and C. coli typing bacteriophages. J. Med. Microbiol. 47:123-128.
-
(1998)
Med. Microbiol.
, vol.47
, pp. 123-128
-
-
Sails, A.D.1
Wareing, D.R.2
Bolton, F.J.3
Fox, A.J.4
Curry, A.5
-
42
-
-
27744454457
-
SegH and Hef: two novel homing endonucleases whose genes replace the mobC and mobE genes in several T4-related phages
-
Sandegren, L., D. Nord, and B. M. Sjöberg. 2005. SegH and Hef: two novel homing endonucleases whose genes replace the mobC and mobE genes in several T4-related phages. Nucleic Acids Res. 33:6203-6213.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 6203-6213
-
-
Sandegren, L.1
Nord, D.2
Sjöberg, B.M.3
-
43
-
-
2542455477
-
Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns
-
Sandegren, L., and B. M. Sjöberg. 2004. Distribution, sequence homology, and homing of group I introns among T-even-like bacteriophages: evidence for recent transfer of old introns. J. Biol. Chem. 279:22218-22227.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 22218-22227
-
-
Sandegren, L.1
Sjöberg, B.M.2
-
44
-
-
0039596387
-
Campylobacter infection of commercial poultry
-
Shane, S. M. 2000. Campylobacter infection of commercial poultry. Rev. Sci. Tech. 19:376-395.
-
(2000)
Rev. Sci. Tech.
, vol.19
, pp. 376-395
-
-
Shane, S.M.1
-
46
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
-
Sullivan, M. B., M. L. Coleman, P. Weigele, F. Rohwer, and S. W. Chisholm. 2005. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3:e144.
-
(2005)
PLoS Biol.
, vol.3
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
47
-
-
78249280297
-
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
-
Sullivan, M. B., et al. 2010. Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments. Environ. Microbiol. 12:3035-3056.
-
(2010)
Environ. Microbiol.
, vol.12
, pp. 3035-3056
-
-
Sullivan, M.B.1
-
48
-
-
0035180718
-
Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages
-
Tétart, F., et al. 2001. Phylogeny of the major head and tail genes of the wide-ranging T4-type bacteriophages. J. Bacteriol. 183:358-366.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 358-366
-
-
Tétart, F.1
-
49
-
-
77950378520
-
Evidence for a lineage of virulent bacteriophages that target Campylobacter
-
Timms, A. R., et al. 2010. Evidence for a lineage of virulent bacteriophages that target Campylobacter. BMC Genomics 11:214.
-
(2010)
BMC Genomics
, vol.11
, pp. 214
-
-
Timms, A.R.1
-
50
-
-
23044471653
-
Phage therapy reduces Campylobacter jejuni colonization in broilers
-
Wagenaar, J. A., M. A. van Bergen, M. A. Mueller, T. M. Wassenaar, and R.M. Carlton. 2005. Phage therapy reduces Campylobacter jejuni colonization in broilers. Vet. Microbiol. 109:275-283.
-
(2005)
Vet. Microbiol.
, vol.109
, pp. 275-283
-
-
Wagenaar, J.A.1
van Bergen, M.A.2
Mueller, M.A.3
Wassenaar, T.M.4
Carlton, R.M.5
-
51
-
-
34250170456
-
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
-
Weigele, P. R., et al. 2007. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ. Microbiol. 9:1675-1695.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1675-1695
-
-
Weigele, P.R.1
-
52
-
-
0014328849
-
The lattice spacing of crystalline catalase as an internal standard of length in electron microscopy
-
Wrigley, N. G. 1968. The lattice spacing of crystalline catalase as an internal standard of length in electron microscopy. J. Ultrastruct. Res. 24:454-464.
-
(1968)
J. Ultrastruct. Res.
, vol.24
, pp. 454-464
-
-
Wrigley, N.G.1
-
53
-
-
69449083852
-
The linear plasmid prophage Vp58.5 of Vibrio parahaemolyticus is closely related to the integrating phage VHML and constitutes a new incompatibility group of telomere phages
-
Zabala, B., J. A. Hammerl, R. T. Espejo, and S. Hertwig. 2009. The linear plasmid prophage Vp58.5 of Vibrio parahaemolyticus is closely related to the integrating phage VHML and constitutes a new incompatibility group of telomere phages. J. Virol. 83:9313-9320.
-
(2009)
J. Virol.
, vol.83
, pp. 9313-9320
-
-
Zabala, B.1
Hammerl, J.A.2
Espejo, R.T.3
Hertwig, S.4
-
54
-
-
36549031282
-
Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli
-
Zuber, S., et al. 2007. Genome analysis of phage JS98 defines a fourth major subgroup of T4-like phages in Escherichia coli. J. Bacteriol. 189:8206-8214.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8206-8214
-
-
Zuber, S.1
|