메뉴 건너뛰기




Volumn 13, Issue 3, 2008, Pages 73-89

Construction of a consortium comprising ammonia-oxidizing bacteria and denitrifying bacteria isolated from marine sediment

Author keywords

Ammonia oxidizing bacteria; Consortium; Denitrifying bacteria; Marine sediment; PCR DGGE

Indexed keywords

AMMONIA; BIODEGRADATION; CLONING; DENITRIFICATION; ELECTROPHORESIS; GENES; NITROGEN REMOVAL; POLYMERASE CHAIN REACTION; RNA; SEDIMENTS; SUBMARINE GEOLOGY;

EID: 53849137362     PISSN: 13424815     EISSN: None     Source Type: Journal    
DOI: 10.4265/bio.13.73     Document Type: Article
Times cited : (15)

References (43)
  • 1
    • 0343009445 scopus 로고
    • American Water Works Association, and Water Pollution Control Federation
    • American Public Health Association, 14th ed. American Public Health Association, New York
    • American Public Health Association, American Water Works Association, and Water Pollution Control Federation. (1975) Standard methods for examination of water and wastewater, 14th ed. American Public Health Association, New York.
    • (1975) Standard methods for examination of water and wastewater
  • 2
    • 0037978972 scopus 로고    scopus 로고
    • Nitric oxide reductase (norB) genes from pure cultures and environmental samples
    • Braker, G., and Tiedje, J.M. (2003) Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Appl. Environ. Microbiol., 69, 3476-3483.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3476-3483
    • Braker, G.1    Tiedje, J.M.2
  • 3
    • 15244339396 scopus 로고    scopus 로고
    • Phylogenetic analysis of nitric oxide reductase gene homologues from aerobic ammonia-oxidizing bacteria
    • Casciotti, L.K., and Ward, B.B. (2005) Phylogenetic analysis of nitric oxide reductase gene homologues from aerobic ammonia-oxidizing bacteria. FEMS Microbiol. Ecology, 52, 197-205.
    • (2005) FEMS Microbiol. Ecology , vol.52 , pp. 197-205
    • Casciotti, L.K.1    Ward, B.B.2
  • 4
    • 84977322088 scopus 로고
    • Denitrification in continental shelf sediments has major impact on the oxenic nitrogen budget
    • Christensen, J.P., Murray, J.W., Decal, A.H., and Codispoti, L.A. (1987) Denitrification in continental shelf sediments has major impact on the oxenic nitrogen budget. Global Biogeochem. Cycles., 1, 97-116.
    • (1987) Global Biogeochem. Cycles , vol.1 , pp. 97-116
    • Christensen, J.P.1    Murray, J.W.2    Decal, A.H.3    Codispoti, L.A.4
  • 6
    • 0032964425 scopus 로고    scopus 로고
    • PCR detection of genes encoding nitrite reductase in denitrifying bacteria
    • Hallin, S. and Lindgren, P-E. (1999) PCR detection of genes encoding nitrite reductase in denitrifying bacteria. Appl. Environ. Microbiol., 65, 1652-1657.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 1652-1657
    • Hallin, S.1    Lindgren, P.-E.2
  • 8
    • 0000352994 scopus 로고
    • Nitrification in estuarine and coastal marine sediments
    • Blabkburn, T.H, and Sorensen, J, Eds, Wiley-Liss, New York, pp
    • Henrilsen, K. and Kemp, M. (1988) Nitrification in estuarine and coastal marine sediments. In Blabkburn, T.H., and Sorensen, J. (Eds.), Nitrogen Cycling in Coastal Marine Environments. Wiley-Liss, New York, pp.207-273.
    • (1988) Nitrogen Cycling in Coastal Marine Environments , pp. 207-273
    • Henrilsen, K.1    Kemp, M.2
  • 10
    • 0038054120 scopus 로고    scopus 로고
    • Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences
    • Kisand, V. and Wikner, J. (2003) Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences. J. Microbiol. Methods., 54, 183-191.
    • (2003) J. Microbiol. Methods , vol.54 , pp. 183-191
    • Kisand, V.1    Wikner, J.2
  • 11
    • 0034868585 scopus 로고    scopus 로고
    • Distribution and ecophysiology of the denitrifying bacteria emphasizing cultured species
    • Koops, H-P., and Pommerening-Roser, A. (2001) Distribution and ecophysiology of the denitrifying bacteria emphasizing cultured species. FEMS Microbiol. Ecol., 37, 1-9.
    • (2001) FEMS Microbiol. Ecol , vol.37 , pp. 1-9
    • Koops, H.-P.1    Pommerening-Roser, A.2
  • 12
    • 0020465212 scopus 로고
    • Effect of organic matter on growth and cell yields of ammonia-oxidizing bacteria
    • Krummel, A., and Harms, H. (1982) Effect of organic matter on growth and cell yields of ammonia-oxidizing bacteria. Arch. Microbiol., 133, 50-54.
    • (1982) Arch. Microbiol , vol.133 , pp. 50-54
    • Krummel, A.1    Harms, H.2
  • 13
    • 19644397623 scopus 로고    scopus 로고
    • Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment
    • Liu, C., and Shao, Z. (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment Int. J. Syst. Evol. Microbiol., 55, 1181-1186.
    • (2005) Int. J. Syst. Evol. Microbiol , vol.55 , pp. 1181-1186
    • Liu, C.1    Shao, Z.2
  • 14
    • 0038654477 scopus 로고    scopus 로고
    • Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the pacific coast of Mexico
    • Liu, X., Tiquia, S. M., Holguin, G., Wu, L., Nold, S. C., Devol, A. H., Luo, K., Palumbo, A. V., Tiedje, J.M., and Zhou, J. (2003) Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the pacific coast of Mexico. Appl. Environ. Microbiol., 69, 3549-3560.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3549-3560
    • Liu, X.1    Tiquia, S.M.2    Holguin, G.3    Wu, L.4    Nold, S.C.5    Devol, A.H.6    Luo, K.7    Palumbo, A.V.8    Tiedje, J.M.9    Zhou, J.10
  • 15
    • 0033377758 scopus 로고    scopus 로고
    • Initial fish-farm impact on meiofaunal assemblages in coastal sediments of the Western Mediterranean
    • Mazzola, S., Mirto, S., and Danovaro, R. (1999) Initial fish-farm impact on meiofaunal assemblages in coastal sediments of the Western Mediterranean. Mar. pollut. Bull., 38, 1126-1133.
    • (1999) Mar. pollut. Bull , vol.38 , pp. 1126-1133
    • Mazzola, S.1    Mirto, S.2    Danovaro, R.3
  • 16
    • 0032874459 scopus 로고    scopus 로고
    • Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β-subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer
    • Mendum, T.A., Socktt, R.E., and Hirsch, P.R. (1999) Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β-subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer. Appl. Environ. Microbiol., 65, 4155-4162.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 4155-4162
    • Mendum, T.A.1    Socktt, R.E.2    Hirsch, P.R.3
  • 17
    • 0001868073 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) in microbial ecology
    • Akkermans, A. D. L, Van Elsas, J. D. and Bruijn, F. J, Eds, Kluwer Academic Publishers, pp
    • Muyzer, G., Brinkhoff, U., Nubel, C., Sanegoeds, H., Schafer, H., and Waver, C. (1998) Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In Akkermans, A. D. L., Van Elsas, J. D. and Bruijn, F. J., (Eds.), Molecular Microbial Ecology Manual, Kluwer Academic Publishers, pp1-27.
    • (1998) Molecular Microbial Ecology Manual , pp. 1-27
    • Muyzer, G.1    Brinkhoff, U.2    Nubel, C.3    Sanegoeds, H.4    Schafer, H.5    Waver, C.6
  • 18
    • 46749092850 scopus 로고    scopus 로고
    • Nitrogen removal from seawater by ammonia-oxidizing and denitrifying bacteria immobilized on porous sintered materials form sea bottom sediments: Fundamental study
    • Nakahama, K., Nakano, M., Imai, D., Dabwan, A.H.A., Kaneco, S., Suzuki, T., Katsumata, H., and Ohta, K. (2007) Nitrogen removal from seawater by ammonia-oxidizing and denitrifying bacteria immobilized on porous sintered materials form sea bottom sediments: Fundamental study. ITE Lett. New Technol. and Medicine, 8, 729-734.
    • (2007) ITE Lett. New Technol. and Medicine , vol.8 , pp. 729-734
    • Nakahama, K.1    Nakano, M.2    Imai, D.3    Dabwan, A.H.A.4    Kaneco, S.5    Suzuki, T.6    Katsumata, H.7    Ohta, K.8
  • 19
    • 37249066366 scopus 로고    scopus 로고
    • Present conditions and changes in recent years in organic pollution of bottom sediments in Ago Bay
    • in Japanese
    • Nakanishi, K., Masuda, K., Hata, N., and Yamagata, Y. (2001) Present conditions and changes in recent years in organic pollution of bottom sediments in Ago Bay. Bull. Fish. Res. Div. Mie, 10, 71-77. (in Japanese).
    • (2001) Bull. Fish. Res. Div. Mie , vol.10 , pp. 71-77
    • Nakanishi, K.1    Masuda, K.2    Hata, N.3    Yamagata, Y.4
  • 21
    • 0036242855 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria
    • Nicolaisen, M.H., and Ramsing, N.B. (2002) Denaturing gradient gel electrophoresis (DGGE) approaches to study the diversity of ammonia-oxidizing bacteria. J. Microbiol. Method., 50, 189-203.
    • (2002) J. Microbiol. Method , vol.50 , pp. 189-203
    • Nicolaisen, M.H.1    Ramsing, N.B.2
  • 23
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on the comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
    • Purkhold, U., Pommerening-Roser, A., Juretschko, S., Schmid, M.C., Koop, H-P., and Wagner, M. (2000) Phylogeny of all recognized species of ammonia oxidizers based on the comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol., 66, 5382-6368.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5382-6368
    • Purkhold, U.1    Pommerening-Roser, A.2    Juretschko, S.3    Schmid, M.C.4    Koop, H.-P.5    Wagner, M.6
  • 24
    • 0028878596 scopus 로고
    • Dietzia, a new genus including Dietzia maris comb. Nov., formerly Rhodococcus maris
    • Rainey, F.A., Klatte, S., Kroppenstedt, R.M., and Stackebrandt E. (1995) Dietzia, a new genus including Dietzia maris comb. Nov., formerly Rhodococcus maris. Int. J. Syst. Bacteriol., 45, 32-36.
    • (1995) Int. J. Syst. Bacteriol , vol.45 , pp. 32-36
    • Rainey, F.A.1    Klatte, S.2    Kroppenstedt, R.M.3    Stackebrandt, E.4
  • 25
    • 0030814870 scopus 로고    scopus 로고
    • The ammonia monooxygenase structural gene amoA as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
    • Rotthauwe, J.H., Witzel, K.P., and Liesack, W. (1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl. Environ. Microbiol., 63, 4704-4712.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 4704-4712
    • Rotthauwe, J.H.1    Witzel, K.P.2    Liesack, W.3
  • 26
    • 0017337858 scopus 로고
    • Microtechnique for most-probable number analysis
    • Rowe, R., Todd, R., and Waide, J. (1977) Microtechnique for most-probable number analysis. Appl. Environ. Microbiol., 33, 675-680.
    • (1977) Appl. Environ. Microbiol , vol.33 , pp. 675-680
    • Rowe, R.1    Todd, R.2    Waide, J.3
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0034071156 scopus 로고    scopus 로고
    • Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis
    • Scala, D.J. and Kerkhof, L.J. (2000) Horizontal heterogeneity of denitrifying bacterial communities in marine sediments by terminal restriction fragment length polymorphism analysis. Appl. Environ. Microbiol., 66, 1980-1986.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1980-1986
    • Scala, D.J.1    Kerkhof, L.J.2
  • 30
    • 0032080514 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
    • Scala, D.J. and Kerkhof, L.J. (1998) Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol. Lett., 162, 61-68.
    • (1998) FEMS Microbiol. Lett , vol.162 , pp. 61-68
    • Scala, D.J.1    Kerkhof, L.J.2
  • 32
    • 0034551698 scopus 로고    scopus 로고
    • Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm
    • Scharamm, A., De Beer, D., Gieseke, A., and Amann, R. (2000) Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ. Microbiol., 2, 680-686.
    • (2000) Environ. Microbiol , vol.2 , pp. 680-686
    • Scharamm, A.1    De Beer, D.2    Gieseke, A.3    Amann, R.4
  • 33
    • 85036889459 scopus 로고    scopus 로고
    • Schmidt, EL., and Belser, L.W. (1982) Enumeration by most probable number. In: Methods of soil analysis, Part 2. Chemical and Microbiological Properties-Agronomy Monograph no.9, 2nd edn. S. Segoe Rd., Madison, WI USA. pp1027-1031.
    • Schmidt, EL., and Belser, L.W. (1982) Enumeration by most probable number. In: Methods of soil analysis, Part 2. Chemical and Microbiological Properties-Agronomy Monograph no.9, 2nd edn. S. Segoe Rd., Madison, WI USA. pp1027-1031.
  • 35
    • 0020112796 scopus 로고
    • Industrial waters as carbon sources in biological denitrification
    • Skinde, J.R., and Bhagat, S.K. (1982) Industrial waters as carbon sources in biological denitrification. J. WPCF, 54, 370-377.
    • (1982) J. WPCF , vol.54 , pp. 370-377
    • Skinde, J.R.1    Bhagat, S.K.2
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876-4882.
    • (1997) Nucleic Acids Research , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • Throback, I.N., Enwall, K., Jarvis, A., and Hallin, S. (2004) Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol. Ecology, 49, 401-417.
    • (2004) FEMS Microbiol. Ecology , vol.49 , pp. 401-417
    • Throback, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 40
    • 0029416228 scopus 로고
    • The environmental impact of marine fish culture: Towards a sustainable future
    • Wu, R. (1995) The environmental impact of marine fish culture: towards a sustainable future. Mar. pollut. Bull., 31, 159-166.
    • (1995) Mar. pollut. Bull , vol.31 , pp. 159-166
    • Wu, R.1
  • 41
  • 42
    • 33645957968 scopus 로고    scopus 로고
    • Denitrification in recirculating systems: Theory and applications
    • Van Rijn, Tal, Y., and Schreier, H.J. (2006) Denitrification in recirculating systems: Theory and applications. Aquacult. Eng., 34, 364-376.
    • (2006) Aquacult. Eng , vol.34 , pp. 364-376
    • Van Rijn, T.Y.1    Schreier, H.J.2
  • 43
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft, W.G. (1997) Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev., 61, 533-616.
    • (1997) Microbiol. Mol. Biol. Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.