메뉴 건너뛰기




Volumn 69, Issue 6, 2003, Pages 3476-3483

Nitric oxide reductase (norB) genes from pure cultures and environmental samples

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CELL CULTURE; CLONING; DENITRIFICATION; ENZYMES; GENES;

EID: 0037978972     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.69.6.3476-3483.2003     Document Type: Article
Times cited : (235)

References (53)
  • 1
    • 0028946836 scopus 로고
    • The structural genes for nitric oxide reductase from Pseudomonas aeruginosa
    • Arai, H., Y. Igarashi, and T. Kodama. 1995. The structural genes for nitric oxide reductase from Pseudomonas aeruginosa. Biochim. Biophys. Acta 1261:279-284.
    • (1995) Biochim. Biophys. Acta , vol.1261 , pp. 279-284
    • Arai, H.1    Igarashi, Y.2    Kodama, T.3
  • 2
    • 0030984912 scopus 로고    scopus 로고
    • Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4
    • Bartnikas, T. B., I. E. Tosques, W. P. Laratta, J. Shi, and J. P. Shapleigh. 1997. Characterization of the nitric oxide reductase-encoding region in Rhodobacter sphaeroides 2.4. J. Bacteriol. 179:3534-3540.
    • (1997) J. Bacteriol. , vol.179 , pp. 3534-3540
    • Bartnikas, T.B.1    Tosques, I.E.2    Laratta, W.P.3    Shi, J.4    Shapleigh, J.P.5
  • 3
    • 0031687820 scopus 로고    scopus 로고
    • Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples
    • Braker, G., A. Fesefeldt, and K.-P. Witzel. 1998. Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples. Appl. Environ. Microbiol. 64:3769-3775.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3769-3775
    • Braker, G.1    Fesefeldt, A.2    Witzel, K.-P.3
  • 4
    • 0034016758 scopus 로고    scopus 로고
    • Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities
    • Braker, G., J. Zhou, L. Wu, A. H. Devol, and J. M. Tiedje. 2000. Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific Northwest marine sediment communities. Appl Environ. Microbiol. 66:2096-2104.
    • (2000) Appl Environ. Microbiol. , vol.66 , pp. 2096-2104
    • Braker, G.1    Zhou, J.2    Wu, L.3    Devol, A.H.4    Tiedje, J.M.5
  • 5
    • 0036154311 scopus 로고    scopus 로고
    • Characterization of the norB gene, encoding nitric oxide reductase, in the nondenitrifying cyanobacterium Synechocystis sp. strain PCC6803
    • Büsch, A., B. Friedrich, and R. Cramm. 2002. Characterization of the norB gene, encoding nitric oxide reductase, in the nondenitrifying cyanobacterium Synechocystis sp. strain PCC6803. Appl. Environ. Microbiol. 68:668-672.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 668-672
    • Büsch, A.1    Friedrich, B.2    Cramm, R.3
  • 6
    • 0035190144 scopus 로고    scopus 로고
    • Two conserved glutamates in the bacterial nitric oxide reductase are essential for activity but not assembly of the enzyme
    • Butland, G., S. Spiro, N. J. Watmough, and D. J. Richardson. 2001. Two conserved glutamates in the bacterial nitric oxide reductase are essential for activity but not assembly of the enzyme. J. Bacteriol. 183:189-199.
    • (2001) J. Bacteriol. , vol.183 , pp. 189-199
    • Butland, G.1    Spiro, S.2    Watmough, N.J.3    Richardson, D.J.4
  • 9
    • 0032836317 scopus 로고    scopus 로고
    • Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16
    • Cramm, R., A. Pohlmann, and B. Friedrich. 1999. Purification and characterization of the single-component nitric oxide reductase from Ralstonia eutropha H16. FEBS Lett. 460:6-10.
    • (1999) FEBS Lett. , vol.460 , pp. 6-10
    • Cramm, R.1    Pohlmann, A.2    Friedrich, B.3
  • 10
    • 0030714062 scopus 로고    scopus 로고
    • Two isofunctional nitric oxide reductases in Alcaligenes eutrophus H16
    • Cramm, R., R. A. Siddiqui, and B. Friedrich. 1997. Two isofunctional nitric oxide reductases in Alcaligenes eutrophus H16. J. Bacteriol. 179:6769-6777.
    • (1997) J. Bacteriol. , vol.179 , pp. 6769-6777
    • Cramm, R.1    Siddiqui, R.A.2    Friedrich, B.3
  • 11
    • 0032923887 scopus 로고    scopus 로고
    • Bacterial nitric oxide synthesis
    • Cutruzzolà, F. 1999. Bacterial nitric oxide synthesis. Biochim. Biophys. Acta 1411:231-249.
    • (1999) Biochim. Biophys. Acta , vol.1411 , pp. 231-249
    • Cutruzzolà, F.1
  • 13
    • 0028105839 scopus 로고
    • Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats
    • Fries, M. R., J. Zhou, J. Chee-Sanford, and J. M. Tiedje. 1994. Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats. Appl. Environ. Microbiol. 60:2802-2810.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 2802-2810
    • Fries, M.R.1    Zhou, J.2    Chee-Sanford, J.3    Tiedje, J.M.4
  • 14
    • 0027064523 scopus 로고
    • Mutagenesis and chromosome mobilization in Hyphomicrobium facilis B-522
    • Gliesche, C. G., and P. Hirsch. 1992. Mutagenesis and chromosome mobilization in Hyphomicrobium facilis B-522. Can. J. Microbiol. 38:1167-1174.
    • (1992) Can. J. Microbiol. , vol.38 , pp. 1167-1174
    • Gliesche, C.G.1    Hirsch, P.2
  • 15
    • 0031041291 scopus 로고    scopus 로고
    • A rapid method for creating species-specific gene probes for methylotrophic bacteria
    • Gliesche, C. G., M. Menzel, and A. Fesefeldt. 1997. A rapid method for creating species-specific gene probes for methylotrophic bacteria. J. Microbiol. Methods 28:25-34.
    • (1997) J. Microbiol. Methods , vol.28 , pp. 25-34
    • Gliesche, C.G.1    Menzel, M.2    Fesefeldt, A.3
  • 16
    • 0033975035 scopus 로고    scopus 로고
    • Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA
    • Gregory, L. G., A. Karakas-Sen, D. J. Richardson, and S. Spiro. 2000. Detection of genes for membrane-bound nitrate reductase in nitrate-respiring bacteria and in community DNA. FEMS Microbiol. Lett. 183:275-279.
    • (2000) FEMS Microbiol. Lett. , vol.183 , pp. 275-279
    • Gregory, L.G.1    Karakas-Sen, A.2    Richardson, D.J.3    Spiro, S.4
  • 17
    • 0032964425 scopus 로고    scopus 로고
    • PCR detection of genes encoding nitrite reductases in denitrifying bacteria
    • Hallin, S., and P.-E. Lindgren. 1999. PCR detection of genes encoding nitrite reductases in denitrifying bacteria. Appl. Environ. Microbiol. 65:1652-1657.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1652-1657
    • Hallin, S.1    Lindgren, P.-E.2
  • 19
    • 0033850293 scopus 로고    scopus 로고
    • Gonococcal nitric oxide reductase is encoded by a single gene, norB, which is required for anaerobic growth and is induced by nitric oxide
    • Householder, T. C., E. M. Fozo, J. A. Cardinale, and V. L. Clark. 2000. Gonococcal nitric oxide reductase is encoded by a single gene, norB, which is required for anaerobic growth and is induced by nitric oxide. Infect. Immun. 68:5241-5246.
    • (2000) Infect. Immun. , vol.68 , pp. 5241-5246
    • Householder, T.C.1    Fozo, E.M.2    Cardinale, J.A.3    Clark, V.L.4
  • 21
    • 0000144963 scopus 로고
    • Composition of sea water
    • Lyman, J., and R. H. Fleming. 1940. Composition of sea water. J. Mar. Res. 3:134-167.
    • (1940) J. Mar. Res. , vol.3 , pp. 134-167
    • Lyman, J.1    Fleming, R.H.2
  • 22
    • 0033214084 scopus 로고    scopus 로고
    • Studies on nitric oxide (NO) formation by the green alga Scenedesmus obliquus and the diazotrophic cyanobacterium Anabaena doliolum
    • Mallick, N., L. C. Rai, F. H. Mohn, and C. J. Soeder. 1999. Studies on nitric oxide (NO) formation by the green alga Scenedesmus obliquus and the diazotrophic cyanobacterium Anabaena doliolum. Chemosphere 39:1601-1610.
    • (1999) Chemosphere , vol.39 , pp. 1601-1610
    • Mallick, N.1    Rai, L.C.2    Mohn, F.H.3    Soeder, C.J.4
  • 23
    • 0034915145 scopus 로고    scopus 로고
    • The nir, nor, and nos denitrification genes are dispersed over the Bradyrhizobium japonicum chromosome
    • Mesa, S., M. Göttfert, and E. J. Bedmar. 2001. The nir, nor, and nos denitrification genes are dispersed over the Bradyrhizobium japonicum chromosome. Arch. Microbiol. 176:136-142.
    • (2001) Arch. Microbiol. , vol.176 , pp. 136-142
    • Mesa, S.1    Göttfert, M.2    Bedmar, E.J.3
  • 26
    • 0034110176 scopus 로고    scopus 로고
    • The relationship of nitrate reducing bacteria on the basis of narH gene sequences and comparison of narH and 16S rDNA based phylogeny
    • Petri, R., and J. Imhoff. 2000. The relationship of nitrate reducing bacteria on the basis of narH gene sequences and comparison of narH and 16S rDNA based phylogeny. Syst. Appl. Microbiol. 23:47-57.
    • (2000) Syst. Appl. Microbiol. , vol.23 , pp. 47-57
    • Petri, R.1    Imhoff, J.2
  • 27
    • 0036203309 scopus 로고    scopus 로고
    • Diversity of nitrite reductase (nirK and nitS) gene fragments in forested upland and wetland soils
    • Priemé, A., G. Braker, and J. M. Tiedje. 2002. Diversity of nitrite reductase (nirK and nitS) gene fragments in forested upland and wetland soils. Appl. Environ. Microbiol. 68:1893-1900.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 1893-1900
    • Priemé, A.1    Braker, G.2    Tiedje, J.M.3
  • 28
    • 0029759760 scopus 로고    scopus 로고
    • Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
    • Purdy, K. J., T. M. Embley, S. Takii, and D. B. Nedwell. 1996. Rapid extraction of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl. Environ. Microbiol. 62:3905-3907.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 3905-3907
    • Purdy, K.J.1    Embley, T.M.2    Takii, S.3    Nedwell, D.B.4
  • 29
    • 0034153610 scopus 로고    scopus 로고
    • Bacterial respiration: A flexible process for a changing environment
    • Richardson, D. J. 2000. Bacterial respiration: a flexible process for a changing environment. Microbiology 146:551-571.
    • (2000) Microbiology , vol.146 , pp. 551-571
    • Richardson, D.J.1
  • 30
    • 0032512542 scopus 로고    scopus 로고
    • Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structural model relevant to cytochrome oxidase
    • Sakurai, N., and T. Sakurai. 1998. Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structural model relevant to cytochrome oxidase. Biochem. Biophys. Res. Commun. 243:400-406.
    • (1998) Biochem. Biophys. Res. Commun. , vol.243 , pp. 400-406
    • Sakurai, N.1    Sakurai, T.2
  • 32
    • 0028226882 scopus 로고
    • Cytochrome oxidase evolved by tinkering with denitrification enzymes
    • Saraste, M., and J. Castresana. 1994. Cytochrome oxidase evolved by tinkering with denitrification enzymes. FEBS Lett. 341:1-4.
    • (1994) FEBS Lett. , vol.341 , pp. 1-4
    • Saraste, M.1    Castresana, J.2
  • 33
    • 0016982492 scopus 로고
    • Rhodopseudomonas sphaeroides forma sp. denitrificans, a denitrifying strain as a subspecies of Rhodo-pseudomonas sphaeroides
    • Satoh, T., Y. Hoshino, and H. Kitamura. 1976. Rhodopseudomonas sphaeroides forma sp. denitrificans, a denitrifying strain as a subspecies of Rhodo-pseudomonas sphaeroides. Arch. Microbiol. 108:265-269.
    • (1976) Arch. Microbiol. , vol.108 , pp. 265-269
    • Satoh, T.1    Hoshino, Y.2    Kitamura, H.3
  • 34
    • 0032080514 scopus 로고    scopus 로고
    • Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments
    • Scala, D. J., and L. J. Kerkhof. 1998. Nitrous oxide reductase (nosZ) gene-specific PCR primers for detection of denitrifiers and three nosZ genes from marine sediments. FEMS Microbiol. Lett. 162:61-68.
    • (1998) FEMS Microbiol. Lett. , vol.162 , pp. 61-68
    • Scala, D.J.1    Kerkhof, L.J.2
  • 35
    • 0032933229 scopus 로고    scopus 로고
    • Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments
    • Scala, D. J., and L. J. Kerkhof. 1999. Diversity of nitrous oxide reductase (nosZ) genes in continental shelf sediments. Appl. Environ. Microbiol. 65:1681-1687.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1681-1687
    • Scala, D.J.1    Kerkhof, L.J.2
  • 37
    • 0025737114 scopus 로고
    • Denitrification by the fungus Fusarium oxysporum and involvement of cytochrome P-450 in the respiratory nitrite reduction
    • Shoun, H., and T. Tanimoto. 1991. Denitrification by the fungus Fusarium oxysporum and involvement of cytochrome P-450 in the respiratory nitrite reduction. J. Biol. Chem. 17:1078-1082.
    • (1991) J. Biol. Chem. , vol.17 , pp. 1078-1082
    • Shoun, H.1    Tanimoto, T.2
  • 38
    • 0014285422 scopus 로고
    • Prosthecomicrobium and Ancalomicrobium, new prosthecate freshwater bacteria
    • Staley, J. T. 1968. Prosthecomicrobium and Ancalomicrobium, new prosthecate freshwater bacteria. J. Bacteriol. 95:1921-1944.
    • (1968) J. Bacteriol. , vol.95 , pp. 1921-1944
    • Staley, J.T.1
  • 39
    • 0033572625 scopus 로고    scopus 로고
    • Cytochrome P450nor, a novel class of mitochondrial cytochrome P450 involved in nitrate respiration in the fungus Fusarium oxysporum
    • Takaya, N., S. Suzuki, S. Kuwazaki, H. Shoun, F. Maruo, M. Yamaguchi, and K. Takeo. 1999. Cytochrome P450nor, a novel class of mitochondrial cytochrome P450 involved in nitrate respiration in the fungus Fusarium oxysporum. Arch. Biochem. Biophys. 372:340-346.
    • (1999) Arch. Biochem. Biophys. , vol.372 , pp. 340-346
    • Takaya, N.1    Suzuki, S.2    Kuwazaki, S.3    Shoun, H.4    Maruo, F.5    Yamaguchi, M.6    Takeo, K.7
  • 41
    • 0028083666 scopus 로고
    • The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase
    • van der Oost, J., A. P. de Boer, J. W. de Gier, W. G. Zumft, A. H. Stouthamer, and R. J. van Spanning. 1994. The heme-copper oxidase family consists of three distinct types of terminal oxidases and is related to nitric oxide reductase. FEMS Microbiol. Lett. 121:1-9.
    • (1994) FEMS Microbiol. Lett. , vol.121 , pp. 1-9
    • Van der Oost, J.1    De Boer, A.P.2    De Gier, J.W.3    Zumft, W.G.4    Stouthamer, A.H.5    Van Spanning, R.J.6
  • 42
    • 0002497474 scopus 로고
    • Extraction of microbial community DNA from soils
    • A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.). Kluwer Academic Publishers, Dordrecht, The Netherlands
    • van Elsas, J. D., and K. Smalla. 1995. Extraction of microbial community DNA from soils, p. 1.3.3/1-1.3.3/11. In A. D. L. Akkermans, J. D. van Elsas, and F. J. de Bruijn (ed.), Molecular microbial ecology manual. Kluwer Academic Publishers, Dordrecht, The Netherlands.
    • (1995) Molecular Microbial Ecology Manual , pp. 1331-13311
    • Van Elsas, J.D.1    Smalla, K.2
  • 45
    • 0033952545 scopus 로고    scopus 로고
    • Simultaneous production of nitric oxide and peroxynitrite by plant nitrate reductase: In vitro evidence for the NR-dependent formation of active nitrogen species
    • Yamasaki, H., and Y. Sakihama. 2000. Simultaneous production of nitric oxide and peroxynitrite by plant nitrate reductase: in vitro evidence for the NR-dependent formation of active nitrogen species. FEBS Lett. 468:89-92.
    • (2000) FEBS Lett. , vol.468 , pp. 89-92
    • Yamasaki, H.1    Sakihama, Y.2
  • 46
    • 0026667697 scopus 로고
    • Characterization of Tn5 mutants deficient in dissimilatory nitrite reduction in Pseudomonas sp. strain G-179, which contains a copper nitrite reductase
    • Ye, R. W., B. A. Averill, and J. M. Tiedje. 1992. Characterization of Tn5 mutants deficient in dissimilatory nitrite reduction in Pseudomonas sp. strain G-179, which contains a copper nitrite reductase. J. Bacteriol. 174:6653-6658.
    • (1992) J. Bacteriol. , vol.174 , pp. 6653-6658
    • Ye, R.W.1    Averill, B.A.2    Tiedje, J.M.3
  • 47
    • 0027531490 scopus 로고
    • Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers
    • Ye, R. W., M. R. Fries, S. G. Bezborodnikov, B. A. Averill, and J. M. Tiedje. 1993. Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers. Appl. Environ. Microbiol. 59:250-254.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 250-254
    • Ye, R.W.1    Fries, M.R.2    Bezborodnikov, S.G.3    Averill, B.A.4    Tiedje, J.M.5
  • 48
    • 0029031784 scopus 로고
    • Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov.
    • Zhou, J., M. R. Fries, J. C. Chee-Sanford, and J. M. Tiedje. 1995. Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. Int. J. Syst. Bacteriol. 45:500-506.
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 500-506
    • Zhou, J.1    Fries, M.R.2    Chee-Sanford, J.C.3    Tiedje, J.M.4
  • 49
    • 0031436948 scopus 로고    scopus 로고
    • Phylogenetic diversity of a bacterial commmunity determined from Siberian tundra soil DNA
    • Zhou, J., M. E. Davey, J. B. Figueras, E. Rivkina, D. Gilichinsky, and J. M. Tiedje. 1997. Phylogenetic diversity of a bacterial commmunity determined from Siberian tundra soil DNA. Microbiology 143:3913-3919.
    • (1997) Microbiology , vol.143 , pp. 3913-3919
    • Zhou, J.1    Davey, M.E.2    Figueras, J.B.3    Rivkina, E.4    Gilichinsky, D.5    Tiedje, J.M.6
  • 50
    • 0031456471 scopus 로고    scopus 로고
    • Cell biology and molecular basis of denitrification
    • Zumft, W. G. 1997. Cell biology and molecular basis of denitrification. Microbiol. Mol. Biol. Rev. 61:533-616.
    • (1997) Microbiol. Mol. Biol. Rev. , vol.61 , pp. 533-616
    • Zumft, W.G.1
  • 51
    • 0031018503 scopus 로고    scopus 로고
    • Enzyme diversity and mosaic gene organization in denitrification
    • Zumft, W. G. 1997. Enzyme diversity and mosaic gene organization in denitrification. Antonie van Leeuwenhoek 71:43-58.
    • (1997) Antonie van Leeuwenhoek , vol.71 , pp. 43-58
    • Zumft, W.G.1
  • 52
    • 0028158048 scopus 로고
    • Nitric oxide reductase from Pseudomonas stutzeri
    • Zumft, W. G., C. Braun, and H. Cypers. 1994. Nitric oxide reductase from Pseudomonas stutzeri. Eur. J. Biochem. 219:481-490.
    • (1994) Eur. J. Biochem. , vol.219 , pp. 481-490
    • Zumft, W.G.1    Braun, C.2    Cypers, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.