메뉴 건너뛰기




Volumn 71, Issue 12, 2005, Pages 8335-8343

Activity and composition of the denitrifying bacterial community respond differently to long-term fertilization

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL COMMUNITY; GEL ELECTROPHORESIS; SOIL RESPIRATION;

EID: 29144511306     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.12.8335-8343.2005     Document Type: Article
Times cited : (325)

References (41)
  • 1
    • 0036840895 scopus 로고    scopus 로고
    • 2O release and on the community structure of ammonia oxidizers and denitrifiers
    • 2O release and on the community structure of ammonia oxidizers and denitrifiers. Appl. Environ. Microbiol. 68:5685-5692.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5685-5692
    • Avrahami, S.1    Conrad, R.2    Braker, G.3
  • 2
    • 0030420524 scopus 로고    scopus 로고
    • Direct emission of nitrous oxide from agricultural soils
    • Bouwman, A. F. 1996. Direct emission of nitrous oxide from agricultural soils. Nutr. Cycl. Agroecosyst. 46:53-70.
    • (1996) Nutr. Cycl. Agroecosyst. , vol.46 , pp. 53-70
    • Bouwman, A.F.1
  • 3
    • 0031401260 scopus 로고    scopus 로고
    • Sources of nitrous oxide in soils
    • Bremner, J. M. 1997. Sources of nitrous oxide in soils. Nutr. Cycl. Agroecosyst. 49:7-16.
    • (1997) Nutr. Cycl. Agroecosyst. , vol.49 , pp. 7-16
    • Bremner, J.M.1
  • 4
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Prasser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prasser, J.I.4    Paul, E.A.5
  • 5
    • 0001364080 scopus 로고
    • Relationships between the denitrification capacities of soils and total, water-soluble and readily decomposable soil organic matter
    • Burford, J., and J. M. Bremner. 1975. Relationships between the denitrification capacities of soils and total, water-soluble and readily decomposable soil organic matter. Soil Biol. Biochem. 7:389-394.
    • (1975) Soil Biol. Biochem. , vol.7 , pp. 389-394
    • Burford, J.1    Bremner, J.M.2
  • 6
    • 0033939308 scopus 로고    scopus 로고
    • The functional significance of denitrifier community composition in a terrestrial ecosystem
    • Cavigelli, M. A., and G. P. Robertson. 2000. The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology 81: 1402-1414.
    • (2000) Ecology , vol.81 , pp. 1402-1414
    • Cavigelli, M.A.1    Robertson, G.P.2
  • 7
    • 0042285618 scopus 로고    scopus 로고
    • Genetic characterization of the nitrate reducing community based on narG nucleotide sequence analysis
    • Cheneby, D., S. Hallet, A. Mondon, F. Martin-Laurent, J. C. Germon, and L. Philippot. 2003. Genetic characterization of the nitrate reducing community based on narG nucleotide sequence analysis. Microb. Ecol. 46:113-121.
    • (2003) Microb. Ecol. , vol.46 , pp. 113-121
    • Cheneby, D.1    Hallet, S.2    Mondon, A.3    Martin-Laurent, F.4    Germon, J.C.5    Philippot, L.6
  • 10
    • 0037338334 scopus 로고    scopus 로고
    • Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils
    • Girvan, M. S., J. Bullimore, J. N. Pretty, A. M. Osborn, and A. S. Ball. 2003. Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils. Appl. Environ. Microbiol. 69: 1800-1809.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 1800-1809
    • Girvan, M.S.1    Bullimore, J.2    Pretty, J.N.3    Osborn, A.M.4    Ball, A.S.5
  • 11
    • 0030054296 scopus 로고    scopus 로고
    • New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region
    • Gurtler, V., and V. A. Stanisich. 1996. New approaches to typing and identification of bacteria using the 16S-23S rDNA spacer region. Microbiology 142:3-16.
    • (1996) Microbiology , vol.142 , pp. 3-16
    • Gurtler, V.1    Stanisich, V.A.2
  • 15
    • 0034788680 scopus 로고    scopus 로고
    • Denitrification within the genus Azospirillum and other associative bacteria
    • Kloos, K., A. Mergel, C. Rosch, and H. Bothe. 2001. Denitrification within the genus Azospirillum and other associative bacteria. Aust. J. Plant Physiol. 28:991-998.
    • (2001) Aust. J. Plant Physiol. , vol.28 , pp. 991-998
    • Kloos, K.1    Mergel, A.2    Rosch, C.3    Bothe, H.4
  • 16
    • 0032874459 scopus 로고    scopus 로고
    • Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer
    • Mendum, T. A., R. E. Sockett, and P. R. Hirsch. 1999. Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the β subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer. Appl. Environ. Microbiol. 65:4155-4162.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4155-4162
    • Mendum, T.A.1    Sockett, R.E.2    Hirsch, P.R.3
  • 17
    • 0032704710 scopus 로고    scopus 로고
    • Prokaryotic nitrate reduction: Molecular properties and functional distinction among bacterial nitrate reductases
    • Moreno-Vivian, C., P. Cabello, M. Martinez-Luque, R. Blasco, and F. Castillo. 1999. Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J. Bacteriol. 181:6573-6584.
    • (1999) J. Bacteriol. , vol.181 , pp. 6573-6584
    • Moreno-Vivian, C.1    Cabello, P.2    Martinez-Luque, M.3    Blasco, R.4    Castillo, F.5
  • 22
    • 0029667087 scopus 로고    scopus 로고
    • Potential denitrification activity assay in soil-with or without chloramphenicol?
    • Pell, M., B. Stenberg, J. Stenstrom, and L. Torstensson. 1996. Potential denitrification activity assay in soil-with or without chloramphenicol? Soil Biol. Biochem. 28:393-398.
    • (1996) Soil Biol. Biochem. , vol.28 , pp. 393-398
    • Pell, M.1    Stenberg, B.2    Stenstrom, J.3    Torstensson, L.4
  • 23
    • 20444448894 scopus 로고    scopus 로고
    • Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community
    • Philippot, L., and S. Hallin. 2005. Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community. Curr. Opin. Microbiol. 8:234-239.
    • (2005) Curr. Opin. Microbiol. , vol.8 , pp. 234-239
    • Philippot, L.1    Hallin, S.2
  • 24
    • 0033040979 scopus 로고    scopus 로고
    • Dissimilatory nitrate reductases in bacteria
    • Philippot, L., and O. Hojberg. 1999. Dissimilatory nitrate reductases in bacteria. BBA Gene Struct. Expr. 1446:1-23.
    • (1999) BBA Gene Struct. Expr. , vol.1446 , pp. 1-23
    • Philippot, L.1    Hojberg, O.2
  • 25
  • 26
    • 0034016511 scopus 로고    scopus 로고
    • Quantitative analysis of ammonia oxidising bacteria using competitive PCR
    • Phillips, C. J., E. A. Paul, and J. I. Prosser. 2000. Quantitative analysis of ammonia oxidising bacteria using competitive PCR. FEMS Microbiol. Ecol. 32:167-175.
    • (2000) FEMS Microbiol. Ecol. , vol.32 , pp. 167-175
    • Phillips, C.J.1    Paul, E.A.2    Prosser, J.I.3
  • 27
    • 0142040877 scopus 로고    scopus 로고
    • Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils
    • Rich, J. J., R. S. Heichen, P. J. Bottomley, K. Cromack, and D. D. Myrold. 2003. Community composition and functioning of denitrifying bacteria from adjacent meadow and forest soils. Appl. Environ. Microbiol. 69:5974-5982.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 5974-5982
    • Rich, J.J.1    Heichen, R.S.2    Bottomley, P.J.3    Cromack, K.4    Myrold, D.D.5
  • 28
    • 3242813944 scopus 로고    scopus 로고
    • Community composition and activities of denitrifying bacteria from adjacent agricultural soil, riparian soil, and creek sediment in Oregon, USA
    • Rich, J. J., and D. D. Myrold. 2004. Community composition and activities of denitrifying bacteria from adjacent agricultural soil, riparian soil, and creek sediment in Oregon, USA. Soil Biol. Biochem. 36:1431-1441.
    • (2004) Soil Biol. Biochem. , vol.36 , pp. 1431-1441
    • Rich, J.J.1    Myrold, D.D.2
  • 29
    • 0034233670 scopus 로고    scopus 로고
    • Soil carbon and nitrogen dynamics following application of pig slurry for the 19th consecutive year. II. Nitrous oxide fluxes and mineral nitrogen
    • Rochette, P., E. van Bochove, D. Prevost, D. A. Angers, D. Cote, and N. Bertrand. 2000. Soil carbon and nitrogen dynamics following application of pig slurry for the 19th consecutive year. II. Nitrous oxide fluxes and mineral nitrogen. Soil Sci. Soc. Am. J. 64:1396-1403.
    • (2000) Soil Sci. Soc. Am. J. , vol.64 , pp. 1396-1403
    • Rochette, P.1    Van Bochove, E.2    Prevost, D.3    Angers, D.A.4    Cote, D.5    Bertrand, N.6
  • 30
    • 0036330611 scopus 로고    scopus 로고
    • Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil
    • Rosch, C., A. Mergel, and H. Bothe. 2002. Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil. Appl. Environ. Microbiol. 68:3818-3829.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3818-3829
    • Rosch, C.1    Mergel, A.2    Bothe, H.3
  • 31
    • 0023375195 scopus 로고
    • The neighbor-joining method - A new method for reconstructing phylogenetic trees
    • Saitou, N., and M. Nei. 1987. The neighbor-joining method-a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 32
    • 0036721322 scopus 로고    scopus 로고
    • What is the so-called optimum pH for denitrification in soil?
    • Simek, M., L. Jisova, and D. W. Hopkins. 2002. What is the so-called optimum pH for denitrification in soil? Soil Biol. Biochem. 34:1227-1234.
    • (2002) Soil Biol. Biochem. , vol.34 , pp. 1227-1234
    • Simek, M.1    Jisova, L.2    Hopkins, D.W.3
  • 33
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed
    • Smalla, K., G. Wieland, A. Buchner, A. Zock, J. Parzy, S. Kaiser, N. Roskot, H. Heuer, and G. Berg. 2001. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67:4742-4751.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 35
    • 4344685944 scopus 로고    scopus 로고
    • Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE
    • Throbäck, I. N., K. Enwall, A. Jarvis, and S. Hallin. 2004. Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. FEMS Microbiol. Ecol. 49:401-417.
    • (2004) FEMS Microbiol. Ecol. , vol.49 , pp. 401-417
    • Throbäck, I.N.1    Enwall, K.2    Jarvis, A.3    Hallin, S.4
  • 36
    • 0002137823 scopus 로고
    • Ecology of denitrification and dissimilatory nitrate reduction to ammonium
    • A. J. B. Zehnder (ed.). John Wiley and Sons, New York, N.Y.
    • Tiedje, J. M. 1988. Ecology of denitrification and dissimilatory nitrate reduction to ammonium, p. 179-244. In A. J. B. Zehnder (ed.), Biology of anaerobic microorganisms. John Wiley and Sons, New York, N.Y.
    • (1988) Biology of Anaerobic Microorganisms , pp. 179-244
    • Tiedje, J.M.1
  • 38
    • 0028509254 scopus 로고
    • Treecon for Windows - A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Vandepeer, Y., and R. Dewachter. 1994. Treecon for Windows-a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. Applic. Biosci. 10:569-570.
    • (1994) Comput. Applic. Biosci. , vol.10 , pp. 569-570
    • Vandepeer, Y.1    Dewachter, R.2
  • 39
    • 0036135250 scopus 로고    scopus 로고
    • Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations
    • Webster, G., T. M. Embley, and J. I. Prosser. 2002. Grassland management regimens reduce small-scale heterogeneity and species diversity of β-proteobacterial ammonia oxidizer populations. Appl. Environ. Microbiol. 68: 20-30.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 20-30
    • Webster, G.1    Embley, T.M.2    Prosser, J.I.3
  • 40
    • 2142761510 scopus 로고    scopus 로고
    • Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments
    • Wolsing, M., and A. Prieme. 2004. Observation of high seasonal variation in community structure of denitrifying bacteria in arable soil receiving artificial fertilizer and cattle manure by determining T-RFLP of nir gene fragments. FEMS Microbiol. Ecol. 48:261-271.
    • (2004) FEMS Microbiol. Ecol. , vol.48 , pp. 261-271
    • Wolsing, M.1    Prieme, A.2
  • 41
    • 0000266664 scopus 로고
    • The denitrifying prokaryotes
    • A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.). Springer-Verlag, New York, N.Y.
    • Zumft, W. G. 1992. The denitrifying prokaryotes, p. 554-582. In A. Balows, H. G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer (ed.), The prokaryotes. Springer-Verlag, New York, N.Y.
    • (1992) The Prokaryotes , pp. 554-582
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.