메뉴 건너뛰기




Volumn 68, Issue 12, 2002, Pages 6121-6128

Molecular analysis of the nitrate-reducing community from unplanted and maize-planted soils

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; DNA; ENZYMES; GENETIC ENGINEERING; MOLECULAR DYNAMICS; NITRATES; SOILS;

EID: 0036946694     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.68.12.6121-6128.2002     Document Type: Article
Times cited : (188)

References (32)
  • 2
    • 0028811652 scopus 로고
    • Enzymes and associated electron transports systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions
    • Berks, B. C., S. J. Ferguson, J. W. B. Moir, and D. J. D. Richardson. 1995. Enzymes and associated electron transports systems that catalyse the respiratory reduction of nitrogen oxides and oxyanions. Biochim. Biophys. Acta 1232:97-173.
    • (1995) Biochim. Biophys. Acta , vol.1232 , pp. 97-173
    • Berks, B.C.1    Ferguson, S.J.2    Moir, J.W.B.3    Richardson, D.J.D.4
  • 3
    • 0035319656 scopus 로고    scopus 로고
    • Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
    • Braker, G., H. L. Ayala-del-Rio, A. H. Devol, A. Fesefeldt, and J. M. Tiedje. 2001. Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl. Environ. Microbiol. 67:1893-1901.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 1893-1901
    • Braker, G.1    Ayala-del-Rio, H.L.2    Devol, A.H.3    Fesefeldt, A.4    Tiedje, J.M.5
  • 4
    • 0003081562 scopus 로고
    • Effect of transient oxic conditions on the composition of the nitrate-reducing community from the rhizosphere of Typha angustipholia
    • Brunel, B., J. D. Janse, H. J. Laanbroek, and J. D. Woldendorp. 1992. Effect of transient oxic conditions on the composition of the nitrate-reducing community from the rhizosphere of Typha angustipholia. Microbiol. Ecol. 24:51-61.
    • (1992) Microbiol. Ecol. , vol.24 , pp. 51-61
    • Brunel, B.1    Janse, J.D.2    Laanbroek, H.J.3    Woldendorp, J.D.4
  • 5
    • 0033015223 scopus 로고    scopus 로고
    • Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils
    • Bruns, M. A., J. R. Stephen, G. A. Kowalchuk, J. I. Prosser, and E. A. Paul. 1999. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils. Appl. Environ. Microbiol. 65:2994-3000.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 2994-3000
    • Bruns, M.A.1    Stephen, J.R.2    Kowalchuk, G.A.3    Prosser, J.I.4    Paul, E.A.5
  • 6
    • 0033741146 scopus 로고    scopus 로고
    • 16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils
    • Cheneby, D., L. Philippot, A. Hartmann, C. Henault, and J. C. Germon. 2000. 16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils. FEMS Microbiol. Ecol. 34:121-128.
    • (2000) FEMS Microbiol. Ecol. , vol.34 , pp. 121-128
    • Cheneby, D.1    Philippot, L.2    Hartmann, A.3    Henault, C.4    Germon, J.C.5
  • 8
    • 0031791939 scopus 로고    scopus 로고
    • Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns
    • Duineveld, B. M., A. S. Rosado, J. D. van Elsas, and J. A. van Veen. 1998. Analysis of the dynamics of bacterial communities in the rhizosphere of the chrysanthemum via denaturing gradient gel electrophoresis and substrate utilization patterns. Appl. Environ. Microbiol. 64:4950-4957.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4950-4957
    • Duineveld, B.M.1    Rosado, A.S.2    Van Elsas, J.D.3    Van Veen, J.A.4
  • 9
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., P. E. Smouse, and J. M. Quattro. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 134:479-494.
    • (1992) Genetics , vol.134 , pp. 479-494
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 10
    • 0033835145 scopus 로고    scopus 로고
    • Role of respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize
    • Ghiglione, J. F., F. Gourbiere, P. Potier, L. Philippot, and R. Lensi. 2000. Role of respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize. Appl. Environ. Microbiol. 66:4012-4016.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4012-4016
    • Ghiglione, J.F.1    Gourbiere, F.2    Potier, P.3    Philippot, L.4    Lensi, R.5
  • 11
    • 0033975035 scopus 로고    scopus 로고
    • Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA
    • Gregory, L. G., A. Karakas-Sen, D. J. Richardson, and S. Spiro. 2000. Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA. FEMS Microbiol. Lett. 183:275-279.
    • (2000) FEMS Microbiol. Lett. , vol.183 , pp. 275-279
    • Gregory, L.G.1    Karakas-Sen, A.2    Richardson, D.J.3    Spiro, S.4
  • 13
    • 0034009793 scopus 로고    scopus 로고
    • Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands)
    • Kowalchuk, G. A., A. W. Stienstra, G. H. Heilig, J. R. Stephen, and J. W. Woldendorp. 2000. Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands), FEMS Microbiol. Ecol. 31:207-215.
    • (2000) FEMS Microbiol. Ecol. , vol.31 , pp. 207-215
    • Kowalchuk, G.A.1    Stienstra, A.W.2    Heilig, G.H.3    Stephen, J.R.4    Woldendorp, J.W.5
  • 14
    • 0030944380 scopus 로고    scopus 로고
    • Denitrification with and without maize plant (Zea mays L.) under irrigated field conditions
    • Mahmood, T., R. Ali, K. A. Malik, and S. R. A. Shamsi. 1997. Denitrification with and without maize plant (Zea mays L.) under irrigated field conditions. Biol. Fertil. Soils 24:323-328.
    • (1997) Biol. Fertil. Soils , vol.24 , pp. 323-328
    • Mahmood, T.1    Ali, R.2    Malik, K.A.3    Shamsi, S.R.A.4
  • 15
    • 0025199026 scopus 로고
    • Fluctuations in the fluorescent pseudomonad and actinomycete populations of rhizosphere and rhizoplane during the growth of spring wheat
    • Miller, H. J., E. Liljeroth, G. Henken, and J. A. van Veen. 1990. Fluctuations in the fluorescent pseudomonad and actinomycete populations of rhizosphere and rhizoplane during the growth of spring wheat. Can. J. Microbiol. 36:254-258.
    • (1990) Can. J. Microbiol. , vol.36 , pp. 254-258
    • Miller, H.J.1    Liljeroth, E.2    Henken, G.3    Van Veen, J.A.4
  • 16
    • 0032704710 scopus 로고    scopus 로고
    • Prokaryotic nitrate reduction: Molecular properties and functional distinction among bacterial nitrate reductases
    • Moreno-Vivian, C., P. Cabello, M. Martinez-Luque, R. Blasco, and F. Castillo. 1999. Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases. J. Bacteriol. 181:6573-6584.
    • (1999) J. Bacteriol. , vol.181 , pp. 6573-6584
    • Moreno-Vivian, C.1    Cabello, P.2    Martinez-Luque, M.3    Blasco, R.4    Castillo, F.5
  • 17
    • 0030620177 scopus 로고    scopus 로고
    • Effects of nitrate availability and the presence of Glyceria maxima on the composition and activity of the dissimilatory nitrate-reducing bacteria community
    • Nijburg, J., M. J. L. Coolen, S. Gerards, P. J. A. K. Gunnewiek, and H. J. Lannbroek. 1997. Effects of nitrate availability and the presence of Glyceria maxima on the composition and activity of the dissimilatory nitrate-reducing bacteria community. Appl. Environ. Microbiol. 63:931-937.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 931-937
    • Nijburg, J.1    Coolen, M.J.L.2    Gerards, S.3    Gunnewiek, P.J.A.K.4    Lannbroek, H.J.5
  • 18
    • 0342868796 scopus 로고    scopus 로고
    • Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition
    • Nusslein, K., and J. M. Tiedje. 1998. Characterization of the dominant and rare members of a young Hawaiian soil bacterial community with small-subunit ribosomal DNA amplified from DNA fractionated on the basis of its guanine and cytosine composition. Appl. Environ. Microbiol. 64:1283-1289.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1283-1289
    • Nusslein, K.1    Tiedje, J.M.2
  • 19
    • 17644436677 scopus 로고    scopus 로고
    • Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
    • Nusslein, K., and J. M. Tiedje. 1999. Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl. Environ. Microbiol. 65:3622-3626.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3622-3626
    • Nusslein, K.1    Tiedje, J.M.2
  • 20
    • 0037184270 scopus 로고    scopus 로고
    • Denitrifying genes in bacterial and archeal genomes
    • Philippot, L. 2002. Denitrifying genes in bacterial and archeal genomes. Biochim. Biophys. Acta 1577:355.
    • (2002) Biochim. Biophys. Acta , vol.1577 , pp. 355
    • Philippot, L.1
  • 21
    • 0028927036 scopus 로고
    • Use of Tn5 mutants to assess the role of the dissimilatory nitrite reductase in the competitive abilities of two Pseudomonas strains in soil
    • Philippot, L., C. Clays-Josserand, and R. Lensi. 1995. Use of Tn5 mutants to assess the role of the dissimilatory nitrite reductase in the competitive abilities of two Pseudomonas strains in soil. Appl. Environ. Microbiol. 61:1426-1430.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1426-1430
    • Philippot, L.1    Clays-Josserand, C.2    Lensi, R.3
  • 22
    • 0033040979 scopus 로고    scopus 로고
    • Dissimilatory nitrate reductases in bacteria
    • Philippot, L., and O. Hojberg. 1999. Dissimilatory nitrate reductases in bacteria. Biochim. Biophys. Acta 1446:1-23.
    • (1999) Biochim. Biophys. Acta , vol.1446 , pp. 1-23
    • Philippot, L.1    Hojberg, O.2
  • 23
    • 34250090633 scopus 로고
    • Effect of wheat roots on denitrification at varying soil air-filled porosity and organic-carbon content
    • Prade, K., and G. Trolldenier. 1988. Effect of wheat roots on denitrification at varying soil air-filled porosity and organic-carbon content. Biol. Fertil. Soils 7:1-6.
    • (1988) Biol. Fertil. Soils , vol.7 , pp. 1-6
    • Prade, K.1    Trolldenier, G.2
  • 25
    • 0024525394 scopus 로고
    • Denitrification and nitrate-reducing bacterial populations
    • Shirey, J. J., and A. J. Sextone. 1989. Denitrification and nitrate-reducing bacterial populations. FEMS Microbiol. Ecol. 62:59-70.
    • (1989) FEMS Microbiol. Ecol. , vol.62 , pp. 59-70
    • Shirey, J.J.1    Sextone, A.J.2
  • 26
    • 33344464667 scopus 로고
    • Measurement of diversity
    • Simpson, E. H. 1949. Measurement of diversity. Nature 163:688.
    • (1949) Nature , vol.163 , pp. 688
    • Simpson, E.H.1
  • 27
    • 0035487320 scopus 로고    scopus 로고
    • Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: Plant-dependent enrichment and seasonal shifts revealed
    • Smalla, K., G. Wieland, A. Buchner, A. Zock, J. Parzy, S. Kaiser, N. Roskot, H. Heuer, and G. Berg. 2001. Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed. Appl. Environ. Microbiol. 67:4742-4751.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4742-4751
    • Smalla, K.1    Wieland, G.2    Buchner, A.3    Zock, A.4    Parzy, J.5    Kaiser, S.6    Roskot, N.7    Heuer, H.8    Berg, G.9
  • 28
    • 0001660691 scopus 로고
    • The effect of roots on soil denitrification
    • Smith, S., and J. M. Tiedje. 1979. The effect of roots on soil denitrification. Soil Sci. Soc. Am. J. 43:951-955.
    • (1979) Soil Sci. Soc. Am. J. , vol.43 , pp. 951-955
    • Smith, S.1    Tiedje, J.M.2
  • 29
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24:4876-4882.
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 30
    • 0002137823 scopus 로고
    • Ecology of denitrification and dissimilatory nitrate reduction to ammonium
    • A. J. Zehnder (ed.). John Wiley & Sons, Inc., New York, N.Y.
    • Tiedje, J. M. 1988. Ecology of denitrification and dissimilatory nitrate reduction to ammonium, p. 179-244. In A. J. Zehnder (ed.), Biology of anaerobic microorganisms. John Wiley & Sons, Inc., New York, N.Y.
    • (1988) Biology of Anaerobic Microorganisms , pp. 179-244
    • Tiedje, J.M.1
  • 31
    • 84988168742 scopus 로고
    • Plant nutritional and soil factors in relation to microbial activity in the rhizosphere, with particular emphasis on denitrification
    • Trolldenier, G. 1988. Plant nutritional and soil factors in relation to microbial activity in the rhizosphere, with particular emphasis on denitrification. Z. Pfanzenernähr. Boden. 152:223-230.
    • (1988) Z. Pfanzenernähr. Boden. , vol.152 , pp. 223-230
    • Trolldenier, G.1
  • 32
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA
    • Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
    • (1997) Microbiology , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.