-
1
-
-
33846408740
-
5500 Phages examined in the electron microscope
-
Ackermann HW. 2007. 5500 Phages examined in the electron microscope. Arch Virol. 152:227-243.
-
(2007)
Arch Virol
, vol.152
, pp. 227-243
-
-
Ackermann, H.W.1
-
2
-
-
33751059692
-
The marine viromes of four oceanic regions
-
18 co-authors
-
Angly FE, Felts B, Breitbart M, et al. (18 co-authors). 2006. The marine viromes of four oceanic regions. PLoS Biol. 4:2121-2131.
-
(2006)
PLoS Biol
, vol.4
, pp. 2121-2131
-
-
Angly, F.E.1
Felts, B.2
Breitbart, M.3
-
3
-
-
23144452801
-
GeneMark: Web software for gene finding in prokaryotes, eukaryotes and viruses
-
Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-W454.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Besemer, J.1
Borodovsky, M.2
-
4
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart M, Salamon P, Andresen B, Mahaffey JM, Segall AM, Mead D, Azam F, Rohwer F. 2002. Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci USA. 99:14250-14255.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
Salamon, P.2
Andresen, B.3
Mahaffey, J.M.4
Segall, A.M.5
Mead, D.6
Azam, F.7
Rohwer, F.8
-
5
-
-
0036255283
-
Genomic sequence and evolution of marine cyanophage P60: A new insight on lytic and lysogenic phages
-
Chen F, Lu JR. 2002. Genomic sequence and evolution of marine cyanophage P60: a new insight on lytic and lysogenic phages. Appl Environ Microbiol. 68:2589-2594.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 2589-2594
-
-
Chen, F.1
Lu, J.R.2
-
6
-
-
34247602006
-
Modular architecture of the T4 phage superfamily: A conserved core genome and a plastic periphery
-
Comeau AM, Bertrand C, Letarov A, Tétart F, Krisch HM. 2007. Modular architecture of the T4 phage superfamily: a conserved core genome and a plastic periphery. Virology 362:384-396.
-
(2007)
Virology
, vol.362
, pp. 384-396
-
-
Comeau, A.M.1
Bertrand, C.2
Letarov, A.3
Tétart, F.4
Krisch, H.M.5
-
7
-
-
49149117900
-
Exploring the prokaryotic virosphere
-
Comeau AM, Hatfull GF, Krisch HM, Lindell D, Mann NH, Prangishvili D. 2008. Exploring the prokaryotic virosphere. Res Microbiol. 159:306-313.
-
(2008)
Res Microbiol
, vol.159
, pp. 306-313
-
-
Comeau, A.M.1
Hatfull, G.F.2
Krisch, H.M.3
Lindell, D.4
Mann, N.H.5
Prangishvili, D.6
-
8
-
-
22544470014
-
War is peace-dispatches from the bacterial and phage killing fields
-
Comeau AM, Krisch HM. 2005. War is peace-dispatches from the bacterial and phage killing fields. Curr Opin Microbiol. 8:488-494.
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 488-494
-
-
Comeau, A.M.1
Krisch, H.M.2
-
9
-
-
45849096012
-
The capsid of the T4 phage superfamily: The evolution, diversity and structure of some of the most prevalent proteins in the biosphere
-
Comeau AM, Krisch HM. 2008. The capsid of the T4 phage superfamily: the evolution, diversity and structure of some of the most prevalent proteins in the biosphere. Mol Biol Evol. 25:1321-1332.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1321-1332
-
-
Comeau, A.M.1
Krisch, H.M.2
-
10
-
-
40749128501
-
Phage-Antibiotic Synergy (PAS): B-lactam and quinolone antibiotics stimulate virulent phage growth
-
Comeau AM, Tétart F, Trojet SN, Prère M-F, Krisch HM. 2007. Phage-Antibiotic Synergy (PAS): b-lactam and quinolone antibiotics stimulate virulent phage growth. PLoS One. 2:e799.
-
(2007)
PLoS One
, vol.2
-
-
Comeau, A.M.1
Tétart, F.2
Trojet, S.N.3
Prère, M.-F.4
Krisch, H.M.5
-
11
-
-
2342472596
-
Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget
-
Dorigo U, Jacquet S, Humbert JF. 2004. Cyanophage diversity, inferred from g20 gene analyses, in the largest natural lake in France, Lake Bourget. Appl Environ Microbiol. 70:1017-1022.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1017-1022
-
-
Dorigo, U.1
Jacquet, S.2
Humbert, J.F.3
-
12
-
-
33748165572
-
A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes
-
Filée J, Bapteste E, Susko E, Krisch HM. 2006. A selective barrier to horizontal gene transfer in the T4-type bacteriophages that has preserved a core genome with the viral replication and structural genes. Mol Biol Evol. 23:1688-1696.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1688-1696
-
-
Filée, J.1
Bapteste, E.2
Susko, E.3
Krisch, H.M.4
-
13
-
-
0036107982
-
Evolution of DNA polymerase families: Evidences for multiple gene exchange between cellular and viral proteins
-
Filée J, Forterre P, Sen-Lin T, Laurent J. 2002. Evolution of DNA polymerase families: evidences for multiple gene exchange between cellular and viral proteins. J Mol Evol. 54:763-773.
-
(2002)
J Mol Evol
, vol.54
, pp. 763-773
-
-
Filée, J.1
Forterre, P.2
Sen-Lin, T.3
Laurent, J.4
-
14
-
-
24644448794
-
Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere
-
Filée J, Tétart F, Suttle CA, Krisch HM. 2005. Marine T4-type bacteriophages, a ubiquitous component of the dark matter of the biosphere. Proc Natl Acad Sci USA. 102:12471-12476.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12471-12476
-
-
Filée, J.1
Tétart, F.2
Suttle, C.A.3
Krisch, H.M.4
-
15
-
-
0001208410
-
An electron microscopic study of bacteriophages from marine waters
-
Frank H, Moebus K. 1987. An electron microscopic study of bacteriophages from marine waters. Helgolander Meeresunters. 41:385-414.
-
(1987)
Helgolander Meeresunters
, vol.41
, pp. 385-414
-
-
Frank, H.1
Moebus, K.2
-
16
-
-
0031776161
-
Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques
-
Fuller NJ, Wilson WH, Joint IR, Mann NH. 1998. Occurrence of a sequence in marine cyanophages similar to that of T4 g20 and its application to PCR-based detection and quantification techniques. Appl Environ Microbiol. 64:2051-2060.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 2051-2060
-
-
Fuller, N.J.1
Wilson, W.H.2
Joint, I.R.3
Mann, N.H.4
-
17
-
-
10344227692
-
Metagenomics: Application of genomics to uncultured microorganisms
-
Handelsman J. 2004. Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev. 68:669-685.
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 669-685
-
-
Handelsman, J.1
-
18
-
-
0038340041
-
The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment
-
Hardies SC, Comeau AM, Serwer P, Suttle CA. 2003. The complete sequence of marine bacteriophage VpV262 infecting Vibrio parahaemolyticus indicates that an ancestral component of a T7 viral supergroup is widespread in the marine environment. Virology 310:359-371.
-
(2003)
Virology
, vol.310
, pp. 359-371
-
-
Hardies, S.C.1
Comeau, A.M.2
Serwer, P.3
Suttle, C.A.4
-
19
-
-
77249114108
-
Comparative genomic analysis of 60 mycobacteriophage genomes: Genome clustering, gene acquisition, and gene size
-
(27 co-authors)
-
Hatfull G, Jacobs-Sera D, Lawrence JG, et al. (27 co-authors). 2010. Comparative genomic analysis of 60 mycobacteriophage genomes: genome clustering, gene acquisition, and gene size. J Mol Biol. 397:119-143.
-
(2010)
J Mol Biol.
, vol.397
, pp. 119-143
-
-
Hatfull, G.1
Jacobs-Sera, D.2
Lawrence, J.G.3
-
20
-
-
2942582577
-
Genome analysis of marine photosynthetic microbes and their global role
-
Hess WR. 2004. Genome analysis of marine photosynthetic microbes and their global role. Curr Opin Biotechnol. 15:191-198.
-
(2004)
Curr Opin Biotechnol
, vol.15
, pp. 191-198
-
-
Hess, W.R.1
-
21
-
-
0036857358
-
QuickTree: Building huge Neighbour-Joining trees of protein sequences
-
Howe K, Bateman A, Durbin R. 2002. QuickTree: building huge Neighbour-Joining trees of protein sequences. Bioinformatics 18:1546-1547.
-
(2002)
Bioinformatics
, vol.18
, pp. 1546-1547
-
-
Howe, K.1
Bateman, A.2
Durbin, R.3
-
22
-
-
33947135345
-
Molecular characterization of T4-type bacteriophages in a rice field
-
DOI 10.1111/j.1462-2920.2006.01207.x
-
Jia ZJ, Ishihara R, Nakajima Y, Asakawa S, Kimura M. 2007. Molecular characterization of T4-type bacteriophages in a rice field. Environ Microbiol. 9:1091-1096. (Pubitemid 46397084)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.4
, pp. 1091-1096
-
-
Jia, Z.1
Ishihara, R.2
Nakajima, Y.3
Asakawa, S.4
Kimura, M.5
-
24
-
-
57349141505
-
A bioinformatician's guide to metagenomics
-
Kunin V, Copeland A, Lapidus A, Mavromatis K, Hugenholtz P. 2008. A bioinformatician's guide to metagenomics. Microbiol Mol Biol Rev. 72:557-578.
-
(2008)
Microbiol Mol Biol Rev
, vol.72
, pp. 557-578
-
-
Kunin, V.1
Copeland, A.2
Lapidus, A.3
Mavromatis, K.4
Hugenholtz, P.5
-
25
-
-
0345256391
-
Structure and morphogenesis of bacte-riophage T4
-
Leiman PG, Kanamaru S, Mesyanzhinov VV, Arisaka F, Rossmann MG. 2003. Structure and morphogenesis of bacte-riophage T4. Cell Mol Life Sci. 60:2356-2370.
-
(2003)
Cell Mol Life Sci
, vol.60
, pp. 2356-2370
-
-
Leiman, P.G.1
Kanamaru, S.2
Mesyanzhinov, V.V.3
Arisaka, F.4
Rossmann, M.G.5
-
26
-
-
17644410730
-
The genome of S-PM2, a "photo-synthetic" T4-type bacteriophage that infects marine Synecho-coccus strains
-
Mann NH, Clokie MRJ, Millard A, Cook A, Wilson WH, Wheatley PJ, Letarov A, Krisch HM. 2005. The genome of S-PM2, a "photo-synthetic" T4-type bacteriophage that infects marine Synecho-coccus strains. J Bacteriol. 187:3188-3200.
-
(2005)
J Bacteriol
, vol.187
, pp. 3188-3200
-
-
Mann, N.H.1
Mrj, C.2
Millard, A.3
Cook, A.4
Wilson, W.H.5
Wheatley, P.J.6
Letarov, A.7
Krisch, H.M.8
-
27
-
-
0041736065
-
Marine ecosystems: Bacterial photosynthesis genes in a virus
-
Mann NH, Cook A, Millard A, Bailey S, Clokie M. 2003. Marine ecosystems: bacterial photosynthesis genes in a virus. Nature 424:741.
-
(2003)
Nature
, vol.424
, pp. 741
-
-
Mann, N.H.1
Cook, A.2
Millard, A.3
Bailey, S.4
Clokie, M.5
-
28
-
-
0041386480
-
Complete genome sequence of the broad-host-range vibrio-phage KVP40: Comparative genomics of a T4-related bacterio-phage
-
Miller ES, Heidelberg JF, Eisen JA, et al. (13 co-authors). 2003. Complete genome sequence of the broad-host-range vibrio-phage KVP40: comparative genomics of a T4-related bacterio-phage. J Bacteriol. 185:5220-5233.
-
(2003)
J Bacteriol
, vol.185
, pp. 5220-5233
-
-
Miller, E.S.1
Heidelberg, J.F.2
Eisen, J.A.3
-
29
-
-
0037335488
-
Bacteriophage T4 genome
-
Miller ES, Kutter E, Mosig G, Arisaka F, Kunisawa T, Ruger W. 2003. Bacteriophage T4 genome. Microbiol Mol Biol Rev. 67:86-156.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 86-156
-
-
Miller, E.S.1
Kutter, E.2
Mosig, G.3
Arisaka, F.4
Kunisawa, T.5
Ruger, W.6
-
30
-
-
0033009854
-
Prochlorococcus, a marine photosynthetic prokaryote of global significance
-
Partensky F, Hess WR, Vaulot D. 1999. Prochlorococcus, a marine photosynthetic prokaryote of global significance. Microbiol Mol Biol Rev. 63:106-127.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 106-127
-
-
Partensky, F.1
Hess, W.R.2
Vaulot, D.3
-
31
-
-
0034111671
-
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages
-
Rohwer F, Segall A, Steward G, Seguritan V, Breitbart M, Wolven F, Azam F. 2000. The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages. Limnol Oceanogr. 45:408-418.
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 408-418
-
-
Rohwer, F.1
Segall, A.2
Steward, G.3
Seguritan, V.4
Breitbart, M.5
Wolven, F.6
Azam, F.7
-
32
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through eastern tropical Pacific
-
Rusch DB, Halpern AL, Sutton G, et al. (40 co-authors). 2007. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5:398-431.
-
(2007)
PLoS Biol
, vol.5
, pp. 398-431
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
-
33
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. 2003. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res. 13:2498-2504.
-
(2003)
Genome Res
, vol.13
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
34
-
-
70249108768
-
Photosystem i gene cassettes are present in marine virus genomes
-
Sharon I, Alperovitch A, Rohwer F, et al. (12 co-authors). 2009. Photosystem I gene cassettes are present in marine virus genomes. Nature 461:258-262.
-
(2009)
Nature
, vol.461
, pp. 258-262
-
-
Sharon, I.1
Alperovitch, A.2
Rohwer, F.3
-
35
-
-
12244252269
-
Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments
-
Short CM, Suttle CA. 2005. Nearly identical bacteriophage structural gene sequences are widely distributed in both marine and freshwater environments. Appl Environ Microbiol. 71:480-486.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 480-486
-
-
Short, C.M.1
Suttle, C.A.2
-
36
-
-
14644438364
-
Circular genome visualization and exploration using CGView
-
Stothard P, Wishart DS. 2005. Circular genome visualization and exploration using CGView. Bioinformatics 21:537-539.
-
(2005)
Bioinformatics
, vol.21
, pp. 537-539
-
-
Stothard, P.1
Wishart, D.S.2
-
37
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
-
Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW. 2005. Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3:790-806.
-
(2005)
PLoS Biol
, vol.3
, pp. 790-806
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
38
-
-
34548792911
-
Marine viruses-major players in the global ecosystem
-
Suttle CA. 2007. Marine viruses-major players in the global ecosystem. Nature Rev Microbiol. 5:801-812.
-
(2007)
Nature Rev Microbiol
, vol.5
, pp. 801-812
-
-
Suttle, C.A.1
-
39
-
-
0027968068
-
CLUSTAL-W-improv-ing the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL-W-improv-ing the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
40
-
-
34250170456
-
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
-
Weigele PR, Pope WH, Pedulla ML, Houtz JM, Smith AL, Conway JF, King J, Hatfull GF, Lawrence JG, Hendrix RW. 2007. Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol. 9: 1675-1695.
-
(2007)
Environ Microbiol
, vol.9
, pp. 1675-1695
-
-
Weigele, P.R.1
Pope, W.H.2
Pedulla, M.L.3
Houtz, J.M.4
Smith, A.L.5
Conway, J.F.6
King, J.7
Hatfull, G.F.8
Lawrence, J.G.9
Hendrix, R.W.10
-
41
-
-
44849140662
-
The Sorcerer II Global Ocean Sampling Expedition: Metagenomic characterization of viruses within aquatic microbial samples
-
Williamson SJ, Rusch DB, Yooseph S, et al. (12 co-authors). 2008. The Sorcerer II Global Ocean Sampling Expedition: metagenomic characterization of viruses within aquatic microbial samples. PLoS One. 3:e1456.
-
(2008)
PLoS One
, vol.3
-
-
Williamson, S.J.1
Rusch, D.B.2
Yooseph, S.3
-
42
-
-
22544481110
-
Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates
-
Zeidner G, Bielawski JP, Shmoish M, Scanlan DJ, Sabehi G, Béjà O. 2005. Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates. Environ Microbiol. 7:1505-1513.
-
(2005)
Environ Microbiol
, vol.7
, pp. 1505-1513
-
-
Zeidner, G.1
Bielawski, J.P.2
Shmoish, M.3
Scanlan, D.J.4
Sabehi, G.5
Béjà, O.6
-
43
-
-
0036211846
-
Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20
-
Zhong Y, Chen F, Wilhelm SW, Poorvin L, Hodson RE. 2002. Phylogenetic diversity of marine cyanophage isolates and natural virus communities as revealed by sequences of viral capsid assembly protein gene g20. Appl Environ Microbiol. 68: 1576-1584.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 1576-1584
-
-
Zhong, Y.1
Chen, F.2
Wilhelm, S.W.3
Poorvin, L.4
Hodson, R.E.5
|