메뉴 건너뛰기




Volumn 5, Issue 1, 2003, Pages 13-24

Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CLONING, MOLECULAR; FRESH WATER; MOLECULAR SEQUENCE DATA; NITRATES; NITRITE REDUCTASES; PHYLOGENY; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; URANIUM; VARIATION (GENETICS); WATER POLLUTION, CHEMICAL;

EID: 0037229896     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2003.00393.x     Document Type: Article
Times cited : (171)

References (28)
  • 1
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker, G., Fesefeldt, A., and Witzel, K.-P. (1998) Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl Environ Microbiol 64: 3769-3775.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.-P.3
  • 2
    • 0034016758 scopus 로고    scopus 로고
    • Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities
    • Braker, G., Zhou, J., Wu, L., Devol, A.H., and Tiedje, J.M. (2000) Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities. Appl Environ Microbiol 66: 2096-2104.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 2096-2104
    • Braker, G.1    Zhou, J.2    Wu, L.3    Devol, A.H.4    Tiedje, J.M.5
  • 3
    • 0035063184 scopus 로고    scopus 로고
    • A molecular phylogenetic survey of sea-ice microbial communities (SIMCO)
    • Brown, M.V., and Bowman, J.P. (2001) A molecular phylogenetic survey of sea-ice microbial communities (SIMCO). FEMS Microbiol Ecol 35: 267-275.
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 267-275
    • Brown, M.V.1    Bowman, J.P.2
  • 4
    • 0035350952 scopus 로고    scopus 로고
    • Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria
    • Casciotti, K.L., and Ward, B.B. (2001) Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria. Appl Environ Microbiol 67: 2213-2221.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2213-2221
    • Casciotti, K.L.1    Ward, B.B.2
  • 5
    • 0033939308 scopus 로고    scopus 로고
    • The functional significance of denitrifier community composition in a terrestrial ecosystem
    • Cavigelli, M., and Robertson, G.P. (2000) The functional significance of denitrifier community composition in a terrestrial ecosystem. Ecology 81: 1402-1414.
    • (2000) Ecology , vol.81 , pp. 1402-1414
    • Cavigelli, M.1    Robertson, G.P.2
  • 6
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao, A. (1984) Nonparametric estimation of the number of classes in a population. Scand J Stat 11: 265-270.
    • (1984) Scand J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 7
    • 0022901147 scopus 로고
    • Future global warming from atmosphereic trace gases
    • Dickinson, R.E., and Cicerone, R.J. (1986) Future global warming from atmosphereic trace gases. Nature 319: 109-115.
    • (1986) Nature , vol.319 , pp. 109-115
    • Dickinson, R.E.1    Cicerone, R.J.2
  • 8
    • 0032964425 scopus 로고    scopus 로고
    • PCR detection of genes encoding nitrite reductase in denitrifying bacteria
    • Hallin, S., and Lindgren, P. (1999) PCR detection of genes encoding nitrite reductase in denitrifying bacteria. Appl Environ Microbiol 65: 1652-1657.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1652-1657
    • Hallin, S.1    Lindgren, P.2
  • 11
    • 0034054086 scopus 로고    scopus 로고
    • Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis
    • Layton, A.C., Karanth, P.N., Lajoie, C.A., Meyers, A.J., Gregory, I.R., Stapleton, R.D., Taylor, D.E., and Sayler, G.S. (2000) Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis. Appl Environ Microbiol 66: 1167-1174.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1167-1174
    • Layton, A.C.1    Karanth, P.N.2    Lajoie, C.A.3    Meyers, A.J.4    Gregory, I.R.5    Stapleton, R.D.6    Taylor, D.E.7    Sayler, G.S.8
  • 13
    • 0002868950 scopus 로고
    • Principles and concepts pertaining to organization at the community level
    • Philadelphia, PA: Saunders College Publishing
    • Odum, E.P. (1971) Principles and concepts pertaining to organization at the community level. In Fundmentals of Ecology. Philadelphia, PA: Saunders College Publishing, pp. 140-161.
    • (1971) Fundmentals of Ecology , pp. 140-161
    • Odum, E.P.1
  • 14
    • 0022819416 scopus 로고
    • Evolutionary relationships of denitrifying bacteria as deduced from 5S rRNA sequences
    • Ohkubo, S., Iwasaki, H., Hori, H., and Osawa, S. (1986) Evolutionary relationships of denitrifying bacteria as deduced from 5S rRNA sequences. J Biochem 100: 1261-1267.
    • (1986) J Biochem , vol.100 , pp. 1261-1267
    • Ohkubo, S.1    Iwasaki, H.2    Hori, H.3    Osawa, S.4
  • 16
    • 0036203309 scopus 로고    scopus 로고
    • Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils
    • Prieme, A., Braker, G., and Tiedje, J.M. (2002) Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Appl Environ Microbiol 68: 1893-1900.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1893-1900
    • Prieme, A.1    Braker, G.2    Tiedje, J.M.3
  • 17
    • 0034466757 scopus 로고    scopus 로고
    • Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys
    • Purkhold, U., Pommeriening-Roser, A., Juretschko, S., Schmid, M.C., Koops, H.-P., and Wagner, M. (2000) Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys. Appl Environ Microbiol 66: 5368-5382.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 5368-5382
    • Purkhold, U.1    Pommeriening-Roser, A.2    Juretschko, S.3    Schmid, M.C.4    Koops, H.-P.5    Wagner, M.6
  • 18
    • 0035145056 scopus 로고    scopus 로고
    • Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning
    • Qiu, X., Wu, L., Huang, H., McDonel, P.E., Palumbo, A.V., Tiedje, J.M., and Zhou, J. (2001) Evaluation of PCR-generated chimeras, mutations, and heteroduplexes with 16S rRNA gene-based cloning. Appl Envir Microbiol 67: 880-887.
    • (2001) Appl Envir Microbiol , vol.67 , pp. 880-887
    • Qiu, X.1    Wu, L.2    Huang, H.3    McDonel, P.E.4    Palumbo, A.V.5    Tiedje, J.M.6    Zhou, J.7
  • 19
    • 0036533858 scopus 로고    scopus 로고
    • In-situ evidence for uranium immobilization and remobilization
    • Senko, J.M., Istok, J.D., Suflita, J.M., and Krumholz, L.R. (2002) In-situ evidence for uranium immobilization and remobilization. Environ Sci Technol 36: 1491-1496.
    • (2002) Environ Sci Technol , vol.36 , pp. 1491-1496
    • Senko, J.M.1    Istok, J.D.2    Suflita, J.M.3    Krumholz, L.R.4
  • 20
    • 0026108714 scopus 로고
    • Nylon production: An unknown source of atmospheric nitrous oxide
    • Thiemens, M.H., and Trogler, W.C. (1991) Nylon production: an unknown source of atmospheric nitrous oxide. Science 251: 932-934.
    • (1991) Science , vol.251 , pp. 932-934
    • Thiemens, M.H.1    Trogler, W.C.2
  • 21
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G, and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 22
    • 0002137823 scopus 로고
    • Ecology of denitrification and dissimilatory nitrate reduction to ammonium
    • Zehnder, A.J.B., (ed.). New York: John Wiley and Sons
    • Tiedje, J.M. (1988) Ecology of denitrification and dissimilatory nitrate reduction to ammonium. In Biology of Anaerobic Microorganisms Zehnder, A.J.B., (ed.). New York: John Wiley and Sons, pp. 179-244.
    • (1988) Biology of Anaerobic Microorganisms , pp. 179-244
    • Tiedje, J.M.1
  • 23
    • 0035656126 scopus 로고    scopus 로고
    • Development and evaluation of functional gene arrays for detection of selected genes in the environment
    • Wu, L., Thompson, D.K., Li, G., Hurt, R.A., Tiedje, J.M., and Zhou, J. (2001) Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl Environ Microbiol 67: 578-5790.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 578-5790
    • Wu, L.1    Thompson, D.K.2    Li, G.3    Hurt, R.A.4    Tiedje, J.M.5    Zhou, J.6
  • 24
    • 0030070838 scopus 로고    scopus 로고
    • DNA recovery from soils of diverse composition
    • Zhou, J., Burns, M.A., and Tiedje, J.M. (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62: 316-322.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 316-322
    • Zhou, J.1    Burns, M.A.2    Tiedje, J.M.3
  • 25
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou, J., Davey, M.E., Figueras, J.B., Rivkina, E., Gilichinsky, D., and Tiedje, J.M. (1997) Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiol 143: 3913-3919.
    • (1997) Microbiol , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6
  • 27
    • 0000266664 scopus 로고
    • The denitrifying prokaryotes
    • Balows, A., Truper H.G., Dworkin M., Harder W. and Schleifer K.H., (eds). New York: Springer-Verlag
    • Zumft, W.G. (1992) The denitrifying prokaryotes. In The Prokaryotes. A Handbook on the Biology of Bacteria. Balows, A., Truper H.G., Dworkin M., Harder W. and Schleifer K.H., (eds). New York: Springer-Verlag, pp. 554-582.
    • (1992) The Prokaryotes. A Handbook on the Biology of Bacteria , pp. 554-582
    • Zumft, W.G.1
  • 28
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft, W.G. (1997) Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 61: 533-616.
    • (1997) Microbiol Mol Biol Rev , vol.61 , pp. 533-616
    • Zumft, W.G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.