Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs

Journal of Virology

Volumn 72, Issue 6, 1998, Pages 4775-4782

  Sizova, Daria V ^a   Kolupaeva, Victoria G ^a,b   Pestova, Tatyana V ^a,b   Shatsky, Ivan N ^a   Hellen, Christopher U T ^b  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

^b SUNY DOWNSTATE MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INITIATION FACTOR 3; RIBOSOME RNA; VIRUS RNA;

ARTICLE; CODON; CONTROLLED STUDY; FLAVIVIRUS; HEPATITIS B; HEPATITIS C VIRUS; NONHUMAN; PESTIVIRUS; PRIORITY JOURNAL; PROTEIN DOMAIN; RIBOSOME; TRANSLATION INITIATION; VIRUS TRANSCRIPTION;

EID: 0031901132     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.6.4775-4782.1998     Document Type: Article

References (36)

1. Alter, H. J. 1995. To C or not to C: these are the questions. Blood 85: 1681-1695.
2. Anthony, D. D., and W. C. Merrick. 1992. Analysis of 40S and 80S complexes with mRNA as measured by sucrose density gradients and primer extension inhibition. J. Biol. Chem. 267:1554-1562.
3. Baker A.-M., and D. E. Draper. 1995. Messenger RNA recognition by fragments of ribosomal protein S4. J. Biol. Chem. 270:22939-22945.
4. Benne R., and J. W. B. Hershey. 1978. The mechanism of action of protein synthesis initiation factors from rabbit reticulocytes. J. Biol. Chem. 253: 3078-3087.
5. Brown, E. A., H. Zhang, L.-H. Ping, and S. M. Lemon. 1992. Secondary structure of the 5′ nontranslated regions of hepatitis C virus and pestivirus genomic RNAs. Nucleic Acids Res. 20:5041-5045.
6. Ehresmann, C., F. Baudin, M. Mougel, P. Romby, J. P. Ebel, and B. Ehresmann. 1987. Probing the structure of RNA in solution. Nucleic Acids Res. 19:665-671.
7. Garcia-Barrio, M. T., T. Naranda, C. R. Vasquez de Aldana, R. Cuesta, A. G. Hinnebusch, J. W. B. Hershey and M. Tamame. 1995. GCD10, a translational repressor of GCN4. is the RNA-binding subunit of eukaryotic translation initiation factor-3. Genes Dev. 9:1781-1796.
8. Hannig, E. M. 1995. Protein synthesis in eukaryotic organisms: new insights into the function of translation initiation factor eIF-3. Bioessays 17:915-919.
9. Hartz, D., D. S. McPheeters, R. Traut, and L. Gold. 1988. Extension inhibition analysis of translation initiation complexes. Methods Enzymol. 164: 419-425
10. Honda, M., L. H. Ping, R. C. A. Rijnbrand, E. Amphlett, B. Clarke, D. Rowlands, and S. M. Lemon. 1996. Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA. Virology 222:31-42.
11. Honda, M., E. A. Brown, and S. M. Lemon. 1996. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA. RNA 2:955-968.
12. Johnson, K. R., W. C. Merrick, W. L. Zoll, and Y. Zhu. 1997. Identification of cDNA clones for the large subunit of eukaryotic translation initiation factor 3. Comparison of homologues from human, Nicotiana tabacum, Caenorhabditis elegans and Saccharomyces cerevisiae. J. Biol. Chem. 272:7106-7113.
13. Kolupaeva, V. G., C. U. T. Hellen, and I. N. Shatsky. 1996. Structural analysis of the interaction of the pyrimidine tract-binding protein with the internal ribosomal entry site of encephalomyocarditis virus and foot-and-mouth disease virus RNAs. RNA 2:1199-1212.
14. Meador, J., B. Cannon, V. J. Cannistraro, and D. Kennel. 1990. Purification and characterization of Escherichia coli RNase I. Comparison with RNase M. Eur. J. Biochem. 187:549-553.
15. Merrick, W. C. 1979. Purification of protein synthesis initiation factors from rabbit reticulocytes. Methods Enzymol. 60:101-108.
16. Methot, N., E. Rom, H. Olsen, and N. Sonenberg. 1997. The human homologue of the yeast Prt1 protein is an integral part of the eukaryotic initiation factor 3 complex and interacts with p170. J. Biol. Chem. 272:1110-1116.
17. Moazed D., S. Stern, and H. F. Noller. 1986. Rapid chemical probing of conformation in 16S ribosomal RNA and 30S ribosomal subunits using primer extension. J. Mol. Biol. 187:399-416.
18. Naranda, T., S. E. McMillan, and J. W. B. Hershey. 1994. Purified yeast translation initiation factor eIF-3 is an RNA-binding protein complex that contains the PRT1 protein. J. Biol. Chem. 269:32286-32292.
19. Pestova T. V., C. U. T. Hellen, and E. Wimmer. 1991. Translation of poliovirus RNA role of an essential cis-acting oligopyrimidine element within the 5′-nontranslated region and involvement of a cellular 57-kilodalton protein. J Virol. 65:6194-6204.
20. Pestova T. V., C. U. T. Hellen, and I. N. Shatsky. 1996. Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry Mol. Cell. Biol. 16:6859-6869.
21. Pestova T. V., I. N. Shatsky, and C. U. T. Hellen. 1996. Functional dissection of eukaryotic initiation factor 4F: the 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes. Mol. Cell. Biol. 16:6870-6878.
22. Pestova T. V., I. N. Shatsky, S. P. Fletcher, R. J. Jackson, and C. U. T. Hellen. 1998 A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal initiation of translation of hepatitis C virus and classical swine fever virus RNAs. Genes Dev. 12:67-83.
23. Poole, T. L., C. Wang, R. A. Popp, L. N. D. Potgieter, A. Siddiqui, and M. S. Collett. 1995. Pestivirus translation initiation occurs by internal ribosome entry. Virology 206:750-754.
24. Reynolds, J. E., A. Kaminski, H. J. Kettinen K. Grace, B. E. Clarke, A. R. Carroll, D. J. Rowlands, and R. J. Jackson. 1995. Unique features internal initiation of hepatitis C virus RNA translation. EMBO J. 14:6010-6020.
25. Reynolds, J. E., A. Kaminski, A. R. Carroll, B. E. Clarke, D. J. Rowlands, and R. J. Jackson. 1996. Internal initiation of translation of hepatitis C virus RNA: the ribosome entry site is at the authentic initiation codon. RNA 2: 867-878.
26. Rijnbrand, R., P. J. Bredenbeek, T. van der Straaten, L. Whetter, G Inchauspe, S. Lemon, and W. Spaan. 1995. Almost the entire 5 non-translated region of hepatitis C virus is required for cap-independent translation. FEBS Lett. 365:115-119.
27. Rijnbrand, R., T. E. M. Abbink, P. C. J. Haasnoot, W. J. M. Spaan, and P. J. Bredenbeek. 1996. The influence of AUG codons in the hepatitis C virus 5′ nontranslated region on translation and mapping of the translation initiation window. Virology 226:47-56.
28. Rijnbrand R., T. van der Straaten, P. A. van Rijn, W. J. M. Spaan and P. J. Bredenbeek. 1997. Internal entry of ribosomes is directed by the 5′ noncoding region of classical swine fever virus and is dependent on the presence of an RNA pseudoknot upstream of the initiation codon. J. Virol. 71:451-457.
29. Setyono, B., H. Van Steeg, and H. O. Voorma. 1984. Ultraviolet-crosslinking reveals specific affinity of eukaryotic initiation factors for Semliki forest virus mRNA. Biochim. Biophys. Acta 782:242-246.
30. Smith, D. B., J. Mellor, L. M. Jarvis, F. Davidson, J. Kolberg, M. Urdea, P.-L. Yap, P. Simmonds, and The International HCV Collaborative Study Group. 1995. Variation of the hepatitis C virus 5′ non-coding region: implications for secondary structure, virus detection and typing. J. Gen Virol. 76: 1749-1761.
31. Sundkvist, I. C., and T. Staehelin. 1975. Structure and function of free 40S ribosome subunits: characterization of initiation factors. J. Mol. Biol. 99: 401-418.
32. Trachsel H., and T. Staehelin. 1979. Initiation of mammalian protein synthesis: the multiple functions of the initiation factor eIF-3. Biochim. Biophys. Acta 565:305-314.
33. Tsukiyama-Kohara, K., N. Iizuka, M. Kohara, and A. Nomoto. 1992. Internal ribosomal entry site within hepatitis C virus RNA. J. Virol. 66:1476-1483.
34. Wang, C., S. Y. Le, N. Ali, and A. Siddiqui. 1995. An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5′ noncoding region. RNA 1:526-337.
35. Wang, C., P. Sarnow, and A. Siddiqui. 1994. A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA. J. Virol. 68:7301-7307.
36. Westermann, P., and O. Nygard. 1984. Cross-linking of mRNA to initiation factor eIF-3, 24kDa cap binding protein and ribosomal proteins S1, S3/3a, S6 and S11 within the 48S pre-initiation complex. Nucleic Acids Res. 12:8887-8897.