-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0037255848
-
Association of a bacteriophage with virulence in Vibrio harveyi
-
Austin, B., A. C. Pride, and G. A. Rhodie. 2003. Association of a bacteriophage with virulence in Vibrio harveyi. J. Fish Dis. 26:55-58.
-
(2003)
J. Fish Dis.
, vol.26
, pp. 55-58
-
-
Austin, B.1
Pride, A.C.2
Rhodie, G.A.3
-
3
-
-
20344382957
-
Here a virus, there a virus, everywhere the same virus?
-
Breitbart, M., and F. Rohwer. 2005. Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13:278-284.
-
(2005)
Trends Microbiol.
, vol.13
, pp. 278-284
-
-
Breitbart, M.1
Rohwer, F.2
-
4
-
-
0027217835
-
The translational termination signal database
-
Brown, C. M., M. E. Dalphin, P. A. Stockwell, and W. P. Tate. 1993. The translational termination signal database. Nucleic Acids Res. 21:3119-3123.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3119-3123
-
-
Brown, C.M.1
Dalphin, M.E.2
Stockwell, P.A.3
Tate, W.P.4
-
5
-
-
34047109107
-
Vibrio parahaemolyticus O3:K6 epidemic diarrhea, Chile, 2005
-
Cabello, F. C., R. T. Espejo, M. C. Hernandez, M. L. Rioseco, J. Ulloa, and J. A. Vergara. 2007. Vibrio parahaemolyticus O3:K6 epidemic diarrhea, Chile, 2005. Emerg. Infect. Dis. 13:655-656.
-
(2007)
Emerg. Infect. Dis.
, vol.13
, pp. 655-656
-
-
Cabello, F.C.1
Espejo, R.T.2
Hernandez, M.C.3
Rioseco, M.L.4
Ulloa, J.5
Vergara, J.A.6
-
6
-
-
1442321281
-
The ΦKO2 linear plasmid prophage of Klebsiella oxytoca
-
Casjens, S. R., E. B. Gilcrease, W. M. Huang, K. L. Bunny, M. L. Pedulla, M. E. Ford, J. M. Houtz, G. F. Hatfull, and R. W. Hendrix. 2004. The ΦKO2 linear plasmid prophage of Klebsiella oxytoca. J. Bacteriol. 186:1818-1832.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 1818-1832
-
-
Casjens, S.R.1
Gilcrease, E.B.2
Huang, W.M.3
Bunny, K.L.4
Pedulla, M.L.5
Ford, M.E.6
Houtz, J.M.7
Hatfull, G.F.8
Hendrix, R.W.9
-
7
-
-
0020058459
-
Construction and characterization of new cloning vehicles. VI. Plasmid pBR329, a new derivative of pBR328 lacking the 482-base-pair inverted duplication
-
Covarrubias, L., and F. Bolivar. 1982. Construction and characterization of new cloning vehicles. VI. Plasmid pBR329, a new derivative of pBR328 lacking the 482-base-pair inverted duplication. Gene 17:79-89.
-
(1982)
Gene
, vol.17
, pp. 79-89
-
-
Covarrubias, L.1
Bolivar, F.2
-
8
-
-
0034608949
-
The protelomerase of temperate Escherichia coli phage N15 has cleaving-joining activity
-
Deneke, J., G. Ziegelin, R. Lurz, and E. Lanka. 2000. The protelomerase of temperate Escherichia coli phage N15 has cleaving-joining activity. Proc. Natl. Acad. Sci. USA 97:7721-7726.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 7721-7726
-
-
Deneke, J.1
Ziegelin, G.2
Lurz, R.3
Lanka, E.4
-
9
-
-
0037155871
-
Phage N15 telomere resolution. Target requirements for recognition and processing by the protelomerase
-
Deneke, J., G. Ziegelin, R. Lurz, and E. Lanka. 2002. Phage N15 telomere resolution. Target requirements for recognition and processing by the protelomerase. J. Biol. Chem. 277:10410-10419.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 10410-10419
-
-
Deneke, J.1
Ziegelin, G.2
Lurz, R.3
Lanka, E.4
-
10
-
-
0034604382
-
Prediction of transcription terminators in bacterial genomes
-
Ermolaeva, M. D., H. G. Khalak, O. White, H. O. Smith, and S. L. Salzberg. 2000. Prediction of transcription terminators in bacterial genomes. J. Mol. Biol. 301:27-33.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 27-33
-
-
Ermolaeva, M.D.1
Khalak, H.G.2
White, O.3
Smith, H.O.4
Salzberg, S.L.5
-
11
-
-
0030816550
-
The integrase family of tyrosine recombinases: Evolution of a conserved active site domain
-
DOI 10.1093/nar/25.18.3605
-
Esposito, D., and J. J. Scocca. 1997. The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucleic Acids Res. 25:3605-3614. (Pubitemid 27390178)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.18
, pp. 3605-3614
-
-
Esposito, D.1
Scocca, J.J.2
-
12
-
-
34347216686
-
Vibrio parahaemolyticus strains isolated during investigation of the summer 2006 seafood related diarrhea outbreaks in two regions of Chile
-
Fuenzalida, L., L. Armijo, B. Zabala, C. Hernandez, M. L. Rioseco, C. Riquelme, and R. T. Espejo. 2007. Vibrio parahaemolyticus strains isolated during investigation of the summer 2006 seafood related diarrhea outbreaks in two regions of Chile. Int. J. Food Microbiol. 117:270-275.
-
(2007)
Int. J. Food Microbiol.
, vol.117
, pp. 270-275
-
-
Fuenzalida, L.1
Armijo, L.2
Zabala, B.3
Hernandez, C.4
Rioseco, M.L.5
Riquelme, C.6
Espejo, R.T.7
-
13
-
-
33644839741
-
Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhoea in southern Chile
-
Fuenzalida, L., C. Hernandez, J. Toro, M. L. Rioseco, J. Romero, and R. T. Espejo. 2006. Vibrio parahaemolyticus in shellfish and clinical samples during two large epidemics of diarrhoea in southern Chile. Environ. Microbiol. 8:675-683.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 675-683
-
-
Fuenzalida, L.1
Hernandez, C.2
Toro, J.3
Rioseco, M.L.4
Romero, J.5
Espejo, R.T.6
-
14
-
-
0024636392
-
Conjugative transfer of promiscuous IncP plasmids: Interaction of plasmid-encoded products with the transfer origin
-
Fuerste, J. P., W. Pansegrau, G. Ziegelin, M. Kroeger, and E. Lanka. 1989. Conjugative transfer of promiscuous IncP plasmids: interaction of plasmid-encoded products with the transfer origin. Proc. Natl. Acad. Sci. USA 86: 1771-1775.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 1771-1775
-
-
Fuerste, J.P.1
Pansegrau, W.2
Ziegelin, G.3
Kroeger, M.4
Lanka, E.5
-
15
-
-
11844276600
-
Vibrio parahaemolyticus diarrhea, Chile, 1998 and 2004
-
Gonzalez-Escalona, N., V. Cachicas, C. Acevedo, M. L. Rioseco, J. A. Vergara, F. Cabello, J. Romero, and R. T. Espejo. 2005. Vibrio parahaemolyticus diarrhea, Chile, 1998 and 2004. Emerg. Infect. Dis. 11:129-131.
-
(2005)
Emerg. Infect. Dis.
, vol.11
, pp. 129-131
-
-
Gonzalez-Escalona, N.1
Cachicas, V.2
Acevedo, C.3
Rioseco, M.L.4
Vergara, J.A.5
Cabello, F.6
Romero, J.7
Espejo, R.T.8
-
16
-
-
1542397137
-
Phage integrases: Biology and applications
-
Groth, A. C., and M. P. Calos. 2004. Phage integrases: biology and applications. J. Mol. Biol. 335:667-678.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 667-678
-
-
Groth, A.C.1
Calos, M.P.2
-
17
-
-
0033428970
-
Helicase motifs: The engine that powers DNA unwinding
-
Hall, M. C., and S. W. Matson. 1999. Helicase motifs: the engine that powers DNA unwinding. Mol. Microbiol. 34:867-877.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 867-877
-
-
Hall, M.C.1
Matson, S.W.2
-
18
-
-
0029198455
-
A simple and rapid method for transformation of Vibrio species by electroporation
-
Hamashima, H., M. Iwasaki, and T. Arai. 1995. A simple and rapid method for transformation of Vibrio species by electroporation. Methods Mol. Biol. 47:155-160.
-
(1995)
Methods Mol. Biol.
, vol.47
, pp. 155-160
-
-
Hamashima, H.1
Iwasaki, M.2
Arai, T.3
-
19
-
-
36549074646
-
Interplay between the temperate phages PY54 and N15, linear plasmid prophages with covalently closed ends
-
Hammerl, J. A., I. Klein, B. Appel, and S. Hertwig. 2007. Interplay between the temperate phages PY54 and N15, linear plasmid prophages with covalently closed ends. J. Bacteriol. 189:8366-8370.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8366-8370
-
-
Hammerl, J.A.1
Klein, I.2
Appel, B.3
Hertwig, S.4
-
20
-
-
0037849863
-
PY54, a linear plasmid prophage of Yersinia enterocolitica with covalently closed ends
-
Hertwig, S., I. Klein, R. Lurz, E. Lanka, and B. Appel. 2003. PY54, a linear plasmid prophage of Yersinia enterocolitica with covalently closed ends. Mol. Microbiol. 48:989-1003.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 989-1003
-
-
Hertwig, S.1
Klein, I.2
Lurz, R.3
Lanka, E.4
Appel, B.5
-
21
-
-
0043166251
-
Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54
-
Hertwig, S., I. Klein, V. Schmidt, S. Beck, J. A. Hammerl, and B. Appel. 2003. Sequence analysis of the genome of the temperate Yersinia enterocolitica phage PY54. J. Mol. Biol. 331:605-622.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 605-622
-
-
Hertwig, S.1
Klein, I.2
Schmidt, V.3
Beck, S.4
Hammerl, J.A.5
Appel, B.6
-
22
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
23
-
-
65549112863
-
Characterization of a new plasmid-like prophage in a pandemic Vibrio parahaemolyticus O3:K6 strain
-
Lan, S. F., C. H. Huang, C. H. Chang, W. C. Liao, I. H. Lin, W. N. Jian, Y. G. Wu, S. Y. Chen, and H. C. Wong. 2009. Characterization of a new plasmid-like prophage in a pandemic Vibrio parahaemolyticus O3:K6 strain. Appl. Environ. Microbiol. 75:2659-2667.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 2659-2667
-
-
Lan, S.F.1
Huang, C.H.2
Chang, C.H.3
Liao, W.C.4
Lin, I.H.5
Jian, W.N.6
Wu, Y.G.7
Chen, S.Y.8
Wong, H.C.9
-
24
-
-
40849126681
-
Reticulate representation of evolutionary and functional relationships between phage genomes
-
Lima-Mendez, G., J. van Helden, A. Toussaint, and R. Leplae. 2008. Reticulate representation of evolutionary and functional relationships between phage genomes. Mol. Biol. Evol. 25:762-777.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 762-777
-
-
Lima-Mendez, G.1
Van Helden, J.2
Toussaint, A.3
Leplae, R.4
-
25
-
-
0017616363
-
Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels
-
McDonell, M. W., M. N. Simon, and F. W. Studier. 1977. Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels. J. Mol. Biol. 110:119-146.
-
(1977)
J. Mol. Biol.
, vol.110
, pp. 119-146
-
-
McDonell, M.W.1
Simon, M.N.2
Studier, F.W.3
-
26
-
-
45749112180
-
The temperate marine phage ΦHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome
-
Mobberley, J. M., R. N. Authement, A. M. Segall, and J. H. Paul. 2008. The temperate marine phage ΦHAP-1 of Halomonas aquamarina possesses a linear plasmid-like prophage genome. J. Virol. 82:6618-6630.
-
(2008)
J. Virol.
, vol.82
, pp. 6618-6630
-
-
Mobberley, J.M.1
Authement, R.N.2
Segall, A.M.3
Paul, J.H.4
-
27
-
-
0037568075
-
Experimental bacteriophage-mediated virulence in strains of Vibrio harveyi
-
Munro, J., J. Oakey, E. Bromage, and L. Owens. 2003. Experimental bacteriophage-mediated virulence in strains of Vibrio harveyi. Dis. Aquat. Organ. 54:187-194.
-
(2003)
Dis. Aquat. Organ.
, vol.54
, pp. 187-194
-
-
Munro, J.1
Oakey, J.2
Bromage, E.3
Owens, L.4
-
28
-
-
0036443086
-
The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML
-
Oakey, H. J., B. R. Cullen, and L. Owens. 2002. The complete nucleotide sequence of the Vibrio harveyi bacteriophage VHML. J. Appl. Microbiol. 93:1089-1098.
-
(2002)
J. Appl. Microbiol.
, vol.93
, pp. 1089-1098
-
-
Oakey, H.J.1
Cullen, B.R.2
Owens, L.3
-
29
-
-
69449098293
-
A hypothetical model for VHML phage conversion of Vibrio harveyi
-
Oakey, H. J., B. R. Cullen, and L. Owens. 2005. A hypothetical model for VHML phage conversion of Vibrio harveyi. Dis. Asian Aquac. V:457-464.
-
(2005)
Dis. Asian Aquac.
, vol.V
, pp. 457-464
-
-
Oakey, H.J.1
Cullen, B.R.2
Owens, L.3
-
30
-
-
0033794660
-
A new bacteriophage, VHML, isolated from a toxin-producing strain of Vibrio harveyi in tropical Australia
-
Oakey, H. J., and L. Owens. 2000. A new bacteriophage, VHML, isolated from a toxin-producing strain of Vibrio harveyi in tropical Australia. J. Appl. Microbiol. 89:702-709.
-
(2000)
J. Appl. Microbiol.
, vol.89
, pp. 702-709
-
-
Oakey, H.J.1
Owens, L.2
-
31
-
-
34250687973
-
Vibrio harveyi: Pretty problems in paradise
-
F. L. Thompson, B. Austin, and J. Swings (ed.), ASM Press, Washington, DC
-
Owens, L., and N. Busico-Salcedo. 2006. Vibrio harveyi: pretty problems in paradise, p. 266-280. In F. L. Thompson, B. Austin, and J. Swings (ed.), The biology of the vibrios. ASM Press, Washington, DC.
-
(2006)
The Biology of the Vibrios
, pp. 266-280
-
-
Owens, L.1
Busico-Salcedo, N.2
-
32
-
-
44849088966
-
Prophages in marine bacteria: Dangerous molecular time bombs or the key to survival in the seas?
-
Paul, J. H. 2008. Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? ISME J. 2:579-589.
-
(2008)
ISME J.
, vol.2
, pp. 579-589
-
-
Paul, J.H.1
-
33
-
-
4944246694
-
The ability of two different Vibrio spp. bacteriophages to infect Vibrio harveyi, Vibrio cholerae and Vibrio mimicus
-
DOI 10.1111/j.1365-2672.2004.02362.x
-
Payne, M., J. Oakey, and L. Owens. 2004. The ability of two different Vibrio spp. bacteriophages to infect Vibrio harveyi, Vibrio cholerae and Vibrio mimicus. J. Appl. Microbiol. 97:663-672. (Pubitemid 39331572)
-
(2004)
Journal of Applied Microbiology
, vol.97
, Issue.4
, pp. 663-672
-
-
Payne, M.1
Oakey, J.2
Owens, L.3
-
34
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., D. J. Pappin, D. M. Creasy, and J. S. Cottrell. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
35
-
-
0345099615
-
Bidirectional replication from an internal ori site of the linear N15 plasmid prophage
-
Ravin, N. V., V. V. Kuprianov, E. B. Gilcrease, and S. R. Casjens. 2003. Bidirectional replication from an internal ori site of the linear N15 plasmid prophage. Nucleic Acids Res. 31:6552-6560.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6552-6560
-
-
Ravin, N.V.1
Kuprianov, V.V.2
Gilcrease, E.B.3
Casjens, S.R.4
-
36
-
-
0034716933
-
Genomic sequence and analysis of the atypical temperate bacteriophage N15
-
Ravin, V., N. Ravin, S. Casjens, M. E. Ford, G. F. Hatfull, and R. W. Hendrix. 2000. Genomic sequence and analysis of the atypical temperate bacteriophage N15. J. Mol. Biol. 299:53-73.
-
(2000)
J. Mol. Biol.
, vol.299
, pp. 53-73
-
-
Ravin, V.1
Ravin, N.2
Casjens, S.3
Ford, M.E.4
Hatfull, G.F.5
Hendrix, R.W.6
-
37
-
-
0032832751
-
The plasmid prophage N15: A linear DNA with covalently closed ends
-
Rybchin, V. N., and A. N. Svarchevsky. 1999. The plasmid prophage N15: a linear DNA with covalently closed ends. Mol. Microbiol. 33:895-903.
-
(1999)
Mol. Microbiol.
, vol.33
, pp. 895-903
-
-
Rybchin, V.N.1
Svarchevsky, A.N.2
-
38
-
-
0004136246
-
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(2001)
Molecular Cloning: A Laboratory Manual, 3rd Ed.
-
-
Sambrook, J.1
Russell, D.W.2
-
39
-
-
0024292372
-
Molecular substructure of a viral receptor-recognition protein. The gp17 tail-fiber of bacteriophage T7
-
Steven, A. C., B. L. Trus, J. V. Maizel, M. Unser, D. A. Parry, J. S. Wall, J. F. Hainfeld, and F. W. Studier. 1988. Molecular substructure of a viral receptor-recognition protein. The gp17 tail-fiber of bacteriophage T7. J. Mol. Biol. 200:351-365.
-
(1988)
J. Mol. Biol.
, vol.200
, pp. 351-365
-
-
Steven, A.C.1
Trus, B.L.2
Maizel, J.V.3
Unser, M.4
Parry, D.A.5
Wall, J.S.6
Hainfeld, J.F.7
Studier, F.W.8
-
40
-
-
33645130329
-
Changes to the phenotypic profile of Vibrio harveyi when infected with the Vibrio harveyi myovirus-like (VHML) bacteriophage
-
Vidgen, M., J. Carson, M. Higgins, and L. Owens. 2006. Changes to the phenotypic profile of Vibrio harveyi when infected with the Vibrio harveyi myovirus-like (VHML) bacteriophage. J. Appl. Microbiol. 100:481-487.
-
(2006)
J. Appl. Microbiol.
, vol.100
, pp. 481-487
-
-
Vidgen, M.1
Carson, J.2
Higgins, M.3
Owens, L.4
-
41
-
-
62149148823
-
Enhancement of UV light sensitivity of a Vibrio parahaemolyticus O3:K6 pandemic strain due to natural lysogenization by a telomeric phage
-
Zabala, B., K. Garcia, and R. T. Espejo. 2009. Enhancement of UV light sensitivity of a Vibrio parahaemolyticus O3:K6 pandemic strain due to natural lysogenization by a telomeric phage. Appl. Environ. Microbiol. 75:1697-1702.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 1697-1702
-
-
Zabala, B.1
Garcia, K.2
Espejo, R.T.3
-
42
-
-
18244406269
-
The repA gene of the linear Yersinia enterocolitica prophage PY54 functions as a circular minimal replicon in Escherichia coli
-
DOI 10.1128/JB.187.10.3445-3454.2005
-
Ziegelin, G., N. Tegtmeyer, R. Lurz, S. Hertwig, J. Hammerl, B. Appel, and E. Lanka. 2005. The repA gene of the linear Yersinia enterocolitica prophage PY54 functions as a circular minimal replicon in Escherichia coli. J. Bacteriol. 187:3445-3454. (Pubitemid 40628700)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.10
, pp. 3445-3454
-
-
Ziegelin, G.1
Tegtmeyer, N.2
Lurz, R.3
Hertwig, S.4
Hammerl, J.5
Appel, B.6
Lanka, E.7
|