-
1
-
-
0028711703
-
Control of mRNA processing and decay in prokaryotes
-
Alifano P., Bruni C.B., Carlomagno M.S. Control of mRNA processing and decay in prokaryotes. Genetica 1994, 94:157-172.
-
(1994)
Genetica
, vol.94
, pp. 157-172
-
-
Alifano, P.1
Bruni, C.B.2
Carlomagno, M.S.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997, 25:3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0036840895
-
Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers
-
(Erratum: Appl. Environ. Microbiol. 2003, 69, 3027)
-
Avrahami S., Conrad R., Braker G. Effect of soil ammonium concentration on N2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 2003, 68:5685-5692. (Erratum: Appl. Environ. Microbiol. 2003, 69, 3027).
-
(2003)
Appl. Environ. Microbiol.
, vol.68
, pp. 5685-5692
-
-
Avrahami, S.1
Conrad, R.2
Braker, G.3
-
4
-
-
0031687820
-
Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
-
Braker G., Fesefeldt A., Witzel K.P. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 1998, 64:3769-3775.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3769-3775
-
-
Braker, G.1
Fesefeldt, A.2
Witzel, K.P.3
-
5
-
-
0034016758
-
Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities
-
Braker G., Zhou J., Wu L., Devol A.H., Tiedje J.M. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities. Appl. Environ. Microbiol. 2000, 66:2096-2104.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2096-2104
-
-
Braker, G.1
Zhou, J.2
Wu, L.3
Devol, A.H.4
Tiedje, J.M.5
-
6
-
-
0037978972
-
Nitric oxide reductase (norB) genes from pure cultures and environmental samples
-
Braker G., Tiedje J.M. Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl. Environ. Microbiol. 2003, 69:3476-3483.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 3476-3483
-
-
Braker, G.1
Tiedje, J.M.2
-
7
-
-
77953176281
-
Influence of temperature on the composition and activity of denitrifying soil communities
-
Braker G., Schwarz J., Conrad R. Influence of temperature on the composition and activity of denitrifying soil communities. FEMS Microbiol. Ecol. 2010, 73:134-148.
-
(2010)
FEMS Microbiol. Ecol.
, vol.73
, pp. 134-148
-
-
Braker, G.1
Schwarz, J.2
Conrad, R.3
-
8
-
-
35948950775
-
Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifiers communities in soil
-
Bremer C., Braker G., Matthies D., Reuter A., Engels C., Conrad R. Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifiers communities in soil. Appl. Environ. Microbiol. 2007, 73:6876-6884.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 6876-6884
-
-
Bremer, C.1
Braker, G.2
Matthies, D.3
Reuter, A.4
Engels, C.5
Conrad, R.6
-
9
-
-
0033939308
-
The functional significance of denitrifier community composition in a terrestrial ecosystem
-
Cavigelli M.A., Robertson G.P. The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology 2000, 81:1402-1414.
-
(2000)
Ecology
, vol.81
, pp. 1402-1414
-
-
Cavigelli, M.A.1
Robertson, G.P.2
-
10
-
-
0025223555
-
Brief and vigorous N2O production by soil at spring thaw
-
Christensen S., Tiedje J.M. Brief and vigorous N2O production by soil at spring thaw. J. Soil Sci. 1990, 41:1-4.
-
(1990)
J. Soil Sci.
, vol.41
, pp. 1-4
-
-
Christensen, S.1
Tiedje, J.M.2
-
11
-
-
0029845048
-
Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO)
-
Conrad R. Soil microorganisms as controllers of atmospheric trace gases (H2, CO, CH4, OCS, N2O, and NO). Microbiol. Rev. 1996, 60:609-640.
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 609-640
-
-
Conrad, R.1
-
12
-
-
33645024488
-
Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate
-
Dambreville C., Hallet S., Nguyen C., Morvan T., Germon J.C., Philippot L. Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate. FEMS Microbiol. Ecol. 2006, 56:119-131.
-
(2006)
FEMS Microbiol. Ecol.
, vol.56
, pp. 119-131
-
-
Dambreville, C.1
Hallet, S.2
Nguyen, C.3
Morvan, T.4
Germon, J.C.5
Philippot, L.6
-
13
-
-
33846837621
-
Analysis of denitrification genes and comparison of nosZ, cnorB and 16S rDNA from culturable denitrifying bacteria in potato cropping systems
-
Dandie C.E., Miller M.N., Burton D.L., Zebarth B.J., Trevors J.T., Goyer C. Analysis of denitrification genes and comparison of nosZ, cnorB and 16S rDNA from culturable denitrifying bacteria in potato cropping systems. Syst. Appl. Microbiol. 2007, 30:128-138.
-
(2007)
Syst. Appl. Microbiol.
, vol.30
, pp. 128-138
-
-
Dandie, C.E.1
Miller, M.N.2
Burton, D.L.3
Zebarth, B.J.4
Trevors, J.T.5
Goyer, C.6
-
14
-
-
54449086033
-
Changes in bacterial denitrifier community abundance over time in an agricultural field and their relationship with denitrification activity
-
Dandie C.E., Burton D.L., Zebarth B.J., Henderson S.L., Trevors J.T., Goyer C. Changes in bacterial denitrifier community abundance over time in an agricultural field and their relationship with denitrification activity. Appl. Environ. Microbiol. 2008, 74:5997-6005.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 5997-6005
-
-
Dandie, C.E.1
Burton, D.L.2
Zebarth, B.J.3
Henderson, S.L.4
Trevors, J.T.5
Goyer, C.6
-
15
-
-
58149397922
-
Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach
-
Demanèche S., Philippot L., David M.M., Navarro E., Vogel T.M., Simonet P. Characterization of denitrification gene clusters of soil bacteria via a metagenomic approach. Appl. Environ. Microbiol. 2009, 75:534-537.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 534-537
-
-
Demanèche, S.1
Philippot, L.2
David, M.M.3
Navarro, E.4
Vogel, T.M.5
Simonet, P.6
-
16
-
-
68549140162
-
Novel denitrifying bacterium Ochrobactrum anthropi YD50.2 tolerates high levels of reactive nitrogen oxides
-
Doi Y., Takaya N., Takizawa N. Novel denitrifying bacterium Ochrobactrum anthropi YD50.2 tolerates high levels of reactive nitrogen oxides. Appl. Environ. Microbiol. 2009, 75:5186-5194.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 5186-5194
-
-
Doi, Y.1
Takaya, N.2
Takizawa, N.3
-
17
-
-
80052154145
-
Impact of the cropping systems and climate change on the soil carbon sink in a Mediterranean area
-
Ph.D. Thesis. University of Sassari, Italy.
-
Doro, L., 2009. Impact of the cropping systems and climate change on the soil carbon sink in a Mediterranean area. Ph.D. Thesis. University of Sassari, Italy.
-
(2009)
-
-
Doro, L.1
-
18
-
-
29144511306
-
Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization
-
Enwall K., Philippot L., Hallin S. Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization. Appl. Environ. Microbiol. 2005, 71:8335-8343.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8335-8343
-
-
Enwall, K.1
Philippot, L.2
Hallin, S.3
-
19
-
-
58149302711
-
Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil
-
Enwall K., Hallin S. Comparison of T-RFLP and DGGE techniques to assess denitrifier community composition in soil. Lett. Appl. Microbiol. 2009, 48:145-148.
-
(2009)
Lett. Appl. Microbiol.
, vol.48
, pp. 145-148
-
-
Enwall, K.1
Hallin, S.2
-
20
-
-
77950263969
-
Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management
-
Enwall K., Throbäck I.N., Stenberg M., Söderström M., Hallin S. Soil resources influence spatial patterns of denitrifying communities at scales compatible with land management. Appl. Environ. Microbiol. 2010, 76:2243-2250.
-
(2010)
Appl. Environ. Microbiol.
, vol.76
, pp. 2243-2250
-
-
Enwall, K.1
Throbäck, I.N.2
Stenberg, M.3
Söderström, M.4
Hallin, S.5
-
21
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer N., Jackson R.B. The diversity and biogeography of soil bacterial communities. Proc. Natl. Acad. Sci. U. S. A. 2006, 103:626-631.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
22
-
-
18744374590
-
Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns
-
Fromin N., Hamelin J., Tarnawski S., Roesti D., Jourdain-Miserez K., Forestier N., Teyssier-Cuvelle S., Gillet F., Aragno M., Rossi P. Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ. Microbiol. 2002, 4:634-643.
-
(2002)
Environ. Microbiol.
, vol.4
, pp. 634-643
-
-
Fromin, N.1
Hamelin, J.2
Tarnawski, S.3
Roesti, D.4
Jourdain-Miserez, K.5
Forestier, N.6
Teyssier-Cuvelle, S.7
Gillet, F.8
Aragno, M.9
Rossi, P.10
-
23
-
-
0037338334
-
Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils
-
Girvan M.S., Bullimore J., Pretty J.N., Osborn A.M., Ball A.S. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Appl. Environ. Microbiol. 2003, 69:1800-1809.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1800-1809
-
-
Girvan, M.S.1
Bullimore, J.2
Pretty, J.N.3
Osborn, A.M.4
Ball, A.S.5
-
24
-
-
51549115421
-
Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment
-
Habekost M., Eisenhauer N., Scheu S., Steinbeiss S., Weigelt A., Gleixner G. Seasonal changes in the soil microbial community in a grassland plant diversity gradient four years after establishment. Soil Biol. Biochem. 2008, 40:2588-2595.
-
(2008)
Soil Biol. Biochem.
, vol.40
, pp. 2588-2595
-
-
Habekost, M.1
Eisenhauer, N.2
Scheu, S.3
Steinbeiss, S.4
Weigelt, A.5
Gleixner, G.6
-
25
-
-
80052139814
-
-
PAlaeontological STatistics, ver. 1.9 Users 501 Manual,
-
Hammer, Ø., Harper, D.A.T., Ryan, P.D., 2009. PAlaeontological STatistics, ver. 1.9 Users 501 Manual, 92 pp. http://folk.uio.no/ohammer/past/past.pdf.
-
(2009)
, pp. 92
-
-
Hammer, O.1
Harper, D.A.T.2
Ryan, D.3
-
26
-
-
33747335398
-
Quantitative detection of the nosZ gene encoding the nitrous oxide reductase and comparison of the abundance of 16S rRNA, narG, nirK and nosZ genes in soils
-
Henry S., Bru D., Stres B., Hallet S., Philippot L. Quantitative detection of the nosZ gene encoding the nitrous oxide reductase and comparison of the abundance of 16S rRNA, narG, nirK and nosZ genes in soils. Appl. Environ. Microbiol. 2006, 72:5181-5189.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5181-5189
-
-
Henry, S.1
Bru, D.2
Stres, B.3
Hallet, S.4
Philippot, L.5
-
27
-
-
52949102510
-
Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates
-
Henry S., Texier S., Hallet S., Bru D., Dambreville C., Cheneby D., Bizouard F., Germon J.C., Philippot L. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates. Environ. Microbiol. 2008, 10:3082-3092.
-
(2008)
Environ. Microbiol.
, vol.10
, pp. 3082-3092
-
-
Henry, S.1
Texier, S.2
Hallet, S.3
Bru, D.4
Dambreville, C.5
Cheneby, D.6
Bizouard, F.7
Germon, J.C.8
Philippot, L.9
-
28
-
-
33749411590
-
The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers
-
Heylen K., Gevers D., Vanparys B., Wittebolle L., Geets J., Boon N. The incidence of nirS and nirK and their genetic heterogeneity in cultivated denitrifiers. Environ. Microbiol. 2006, 8:2012-2021.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 2012-2021
-
-
Heylen, K.1
Gevers, D.2
Vanparys, B.3
Wittebolle, L.4
Geets, J.5
Boon, N.6
-
29
-
-
33947123124
-
Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers
-
Heylen K., Vanparys B., Gevers D., Wittebolle L., Boon N., De Vos P. Nitric oxide reductase (norB) gene sequence analysis reveals discrepancies with nitrite reductase (nir) gene phylogeny in cultivated denitrifiers. Environ. Microbiol. 2007, 9:1072-1077.
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1072-1077
-
-
Heylen, K.1
Vanparys, B.2
Gevers, D.3
Wittebolle, L.4
Boon, N.5
De Vos, P.6
-
30
-
-
0343962990
-
Comparison of denitrifying communities in organic soils: kinetics of NO3- and N2O reduction
-
Holtan-Hartwig L., Dörsch P., Bakken L.R. Comparison of denitrifying communities in organic soils: kinetics of NO3- and N2O reduction. Soil Biol. Biochem. 2000, 32:833-843.
-
(2000)
Soil Biol. Biochem.
, vol.32
, pp. 833-843
-
-
Holtan-Hartwig, L.1
Dörsch, P.2
Bakken, L.R.3
-
31
-
-
49749112308
-
Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification
-
Jones C.M., Stres B., Rosenquist M., Hallin S. Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. Mol. Biol. Evol. 2008, 25:1955-1966.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1955-1966
-
-
Jones, C.M.1
Stres, B.2
Rosenquist, M.3
Hallin, S.4
-
32
-
-
0000732090
-
Evolution of protein molecules
-
Academic Press, New York, H.H. Munro (Ed.)
-
Jukes T.H., Cantor C.R. Evolution of protein molecules. Mammalian Protein Metabolism 1969, 21-132. Academic Press, New York. H.H. Munro (Ed.).
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
33
-
-
65449138910
-
Denitrification activity and relevant bacteria revealed by nitrite reductase gene fragments in soil of temperate mixed forest
-
Katsuyama C., Kondo N., Suwa Y., Yamagishi T., Itoh M., Ohte N. Denitrification activity and relevant bacteria revealed by nitrite reductase gene fragments in soil of temperate mixed forest. Microbes Environ. 2008, 23:337-345.
-
(2008)
Microbes Environ.
, vol.23
, pp. 337-345
-
-
Katsuyama, C.1
Kondo, N.2
Suwa, Y.3
Yamagishi, T.4
Itoh, M.5
Ohte, N.6
-
34
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
35
-
-
77951959969
-
Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH
-
Liu B., Mørkved P.T., Frostegård A., Bakken L.R. Denitrification gene pools, transcription and kinetics of NO, N2O and N2 production as affected by soil pH. FEMS Microbiol. Ecol. 2010, 72:407-417.
-
(2010)
FEMS Microbiol. Ecol.
, vol.72
, pp. 407-417
-
-
Liu, B.1
Mørkved, P.T.2
Frostegård, A.3
Bakken, L.R.4
-
36
-
-
34548246447
-
Diversity of nitrite reductase genes in " Candidatus Accumulibacter phosphates" -dominated cultures enriched by flow-cytometric sorting
-
Miyauchi R., Oki K., Aoi Y., Tsuneda S. Diversity of nitrite reductase genes in " Candidatus Accumulibacter phosphates" -dominated cultures enriched by flow-cytometric sorting. Appl. Environ. Microbiol. 2007, 73:5331-5337.
-
(2007)
Appl. Environ. Microbiol.
, vol.73
, pp. 5331-5337
-
-
Miyauchi, R.1
Oki, K.2
Aoi, Y.3
Tsuneda, S.4
-
37
-
-
53849137362
-
Construction of a consortium comprising ammonia-oxidizing bacteria and denitrifying bacteria isolated from marine sediment
-
Nakano M., Shimizu Y., Okumura H., Sugahara I., Maeda H. Construction of a consortium comprising ammonia-oxidizing bacteria and denitrifying bacteria isolated from marine sediment. Biocontrol Sci. 2008, 13:73-89.
-
(2008)
Biocontrol Sci.
, vol.13
, pp. 73-89
-
-
Nakano, M.1
Shimizu, Y.2
Okumura, H.3
Sugahara, I.4
Maeda, H.5
-
38
-
-
0042431433
-
Microbial diversity and soil functions
-
Nannipieri P., Ascher J., Ceccherini M.T., Landi L., Pietramellara G., Renella G. Microbial diversity and soil functions. Eur. J. Soil Sci. 2003, 54:655-670.
-
(2003)
Eur. J. Soil Sci.
, vol.54
, pp. 655-670
-
-
Nannipieri, P.1
Ascher, J.2
Ceccherini, M.T.3
Landi, L.4
Pietramellara, G.5
Renella, G.6
-
39
-
-
0027229994
-
Cloning and characterization of a nitrite reductase gene from Alcaligenes faecalis and its expression in Escherichia coli
-
Nishiyama M., Suzuki J., Kukimoto M., Ohnuki T., Horinouchi S., Beppu T. Cloning and characterization of a nitrite reductase gene from Alcaligenes faecalis and its expression in Escherichia coli. J. Gen. Microbiol. 1993, 139:725-733.
-
(1993)
J. Gen. Microbiol.
, vol.139
, pp. 725-733
-
-
Nishiyama, M.1
Suzuki, J.2
Kukimoto, M.3
Ohnuki, T.4
Horinouchi, S.5
Beppu, T.6
-
40
-
-
0036793715
-
Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA
-
Nogales B., Timmis K.N., Nedwell D.B., Osborn A.M. Detection and diversity of expressed denitrification genes in estuarine sediments after reverse transcription-PCR amplification from mRNA. Appl. Environ. Microbiol. 2002, 68:5017-5025.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5017-5025
-
-
Nogales, B.1
Timmis, K.N.2
Nedwell, D.B.3
Osborn, A.M.4
-
41
-
-
80052184243
-
Osservatorio Nazionale Pedologico e per la Qualità del Suolo, Metodi di analisi chimica del suolo. Ministero delle politiche Agricole e Forestali
-
Osservatorio Nazionale Pedologico e per la Qualità del Suolo, 2000. Metodi di analisi chimica del suolo. Ministero delle politiche Agricole e Forestali.
-
(2000)
-
-
-
42
-
-
76749131754
-
Changes in active microbial soil communities in agricultural managements: from anthropic to natural
-
Pastorelli R., Piccolo R., Landi S. Changes in active microbial soil communities in agricultural managements: from anthropic to natural. Agrochimica 2009, 53:386-397.
-
(2009)
Agrochimica
, vol.53
, pp. 386-397
-
-
Pastorelli, R.1
Piccolo, R.2
Landi, S.3
-
43
-
-
77956216252
-
MRNA recovery and denitrification gene expression in clay-soil bacterial communities under different agricultural managements
-
Pastorelli R., Piccolo R., Cocco S., Landi S. mRNA recovery and denitrification gene expression in clay-soil bacterial communities under different agricultural managements. Agrochimica 2010, 54:179-192.
-
(2010)
Agrochimica
, vol.54
, pp. 179-192
-
-
Pastorelli, R.1
Piccolo, R.2
Cocco, S.3
Landi, S.4
-
44
-
-
0037184270
-
Denitrifying genes in bacterial and Archeal genomes
-
Philippot L. Denitrifying genes in bacterial and Archeal genomes. Biochim. Biophys. 2002, 1577:355-376.
-
(2002)
Biochim. Biophys.
, vol.1577
, pp. 355-376
-
-
Philippot, L.1
-
45
-
-
0036946694
-
Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils
-
Philippot L., Piutti S., Martin-Laurent F., Hallet S., Germon J.C. Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils. Appl. Environ. Microbiol. 2002, 68:6121-6128.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 6121-6128
-
-
Philippot, L.1
Piutti, S.2
Martin-Laurent, F.3
Hallet, S.4
Germon, J.C.5
-
46
-
-
0036203309
-
Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
-
Priemè A., Bracker G., Tiedje J.M. Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl. Environ. Microbiol. 2002, 68:1893-1900.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 1893-1900
-
-
Priemè, A.1
Bracker, G.2
Tiedje, J.M.3
-
47
-
-
0142040877
-
Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils
-
Rich J.J., Heichen R.S., Bottomley P.J., Cromack K., Myrold D.D. Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils. Appl. Environ. Microbiol. 2003, 69:5974-5982.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 5974-5982
-
-
Rich, J.J.1
Heichen, R.S.2
Bottomley, P.J.3
Cromack, K.4
Myrold, D.D.5
-
48
-
-
0036330611
-
Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
-
Rösch C., Mergel A., Bothe H. Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl. Environ. Microbiol. 2002, 68:3818-3929.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3818-3929
-
-
Rösch, C.1
Mergel, A.2
Bothe, H.3
-
49
-
-
0023375195
-
The neighbor-joining method: a new method for reconstructing phylogenetic trees
-
Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
50
-
-
17444413782
-
Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes
-
Sharma S., Aneja M.K., Mayer J., Munch J.C., Schloter M. Diversity of transcripts of nitrite reductase genes (nirK and nirS) in rhizospheres of grain legumes. Appl. Environ. Microbiol. 2005, 71:2001-2007.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2001-2007
-
-
Sharma, S.1
Aneja, M.K.2
Mayer, J.3
Munch, J.C.4
Schloter, M.5
-
51
-
-
33644965938
-
Influence of freeze-thaw stress on the structure and function of microbial communities and denitrifying populations in soil
-
Sharma S., Szele Z., Schilling R., Munch J.C., Schloter M. Influence of freeze-thaw stress on the structure and function of microbial communities and denitrifying populations in soil. Appl. Environ. Microbiol. 2006, 72:2148-2154.
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 2148-2154
-
-
Sharma, S.1
Szele, Z.2
Schilling, R.3
Munch, J.C.4
Schloter, M.5
-
52
-
-
63849343340
-
Transcriptional activity of paddy soil bacterial communities
-
Shrestha P.M., Kube M., Reinhardt R., Liesack W. Transcriptional activity of paddy soil bacterial communities. Environ. Microbiol. 2009, 11:960-970.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 960-970
-
-
Shrestha, P.M.1
Kube, M.2
Reinhardt, R.3
Liesack, W.4
-
53
-
-
52649158799
-
Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence
-
Smith J.M., Ogram A. Genetic and functional variation in denitrifier populations along a short-term restoration chronosequence. Appl. Environ. Microbiol. 2008, 74:5615-5620.
-
(2008)
Appl. Environ. Microbiol.
, vol.74
, pp. 5615-5620
-
-
Smith, J.M.1
Ogram, A.2
-
54
-
-
80052148582
-
-
Soil Survey Staff, Keys to Soil Taxonomy, 10th edition. U.S. Department of Agriculture, Natural Resource Conservation Service.
-
Soil Survey Staff, 2006. Keys to Soil Taxonomy, 10th edition. U.S. Department of Agriculture, Natural Resource Conservation Service.
-
(2006)
-
-
-
55
-
-
0347761170
-
Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils
-
Stres B., Mahne I., Avguštin G., Tiedje M. Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Appl. Environ. Microbiol. 2004, 70:301-309.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 301-309
-
-
Stres, B.1
Mahne, I.2
Avguštin, G.3
Tiedje, M.4
-
56
-
-
0002169635
-
Soil as an environment for microbial life
-
Marcel Decker, New York, J.D. van Elsas, J.T. Trevors, E.M.H. Wellington (Eds.)
-
Stotzky G. Soil as an environment for microbial life. Modern Soil Microbiology 1997, 1-20. Marcel Decker, New York. J.D. van Elsas, J.T. Trevors, E.M.H. Wellington (Eds.).
-
(1997)
Modern Soil Microbiology
, pp. 1-20
-
-
Stotzky, G.1
-
57
-
-
4344685944
-
Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
-
Throbäck I.N., Enwall K., Jarvis Å., Hallin S. Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol. Ecol. 2004, 49:401-417.
-
(2004)
FEMS Microbiol. Ecol.
, vol.49
, pp. 401-417
-
-
Throbäck, I.N.1
Enwall, K.2
Jarvis, Å.3
Hallin, S.4
-
58
-
-
34247165436
-
Silver (Ag+) reduces denitrification and induces enrichment of novel nirK genotypes in soil
-
Throbäck I.N., Johanssson M., Rosenquist M., Pel M., Hansson M., Hallin S. Silver (Ag+) reduces denitrification and induces enrichment of novel nirK genotypes in soil. FEMS Microbiol. Lett. 2007, 270:189-194.
-
(2007)
FEMS Microbiol. Lett.
, vol.270
, pp. 189-194
-
-
Throbäck, I.N.1
Johanssson, M.2
Rosenquist, M.3
Pel, M.4
Hansson, M.5
Hallin, S.6
-
59
-
-
0002137823
-
Ecology of denitrification and dissimilatory nitrate reduction to ammonium
-
John Wiley & Sons Inc., New York, A.J.B. Zehnder (Ed.)
-
Tiedje J.M. Ecology of denitrification and dissimilatory nitrate reduction to ammonium. Biology of Anaerobic Microorganisms 1988, 179-244. John Wiley & Sons Inc., New York. A.J.B. Zehnder (Ed.).
-
(1988)
Biology of Anaerobic Microorganisms
, pp. 179-244
-
-
Tiedje, J.M.1
-
60
-
-
80052165449
-
Climate Change and soil carbon sink: evaluation of the spatial variation of the soil organic carbon stocks in typical cropping systems of Gallura (North-East area of Sardinia)
-
Ph.D. Thesis. University of Sassari, Italy.
-
Urracci, R.G., 2009. Climate Change and soil carbon sink: evaluation of the spatial variation of the soil organic carbon stocks in typical cropping systems of Gallura (North-East area of Sardinia). Ph.D. Thesis. University of Sassari, Italy.
-
(2009)
-
-
Urracci, R.G.1
-
61
-
-
0028509254
-
TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
-
Van de Peer Y., De Wachter R. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Appl. Biosci. 1994, 10:569-570.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 569-570
-
-
Van de Peer, Y.1
De Wachter, R.2
-
62
-
-
72949089516
-
Diversity of nirK denitrifying genes and transcripts in an agricultural soil
-
Wertz S., Dandie C.E., Goyer C., Trevors J.T., Patten C.L. Diversity of nirK denitrifying genes and transcripts in an agricultural soil. Appl. Environ. Microbiol. 2009, 75:7365-7377.
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7365-7377
-
-
Wertz, S.1
Dandie, C.E.2
Goyer, C.3
Trevors, J.T.4
Patten, C.L.5
-
63
-
-
2142761510
-
Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
-
Wolsing M., Priemé A. Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiol. Ecol. 2004, 48:261-271.
-
(2004)
FEMS Microbiol. Ecol.
, vol.48
, pp. 261-271
-
-
Wolsing, M.1
Priemé, A.2
-
64
-
-
66249149001
-
Gut-associated denitrification and in vivo emission of nitrous oxide by the earthworm families Megascolecidae and Lumbricidae in New Zeland
-
Wust P.K., Horn A.M.A., Henderson G., Janssen P.H., Rehm B.H.A., Drake H.L. Gut-associated denitrification and in vivo emission of nitrous oxide by the earthworm families Megascolecidae and Lumbricidae in New Zeland. Appl. Environ. Mirobiol. 2009, 75:3430-3436.
-
(2009)
Appl. Environ. Mirobiol.
, vol.75
, pp. 3430-3436
-
-
Wust, P.K.1
Horn, A.M.A.2
Henderson, G.3
Janssen, P.H.4
Rehm, B.H.A.5
Drake, H.L.6
-
65
-
-
0037229896
-
Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater
-
Yan T., Fields M.W., Wu L., Zu Y., Tiedje J.M., Zhou J. Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ. Microbiol. 2003, 5:13-24.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 13-24
-
-
Yan, T.1
Fields, M.W.2
Wu, L.3
Zu, Y.4
Tiedje, J.M.5
Zhou, J.6
-
66
-
-
70349127272
-
Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil
-
Yoshida M., Ishii S., Otsuka S., Senoo K. Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil. Soil Biol. Biochem. 2009, 41:2044-2051.
-
(2009)
Soil Biol. Biochem.
, vol.41
, pp. 2044-2051
-
-
Yoshida, M.1
Ishii, S.2
Otsuka, S.3
Senoo, K.4
-
67
-
-
0034053725
-
A greedy algorithm for aligning DNA sequences
-
Zhang Z., Schwartz S., Wagner L., Miller W. A greedy algorithm for aligning DNA sequences. J. Comput. Biol. 2000, 7:203-214.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 203-214
-
-
Zhang, Z.1
Schwartz, S.2
Wagner, L.3
Miller, W.4
-
68
-
-
0036136025
-
Spatial and resource factors influencing high microbial diversity in soil
-
Zhou J., Xia B., Treves D.S., Wu L.Y., Marsh T.L., O'Neill R.V., Palumbo A.V., Tiedje J.M. Spatial and resource factors influencing high microbial diversity in soil. Appl. Environ. Microbiol. 2002, 68:326-334.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 326-334
-
-
Zhou, J.1
Xia, B.2
Treves, D.S.3
Wu, L.Y.4
Marsh, T.L.5
O'Neill, R.V.6
Palumbo, A.V.7
Tiedje, J.M.8
-
69
-
-
0031456471
-
Cell biology and molecular basis of denitrification
-
Zumft W. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 1997, 61:533-616.
-
(1997)
Microbiol. Mol. Biol. Rev.
, vol.61
, pp. 533-616
-
-
Zumft, W.1
|