-
1
-
-
63349085642
-
PSI-BLAST pseudocounts, the minimum description length principle
-
Altschul S.F., Gertz E.M., Agarwala R., Schaffer A.A., Yu Y.K. PSI-BLAST pseudocounts, the minimum description length principle. Nucleic Acids Res. 2009, 37:815-824.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 815-824
-
-
Altschul, S.F.1
Gertz, E.M.2
Agarwala, R.3
Schaffer, A.A.4
Yu, Y.K.5
-
2
-
-
35549004515
-
Semiautomated improvement of RNA alignments
-
Andersen E.S., Lind-Thomsen A., Knudsen B., Kristensen S.E., Havgaard J.H., Torarinsson E., Larsen N., Zwieb C., Sestoft P., Kjems J., Gorodkin J. Semiautomated improvement of RNA alignments. RNA 2007, 13:1850-1859.
-
(2007)
RNA
, vol.13
, pp. 1850-1859
-
-
Andersen, E.S.1
Lind-Thomsen, A.2
Knudsen, B.3
Kristensen, S.E.4
Havgaard, J.H.5
Torarinsson, E.6
Larsen, N.7
Zwieb, C.8
Sestoft, P.9
Kjems, J.10
Gorodkin, J.11
-
3
-
-
62549152278
-
Positioning of subdomain IIId, apical loop of domain II of the hepatitis C IRES on the human 40S ribosome
-
Babaylova E., Graifer D., Malygin A., Stahl J., Shatsky I., Karpova G. Positioning of subdomain IIId, apical loop of domain II of the hepatitis C IRES on the human 40S ribosome. Nucleic Acids Res. 2009, 37:1141-1151.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1141-1151
-
-
Babaylova, E.1
Graifer, D.2
Malygin, A.3
Stahl, J.4
Shatsky, I.5
Karpova, G.6
-
4
-
-
0029398301
-
The clinical manifestations of bovine viral diarrhea infection
-
Baker J.C. The clinical manifestations of bovine viral diarrhea infection. Vet. Clin. North Am. Food Anim. Pract. 1995, 11:425-445.
-
(1995)
Vet. Clin. North Am. Food Anim. Pract.
, vol.11
, pp. 425-445
-
-
Baker, J.C.1
-
5
-
-
75549090056
-
GenBank
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Sayers E.W. GenBank. Nucleic Acids Res. 2009, 38:D46-51.
-
(2009)
Nucleic Acids Res.
, vol.38
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
6
-
-
78649426085
-
Crystal structure of the eukaryotic ribosome
-
Ben-Shem A., Jenner L., Yusupova G., Yusupov M. Crystal structure of the eukaryotic ribosome. Science 2010, 330:1203-1209.
-
(2010)
Science
, vol.330
, pp. 1203-1209
-
-
Ben-Shem, A.1
Jenner, L.2
Yusupova, G.3
Yusupov, M.4
-
7
-
-
0036616218
-
The protein data bank
-
Berman H.M., Battistuz T., Bhat T.N., Bluhm W.F., Bourne P.E., Burkhardt K., Feng Z., Gilliland G.L., Iype L., Jain S., Fagan P., Marvin J., Padilla D., Ravichandran V., Schneider B., Thanki N., Weissig H., Westbrook J.D., Zardecki C. The protein data bank. Acta Crystallogr. D: Biol. Crystallogr. 2002, 58:899-907.
-
(2002)
Acta Crystallogr. D: Biol. Crystallogr.
, vol.58
, pp. 899-907
-
-
Berman, H.M.1
Battistuz, T.2
Bhat, T.N.3
Bluhm, W.F.4
Bourne, P.E.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.L.8
Iype, L.9
Jain, S.10
Fagan, P.11
Marvin, J.12
Padilla, D.13
Ravichandran, V.14
Schneider, B.15
Thanki, N.16
Weissig, H.17
Westbrook, J.D.18
Zardecki, C.19
-
8
-
-
77955097370
-
The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit
-
Berry K.E., Waghray S., Doudna J.A. The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit. RNA 2010, 16:1559-1569.
-
(2010)
RNA
, vol.16
, pp. 1559-1569
-
-
Berry, K.E.1
Waghray, S.2
Doudna, J.A.3
-
9
-
-
27644484907
-
Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES
-
Boehringer D., Thermann R., Ostareck-Lederer A., Lewis J.D., Stark H. Structure of the hepatitis C virus IRES bound to the human 80S ribosome: remodeling of the HCV IRES. Structure 2005, 13:1695-1706.
-
(2005)
Structure
, vol.13
, pp. 1695-1706
-
-
Boehringer, D.1
Thermann, R.2
Ostareck-Lederer, A.3
Lewis, J.D.4
Stark, H.5
-
10
-
-
49349100603
-
RNA pseudoknots, the regulation of protein synthesis
-
Brierley I., Gilbert R.J.C., Pennell S. RNA pseudoknots, the regulation of protein synthesis. Biochem. Soc. Trans. 2008, 36:684-689.
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 684-689
-
-
Brierley, I.1
Gilbert, R.J.C.2
Pennell, S.3
-
11
-
-
0026717232
-
Nucleotide sequencing of 5',3' termini of bovine viral diarrhea virus by RNA ligation, PCR
-
Brock K.V., Deng R., Riblet S.M. Nucleotide sequencing of 5',3' termini of bovine viral diarrhea virus by RNA ligation, PCR. J. Virol Methods 1992, 38:39-46.
-
(1992)
J. Virol Methods
, vol.38
, pp. 39-46
-
-
Brock, K.V.1
Deng, R.2
Riblet, S.M.3
-
12
-
-
0026674719
-
Secondary structure of the 5' nontranslated regions of hepatitis C virus, pestivirus genomic RNAs
-
Brown E.A., Zhang H., Ping L.H., Lemon S.M. Secondary structure of the 5' nontranslated regions of hepatitis C virus, pestivirus genomic RNAs. Nucleic Acids Res. 1992, 20:5041-5045.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 5041-5045
-
-
Brown, E.A.1
Zhang, H.2
Ping, L.H.3
Lemon, S.M.4
-
13
-
-
0031567581
-
In vivo translational efficiency of different hepatitis C virus 5'-UTRs
-
Buratti E., Gerotto M., Pontisso P., Alberti A., Tisminetzky S.G., Baralle F.E. In vivo translational efficiency of different hepatitis C virus 5'-UTRs. FEBS Lett. 1997, 411:275-280.
-
(1997)
FEBS Lett.
, vol.411
, pp. 275-280
-
-
Buratti, E.1
Gerotto, M.2
Pontisso, P.3
Alberti, A.4
Tisminetzky, S.G.5
Baralle, F.E.6
-
14
-
-
0023664964
-
Structural conventions for group I introns
-
Burke J.M., Belfort M., Cech T.R., Davies R.W., Schweyen R.J., Shub D.A., Szostak J.W., Tabak H.F. Structural conventions for group I introns. Nucleic Acids Res. 1987, 15:7217-7221.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 7217-7221
-
-
Burke, J.M.1
Belfort, M.2
Cech, T.R.3
Davies, R.W.4
Schweyen, R.J.5
Shub, D.A.6
Szostak, J.W.7
Tabak, H.F.8
-
15
-
-
0032567087
-
Genetic analysis of the internal ribosome entry segment of bovine viral diarrhea virus
-
Chon S.K., Perez D.R., Donis R.O. Genetic analysis of the internal ribosome entry segment of bovine viral diarrhea virus. Virology 1998, 251:370-382.
-
(1998)
Virology
, vol.251
, pp. 370-382
-
-
Chon, S.K.1
Perez, D.R.2
Donis, R.O.3
-
16
-
-
0024094649
-
Comparisons of the pestivirus bovine viral diarrhoea virus with members of the flaviviridae
-
Collett M.S., Anderson D.K., Retzel E. Comparisons of the pestivirus bovine viral diarrhoea virus with members of the flaviviridae. J. Gen. Virol. 1988, 69(Pt 10):2637-2643.
-
(1988)
J. Gen. Virol.
, vol.69
, Issue.PART 10
, pp. 2637-2643
-
-
Collett, M.S.1
Anderson, D.K.2
Retzel, E.3
-
17
-
-
0024041479
-
Molecular cloning, nucleotide sequence of the pestivirus bovine viral diarrhea virus
-
Collett M.S., Larson R., Gold C., Strick D., Anderson D.K., Purchio A.F. Molecular cloning, nucleotide sequence of the pestivirus bovine viral diarrhea virus. Virology 1988, 165:191-199.
-
(1988)
Virology
, vol.165
, pp. 191-199
-
-
Collett, M.S.1
Larson, R.2
Gold, C.3
Strick, D.4
Anderson, D.K.5
Purchio, A.F.6
-
18
-
-
0036237498
-
A conserved RNA structure within the HCV IRES eIF3-binding site
-
Collier A.J., Gallego J., Klinck R., Cole P.T., Harris S.J., Harrison G.P., Aboul-Ela F., Varani G., Walker S. A conserved RNA structure within the HCV IRES eIF3-binding site. Nat. Struct. Biol. 2002, 9:375-380.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 375-380
-
-
Collier, A.J.1
Gallego, J.2
Klinck, R.3
Cole, P.T.4
Harris, S.J.5
Harrison, G.P.6
Aboul-Ela, F.7
Varani, G.8
Walker, S.9
-
19
-
-
2342566920
-
Targeting internal ribosome entry site (IRES)-mediated translation to block hepatitis C, other RNA viruses
-
Dasgupta A., Das S., Izumi R., Venkatesan A., Barat B. Targeting internal ribosome entry site (IRES)-mediated translation to block hepatitis C, other RNA viruses. FEMS Microbiol. Lett. 2004, 234:189-199.
-
(2004)
FEMS Microbiol. Lett.
, vol.234
, pp. 189-199
-
-
Dasgupta, A.1
Das, S.2
Izumi, R.3
Venkatesan, A.4
Barat, B.5
-
20
-
-
0027198295
-
Nucleotide sequence of the bovine viral diarrhoea virus Osloss stra comparison with related viruses identification of specific F D.N.A. probes in the 5' untranslated F region
-
De Moerlooze L., Lecomte C., Brown-Shimmer S., Schmetz D., Guiot C., Vandenbergh D., Allaer D., Rossius M., Chappuis G., Dina D., et al. Nucleotide sequence of the bovine viral diarrhoea virus Osloss stra comparison with related viruses identification of specific F D.N.A. probes in the 5' untranslated F region. J. Gen. Virol. 1993, 74(Pt. 7):1433-1438.
-
(1993)
J. Gen. Virol.
, vol.74
, Issue.PART 7
, pp. 1433-1438
-
-
De Moerlooze, L.1
Lecomte, C.2
Brown-Shimmer, S.3
Schmetz, D.4
Guiot, C.5
Vandenbergh, D.6
Allaer, D.7
Rossius, M.8
Chappuis, G.9
Dina, D.10
-
21
-
-
0027077918
-
Molecular cloning, nucleotide sequence of a pestivirus genome, noncytopathic bovine viral diarrhea virus strain SD-1
-
Deng R., Brock K.V. Molecular cloning, nucleotide sequence of a pestivirus genome, noncytopathic bovine viral diarrhea virus strain SD-1. Virology 1992, 191:867-869.
-
(1992)
Virology
, vol.191
, pp. 867-869
-
-
Deng, R.1
Brock, K.V.2
-
22
-
-
0027245895
-
5', 3'-Untranslated regions of pestivirus genome: primary, secondary structure analyses
-
Deng R., Brock K.V. 5', 3'-Untranslated regions of pestivirus genome: primary, secondary structure analyses. Nucleic Acids Res. 1993, 21:1949-1957.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 1949-1957
-
-
Deng, R.1
Brock, K.V.2
-
23
-
-
33846064685
-
Functional architecture of HCV IRES domain II stabilized by divalent metal ions in the crystal, in solution
-
Dibrov S.M., Johnston-Cox H., Weng Y.H., Hermann T. Functional architecture of HCV IRES domain II stabilized by divalent metal ions in the crystal, in solution. Angew. Chem. Int. Ed. Engl. 2007, 46:226-229.
-
(2007)
Angew. Chem. Int. Ed. Engl.
, vol.46
, pp. 226-229
-
-
Dibrov, S.M.1
Johnston-Cox, H.2
Weng, Y.H.3
Hermann, T.4
-
24
-
-
70449717470
-
Conserved functional domains, a novel tertiary interaction near the pseudoknot drive translational activity of hepatitis C virus, hepatitis C virus-like internal ribosome entry sites
-
Easton L.E., Locker N., Lukavsky P.J. Conserved functional domains, a novel tertiary interaction near the pseudoknot drive translational activity of hepatitis C virus, hepatitis C virus-like internal ribosome entry sites. Nucleic Acids Res. 2009, 37:5537-5549.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5537-5549
-
-
Easton, L.E.1
Locker, N.2
Lukavsky, P.J.3
-
25
-
-
0036241453
-
Pestivirus internal ribosome entry site (IRES) structure, function: elements in the 5' untranslated region important for IRES function
-
Fletcher S.P., Jackson R.J. Pestivirus internal ribosome entry site (IRES) structure, function: elements in the 5' untranslated region important for IRES function. J. Virol. 2002, 76:5024-5033.
-
(2002)
J. Virol.
, vol.76
, pp. 5024-5033
-
-
Fletcher, S.P.1
Jackson, R.J.2
-
26
-
-
0034747214
-
Sequences in the 5' nontranslated region of hepatitis C virus required for RNA replication
-
Friebe P., Lohmann V., Krieger N., Bartenschlager R. Sequences in the 5' nontranslated region of hepatitis C virus required for RNA replication. J. Virol. 2001, 75:12047-12057.
-
(2001)
J. Virol.
, vol.75
, pp. 12047-12057
-
-
Friebe, P.1
Lohmann, V.2
Krieger, N.3
Bartenschlager, R.4
-
27
-
-
0344157332
-
Cis-acting RNA elements required for replication of bovine viral diarrhea virus-hepatitis C virus 5' nontranslated region chimeras
-
Frolov I., MvBride M.S., Rice C.M. Cis-acting RNA elements required for replication of bovine viral diarrhea virus-hepatitis C virus 5' nontranslated region chimeras. RNA 1998, 4:1418-1435.
-
(1998)
RNA
, vol.4
, pp. 1418-1435
-
-
Frolov, I.1
MvBride, M.S.2
Rice, C.M.3
-
28
-
-
0035877795
-
Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus
-
Fukushi S., Okada M., Stahl J., Kageyama T., Hoshino F.B., Katayama K. Ribosomal protein S5 interacts with the internal ribosomal entry site of hepatitis C virus. J. Biol. Chem. 2001, 276:20824-20826.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 20824-20826
-
-
Fukushi, S.1
Okada, M.2
Stahl, J.3
Kageyama, T.4
Hoshino, F.B.5
Katayama, K.6
-
29
-
-
58149191274
-
Rfam: updates to the RNA families database
-
Gardner P.P., Daub J., Tate J.G., Nawrocki E.P., Kolbe D.L., Lindgreen S., Wilkinson A.C., Finn R.D., Griffiths-Jones S., Eddy S.R., Bateman A. Rfam: updates to the RNA families database. Nucleic Acids Res. 2009, 37:D136-140.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
Wilkinson, A.C.7
Finn, R.D.8
Griffiths-Jones, S.9
Eddy, S.R.10
Bateman, A.11
-
30
-
-
0034899705
-
Semi-automated update, cleanup of structural RNA alignment databases
-
Gorodkin J., Zwieb C., Knudsen B. Semi-automated update, cleanup of structural RNA alignment databases. Bioinformatics 2001, 17:642-645.
-
(2001)
Bioinformatics
, vol.17
, pp. 642-645
-
-
Gorodkin, J.1
Zwieb, C.2
Knudsen, B.3
-
31
-
-
13844292703
-
Hepatitis C virus and the related bovine viral diarrhea virus considerably differ in the functional organization of the 5' non-translated region: implications for the viral life cycle
-
Grassmann C.W., Yu H., Isken O., Behrens S.-E. Hepatitis C virus and the related bovine viral diarrhea virus considerably differ in the functional organization of the 5' non-translated region: implications for the viral life cycle. Virology 2005, 333:349-366.
-
(2005)
Virology
, vol.333
, pp. 349-366
-
-
Grassmann, C.W.1
Yu, H.2
Isken, O.3
Behrens, S.-E.4
-
32
-
-
0037252684
-
Rfam: an RNA family database
-
Griffiths-Jones S., Bateman A., Marshall M., Khanna A., Eddy S.R. Rfam: an RNA family database. Nucleic Acids Res. 2003, 31:439-441.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
33
-
-
0002051540
-
BioEdit: a user-friendly biological sequence alignment analysis program for Windows 95/98/NT
-
Hall T.A. BioEdit: a user-friendly biological sequence alignment analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
34
-
-
23044475632
-
Common conventions for interchange, archiving of three-dimensional electron microscopy information in structural biology
-
Heymann J.B., Chagoyen M., Belnap D.M. Common conventions for interchange, archiving of three-dimensional electron microscopy information in structural biology. J. Struct. Biol. 2005, 151:196-207.
-
(2005)
J. Struct. Biol.
, vol.151
, pp. 196-207
-
-
Heymann, J.B.1
Chagoyen, M.2
Belnap, D.M.3
-
36
-
-
0033765890
-
Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation, IRES folding
-
Jubin R., Vantuno N.E., Kieft J.S., Murray M.G., Doudna J.A., Lau J.Y., Baroudy B.M. Hepatitis C virus internal ribosome entry site (IRES) stem loop IIId contains a phylogenetically conserved GGG triplet essential for translation, IRES folding. J. Virol. 2000, 74:10430-10437.
-
(2000)
J. Virol.
, vol.74
, pp. 10430-10437
-
-
Jubin, R.1
Vantuno, N.E.2
Kieft, J.S.3
Murray, M.G.4
Doudna, J.A.5
Lau, J.Y.6
Baroudy, B.M.7
-
37
-
-
0036237981
-
Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation
-
Kieft J.S., Zhou K., Grech A., Jubin R., Doudna J.A. Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation. Nat. Struct. Biol. 2002, 9:370-374.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 370-374
-
-
Kieft, J.S.1
Zhou, K.2
Grech, A.3
Jubin, R.4
Doudna, J.A.5
-
38
-
-
0035260658
-
Mechanism of ribosome recruitment by hepatitis C IRES RNA
-
Kieft J.S., Zhou K., Jubin R., Doudna J.A. Mechanism of ribosome recruitment by hepatitis C IRES RNA. RNA 2001, 7:194-206.
-
(2001)
RNA
, vol.7
, pp. 194-206
-
-
Kieft, J.S.1
Zhou, K.2
Jubin, R.3
Doudna, J.A.4
-
39
-
-
0033744387
-
A potential RNA drug target in the hepatitis C virus internal ribosomal entry site
-
Klinck R., Westhof E., Walker S., Afshar M., Collier A., Aboul-Ela F. A potential RNA drug target in the hepatitis C virus internal ribosomal entry site. RNA 2000, 6:1423-1431.
-
(2000)
RNA
, vol.6
, pp. 1423-1431
-
-
Klinck, R.1
Westhof, E.2
Walker, S.3
Afshar, M.4
Collier, A.5
Aboul-Ela, F.6
-
40
-
-
0036084366
-
SCOR: a structural classification of RNA database
-
Klosterman P.S., Tamura M., Holbrook S.R., Brenner S.E. SCOR: a structural classification of RNA database. Nucleic Acids Res. 2002, 30:294-392.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 294-392
-
-
Klosterman, P.S.1
Tamura, M.2
Holbrook, S.R.3
Brenner, S.E.4
-
41
-
-
0034542566
-
Ribosomal binding to the internal ribosomal entry site of classical swine fever virus
-
Kolupaeva V.G., Pestova T.V., Hellen C.U. Ribosomal binding to the internal ribosomal entry site of classical swine fever virus. RNA 2000, 6:1791-1807.
-
(2000)
RNA
, vol.6
, pp. 1791-1807
-
-
Kolupaeva, V.G.1
Pestova, T.V.2
Hellen, C.U.3
-
42
-
-
0033932448
-
An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
-
Kolupaeva V.G., Pestova T.V., Hellen C.U. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus. J. Virol. 2000, 74:6242-6250.
-
(2000)
J. Virol.
, vol.74
, pp. 6242-6250
-
-
Kolupaeva, V.G.1
Pestova, T.V.2
Hellen, C.U.3
-
43
-
-
0030790922
-
Genetic analysis of internal ribosomal entry site on hepatitis C virus RNA: implication for involvement of the highly ordered structure abd celltype-specific transacting factors
-
Komoshita N., Tsukiyama-Kohara K., Kohara M., Nomoto A. Genetic analysis of internal ribosomal entry site on hepatitis C virus RNA: implication for involvement of the highly ordered structure abd celltype-specific transacting factors. Virology 1997, 233:9-18.
-
(1997)
Virology
, vol.233
, pp. 9-18
-
-
Komoshita, N.1
Tsukiyama-Kohara, K.2
Kohara, M.3
Nomoto, A.4
-
44
-
-
72549101167
-
RPS25 is essential for translation initiation by the Dicistroviridae, hepatitis C viral IRESs
-
Landry D.M., Hertz M.I., Thompson S.R. RPS25 is essential for translation initiation by the Dicistroviridae, hepatitis C viral IRESs. Genes Dev. 2009, 23:2753-2764.
-
(2009)
Genes Dev.
, vol.23
, pp. 2753-2764
-
-
Landry, D.M.1
Hertz, M.I.2
Thompson, S.R.3
-
45
-
-
0025981510
-
SRP-RNA sequence alignment, secondary structure
-
Larsen N., Zwieb C. SRP-RNA sequence alignment, secondary structure. Nucleic Acids Res. 1991, 19:209-215.
-
(1991)
Nucleic Acids Res.
, vol.19
, pp. 209-215
-
-
Larsen, N.1
Zwieb, C.2
-
46
-
-
77953669481
-
Robust, generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain
-
Lavender C.A., Ding F., Dokholyan N.V., Weeks K.M. Robust, generic RNA modeling using inferred constraints: a structure for the hepatitis C virus IRES pseudoknot domain. Biochemistry 2010, 49:4931-4933.
-
(2010)
Biochemistry
, vol.49
, pp. 4931-4933
-
-
Lavender, C.A.1
Ding, F.2
Dokholyan, N.V.3
Weeks, K.M.4
-
47
-
-
34748873170
-
Flaviviridae: the viruses, their replication
-
Lohmann Williams & Wilkins, Philadelphia, PA
-
Lindenbach B.D., Thiel H.-J., Rice C.M. Flaviviridae: the viruses, their replication. Fields Virology 2007, vol. 1, 2 vols.:1101-1152. Lohmann Williams & Wilkins, Philadelphia, PA. 5th ed.
-
(2007)
Fields Virology
, vol.1-2
, pp. 1101-1152
-
-
Lindenbach, B.D.1
Thiel, H.-J.2
Rice, C.M.3
-
48
-
-
33846959081
-
HCV, CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly
-
Locker N., Easton L.E., Lukavsky P.J. HCV, CSFV IRES domain II mediate eIF2 release during 80S ribosome assembly. EMBO J. 2007, 26:795-805.
-
(2007)
EMBO J.
, vol.26
, pp. 795-805
-
-
Locker, N.1
Easton, L.E.2
Lukavsky, P.J.3
-
49
-
-
0344628782
-
Structure of HCV IRES domain II determined by NMR
-
Lukavsky P.J., Kim I., Otto G.A., Puglisi J.D. Structure of HCV IRES domain II determined by NMR. Nat. Struct. Biol. 2003, 10:1033-1038.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 1033-1038
-
-
Lukavsky, P.J.1
Kim, I.2
Otto, G.A.3
Puglisi, J.D.4
-
50
-
-
0033673387
-
Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function
-
Lukavsky P.J., Otto G.A., Lancaster A.M., Sarnow P., Puglisi J.D. Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function. Nat. Struct. Biol. 2000, 7:1105-1110.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1105-1110
-
-
Lukavsky, P.J.1
Otto, G.A.2
Lancaster, A.M.3
Sarnow, P.4
Puglisi, J.D.5
-
51
-
-
3242876311
-
BLAST: at the core of a powerful, diverse set of sequence analysis tools
-
Mcginnis S., Madden T.L. BLAST: at the core of a powerful, diverse set of sequence analysis tools. Nucleic Acids Res. 2004, 32:W20-25.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Mcginnis, S.1
Madden, T.L.2
-
52
-
-
38649087304
-
The internal initiation of translation in bovine viral diarrhea virus RNA depends on the presence of an RNA pseudoknot upstream of the initiation codon
-
Moes L., Wirth M. The internal initiation of translation in bovine viral diarrhea virus RNA depends on the presence of an RNA pseudoknot upstream of the initiation codon. Virol. J. 2007, 4:124.
-
(2007)
Virol. J.
, vol.4
, pp. 124
-
-
Moes, L.1
Wirth, M.2
-
53
-
-
0029402231
-
Getting closer to an understanding of the three-dimensional structure of ribosomal RNA
-
Mueller F., Doring T., Erdemir T., Greuer B., Junke N., Osswald M., Rinke-Appel J., Stade K., Thamm S., Brimacombe R. Getting closer to an understanding of the three-dimensional structure of ribosomal RNA. Biochem. Cell Biol. 1995, 73:767-773.
-
(1995)
Biochem. Cell Biol.
, vol.73
, pp. 767-773
-
-
Mueller, F.1
Doring, T.2
Erdemir, T.3
Greuer, B.4
Junke, N.5
Osswald, M.6
Rinke-Appel, J.7
Stade, K.8
Thamm, S.9
Brimacombe, R.10
-
54
-
-
0035052199
-
Efficient translation initiation is required for replication of bovine viral diarrhea virus subgenomic replicons
-
Myers T.M., Kolupaeva V.G., Mendez E., Baginski S.G., Frolov I., Hellen C.U., Rice C.M. Efficient translation initiation is required for replication of bovine viral diarrhea virus subgenomic replicons. J. Virol. 2001, 75:4226-4238.
-
(2001)
J. Virol.
, vol.75
, pp. 4226-4238
-
-
Myers, T.M.1
Kolupaeva, V.G.2
Mendez, E.3
Baginski, S.G.4
Frolov, I.5
Hellen, C.U.6
Rice, C.M.7
-
55
-
-
77955121660
-
Structure of the three-way helical junction of the hepatitis C virus IRES element
-
Ouellet J., Melcher S., Iqbal A., Ding Y., Lilley D.M.J. Structure of the three-way helical junction of the hepatitis C virus IRES element. RNA 2010, 16:1597-1609.
-
(2010)
RNA
, vol.16
, pp. 1597-1609
-
-
Ouellet, J.1
Melcher, S.2
Iqbal, A.3
Ding, Y.4
Lilley, D.M.J.5
-
56
-
-
34247895578
-
The hepatitis C virus life cycle as a target for new antiviral therapies
-
Pawlotsky J.M., Chevaliez S., Mchutchison J.G. The hepatitis C virus life cycle as a target for new antiviral therapies. Gastroenterology 2007, 132:1979-1998.
-
(2007)
Gastroenterology
, vol.132
, pp. 1979-1998
-
-
Pawlotsky, J.M.1
Chevaliez, S.2
Mchutchison, J.G.3
-
57
-
-
0027953871
-
Identification of a new group of bovine viral diarrhea virus strains associated with severe outbreaks, high mortalities
-
Pellerin C., Van Den Hurk J., Lecomte J., Tussen P. Identification of a new group of bovine viral diarrhea virus strains associated with severe outbreaks, high mortalities. Virology 1994, 203:260-268.
-
(1994)
Virology
, vol.203
, pp. 260-268
-
-
Pellerin, C.1
Van Den Hurk, J.2
Lecomte, J.3
Tussen, P.4
-
58
-
-
0033526509
-
Internal initiation of translation of bovine viral diarrhea virus RNA
-
Pestova T.V., Hellen C.U. Internal initiation of translation of bovine viral diarrhea virus RNA. Virology 1999, 258:249-256.
-
(1999)
Virology
, vol.258
, pp. 249-256
-
-
Pestova, T.V.1
Hellen, C.U.2
-
59
-
-
0031905698
-
A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C, classical swine fever virus RNAs
-
Pestova T.V., Shatsky I.N., Fletcher S.P., Jackson R.J., Hellen C.U. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C, classical swine fever virus RNAs. Genes Dev. 1998, 12:67-83.
-
(1998)
Genes Dev.
, vol.12
, pp. 67-83
-
-
Pestova, T.V.1
Shatsky, I.N.2
Fletcher, S.P.3
Jackson, R.J.4
Hellen, C.U.5
-
60
-
-
4444221565
-
UCSF Chimera--a visualization system for exploratory research and analysis
-
Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., Ferrin T.E. UCSF Chimera--a visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 25:1605-1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
61
-
-
0028830127
-
Pestivirus translation initiation occurs by internal ribosome entry
-
Poole T.L., Wang C., Popp R.A., Potgieter L.N., Siddiqui A., Collett M.S. Pestivirus translation initiation occurs by internal ribosome entry. Virology 1995, 206:750-754.
-
(1995)
Virology
, vol.206
, pp. 750-754
-
-
Poole, T.L.1
Wang, C.2
Popp, R.A.3
Potgieter, L.N.4
Siddiqui, A.5
Collett, M.S.6
-
62
-
-
0021717816
-
Cell-free translation of bovine viral diarrhea virus RNA
-
Purchio A.F., Larson R., Torborg L.L., Collett M.S. Cell-free translation of bovine viral diarrhea virus RNA. J. Virol. 1984, 52:973-975.
-
(1984)
J. Virol.
, vol.52
, pp. 973-975
-
-
Purchio, A.F.1
Larson, R.2
Torborg, L.L.3
Collett, M.S.4
-
63
-
-
0023061421
-
Molecular cloning of the bovine viral diarrhea virus genomic RNA
-
Renard A., Schmetz D., Guiot C., Brown-Shimmer S., Dagenais L., Pastoret P.P., Dina D., Martial J.A. Molecular cloning of the bovine viral diarrhea virus genomic RNA. Ann. Rech. Vet. 1987, 18:121-125.
-
(1987)
Ann. Rech. Vet.
, vol.18
, pp. 121-125
-
-
Renard, A.1
Schmetz, D.2
Guiot, C.3
Brown-Shimmer, S.4
Dagenais, L.5
Pastoret, P.P.6
Dina, D.7
Martial, J.A.8
-
64
-
-
0028892534
-
The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type 2 genotype: detection of a large genomic insertion in a noncytopathic BVDV
-
Ridpath J.F., Bolin S.R. The genomic sequence of a virulent bovine viral diarrhea virus (BVDV) from the type 2 genotype: detection of a large genomic insertion in a noncytopathic BVDV. Virology 1995, 212:39-46.
-
(1995)
Virology
, vol.212
, pp. 39-46
-
-
Ridpath, J.F.1
Bolin, S.R.2
-
65
-
-
0027949184
-
Segregation of bovine viral diarrhea virus into genotypes
-
Ridpath J.F., Bolin S.R., Dubovi E.J. Segregation of bovine viral diarrhea virus into genotypes. Virology 1994, 205:66-74.
-
(1994)
Virology
, vol.205
, pp. 66-74
-
-
Ridpath, J.F.1
Bolin, S.R.2
Dubovi, E.J.3
-
66
-
-
5144229241
-
Mutational, structural analysis of stem-loop IIIC of the hepatitis C virus, GB virus B internal ribosome entry sites
-
Rijnbrand R., Thiviyanathan V., Kaluarachchi K., Lemon S.M., Gorenstein D.G. Mutational, structural analysis of stem-loop IIIC of the hepatitis C virus, GB virus B internal ribosome entry sites. J. Mol. Biol. 2004, 343:805-817.
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 805-817
-
-
Rijnbrand, R.1
Thiviyanathan, V.2
Kaluarachchi, K.3
Lemon, S.M.4
Gorenstein, D.G.5
-
67
-
-
0031060497
-
Internal entry of ribosomes is directed by the 5' noncoding region of classical swine fever virus, is dependent on the presence of an RNA pseudoknot upstream of the initiation codon
-
Rijnbrand R., Van Der Straaten T., Van Rijn P.A., Spaan W.J., Bredenbeek P.J. Internal entry of ribosomes is directed by the 5' noncoding region of classical swine fever virus, is dependent on the presence of an RNA pseudoknot upstream of the initiation codon. J. Virol. 1997, 71:451-457.
-
(1997)
J. Virol.
, vol.71
, pp. 451-457
-
-
Rijnbrand, R.1
Van Der Straaten, T.2
Van Rijn, P.A.3
Spaan, W.J.4
Bredenbeek, P.J.5
-
68
-
-
78651310799
-
Database resources of the National Center for Biotechnology Information
-
Database issue
-
Sayers E.W., Barrett T., Benson D.A., Bolton E., Bryant S.H., Canese K., Chetvernin V., Church D.M., DiCuccio M., Federhen S., Feolo M., Fingerman I.M., Geer L.Y., Helmberg W., Kapustin Y., Landsman D., Lipman D.J., Lu Z., Madden T.L., Madej T., Maglott D.R., Marchler-Bauer A., Miller V., Mizrachi I., Ostell J., Panchenko A., Phan L., Pruitt K.D., Schuler G.D., Sequeira E., Sherry S.T., Shumway M., Sirotkin K., Slotta D., Souvorov A., Starchenko G., Tatusova T.A., Wagner L., Wang Y., Wilbur W.J., Yaschenko E., Ye J. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2011, 39(Database issue):D38-D51.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
Canese, K.6
Chetvernin, V.7
Church, D.M.8
DiCuccio, M.9
Federhen, S.10
Feolo, M.11
Fingerman, I.M.12
Geer, L.Y.13
Helmberg, W.14
Kapustin, Y.15
Landsman, D.16
Lipman, D.J.17
Lu, Z.18
Madden, T.L.19
Madej, T.20
Maglott, D.R.21
Marchler-Bauer, A.22
Miller, V.23
Mizrachi, I.24
Ostell, J.25
Panchenko, A.26
Phan, L.27
Pruitt, K.D.28
Schuler, G.D.29
Sequeira, E.30
Sherry, S.T.31
Shumway, M.32
Sirotkin, K.33
Slotta, D.34
Souvorov, A.35
Starchenko, G.36
Tatusova, T.A.37
Wagner, L.38
Wang, Y.39
Wilbur, W.J.40
Yaschenko, E.41
Ye, J.42
more..
-
69
-
-
28544439977
-
Structural roles for human translation factor eIF3 in initiation of protein synthesis
-
Siridechadilok B., Fraser C., Hall R., Doudna J., Nogales E. Structural roles for human translation factor eIF3 in initiation of protein synthesis. Science 2005, 310:1513-1515.
-
(2005)
Science
, vol.310
, pp. 1513-1515
-
-
Siridechadilok, B.1
Fraser, C.2
Hall, R.3
Doudna, J.4
Nogales, E.5
-
70
-
-
0031901132
-
Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus, classical swine fever virus RNAs
-
Sizova D.V., Kolupaeva V.G., Pestova T.V., Shatsky I.N., Hellen C.U. Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus, classical swine fever virus RNAs. J. Virol. 1998, 72:4775-4782.
-
(1998)
J. Virol.
, vol.72
, pp. 4775-4782
-
-
Sizova, D.V.1
Kolupaeva, V.G.2
Pestova, T.V.3
Shatsky, I.N.4
Hellen, C.U.5
-
71
-
-
0035831269
-
Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit
-
Spahn C.M., Kieft J.S., Grassucci R.A., Penczek P.A., Zhou K., Doudna J.A., Frank J. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40S ribosomal subunit. Science 2001, 291:1959-1962.
-
(2001)
Science
, vol.291
, pp. 1959-1962
-
-
Spahn, C.M.1
Kieft, J.S.2
Grassucci, R.A.3
Penczek, P.A.4
Zhou, K.5
Doudna, J.A.6
Frank, J.7
-
72
-
-
33746524898
-
Flaviviridae
-
Elsevier Academic Press, San Diego, CA, C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.)
-
Thiel H.-J., Collett M.S., Gould E.A., Heinz F.X., Meyers G., Purcell R.H., Rice C.M., Houghton M. Flaviviridae. Virus Taxonomy: VIIIth Report of the International Committee on Taxonomy of Viruses 2005, 981-998. Elsevier Academic Press, San Diego, CA. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
-
(2005)
Virus Taxonomy: VIIIth Report of the International Committee on Taxonomy of Viruses
, pp. 981-998
-
-
Thiel, H.-J.1
Collett, M.S.2
Gould, E.A.3
Heinz, F.X.4
Meyers, G.5
Purcell, R.H.6
Rice, C.M.7
Houghton, M.8
-
73
-
-
0019877459
-
Protein topography of the 40 S ribosomal subunit from rabbit reticulocytes shown by cross-linking with 2-iminothiolane
-
Tolan D.R., Traut R.R. Protein topography of the 40 S ribosomal subunit from rabbit reticulocytes shown by cross-linking with 2-iminothiolane. J. Biol. Chem. 1981, 256:10129-10136.
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 10129-10136
-
-
Tolan, D.R.1
Traut, R.R.2
-
74
-
-
0029331431
-
An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5' noncoding region
-
Wang C., Le S.Y., Ali N., Siddiqui A. An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5' noncoding region. RNA 1995, 1:526-537.
-
(1995)
RNA
, vol.1
, pp. 526-537
-
-
Wang, C.1
Le, S.Y.2
Ali, N.3
Siddiqui, A.4
-
75
-
-
65449188232
-
Jalview Version 2-a multiple sequence alignment analysis workbench
-
Waterhouse A.M., Procter J.B., Martin D.M., Clamp M., Barton G.J. Jalview Version 2-a multiple sequence alignment analysis workbench. Bioinformatics 2009, 25:1189-1191.
-
(2009)
Bioinformatics
, vol.25
, pp. 1189-1191
-
-
Waterhouse, A.M.1
Procter, J.B.2
Martin, D.M.3
Clamp, M.4
Barton, G.J.5
-
76
-
-
0034086727
-
A stem-loop motif formed by the immediate 5' terminus of the bovine viral diarrhea virus genome modulates translation as well as replication of the viral RNA
-
Yu H., Isken O., Grassmann C.W., Behrens S.-E. A stem-loop motif formed by the immediate 5' terminus of the bovine viral diarrhea virus genome modulates translation as well as replication of the viral RNA. J. Virol. 2000, 74:5825-5835.
-
(2000)
J. Virol.
, vol.74
, pp. 5825-5835
-
-
Yu, H.1
Isken, O.2
Grassmann, C.W.3
Behrens, S.-E.4
-
77
-
-
41949111249
-
Structure of hepatitis C virus IRES subdomain IIa
-
Zhao Q., Han Q., Kissinger C.R., Hermann T., Thompson P.A. Structure of hepatitis C virus IRES subdomain IIa. Acta Crystallogr. D: Biol. Crystallogr. 2008, 64:436-443.
-
(2008)
Acta Crystallogr. D: Biol. Crystallogr.
, vol.64
, pp. 436-443
-
-
Zhao, Q.1
Han, Q.2
Kissinger, C.R.3
Hermann, T.4
Thompson, P.A.5
-
78
-
-
11144313663
-
A nomenclature for all signal recognition particle RNAs
-
Zwieb C., Van Nues R.W., Rosenblad M.A., Brown J.D., Samuelsson T. A nomenclature for all signal recognition particle RNAs. RNA 2005, 11:7-13.
-
(2005)
RNA
, vol.11
, pp. 7-13
-
-
Zwieb, C.1
Van Nues, R.W.2
Rosenblad, M.A.3
Brown, J.D.4
Samuelsson, T.5
|