Ribosomal binding to the internal ribosomal entry site of classical swine fever virus

RNA

Volumn 6, Issue 12, 2000, Pages 1791-1807

  Kolupaeva, V G ^a   Pestova, T V ^a   Hellen, C U T ^a  

^a SUNY DOWNSTATE MEDICAL CENTER   (United States)

Author keywords

Classical swine fever virus; elF3; Enzymatic footprinting; Initiation; Internal ribosomal entry site; Ribosome; Translation

Indexed keywords

MESSENGER RNA; NUCLEOTIDE; RIBONUCLEASE; VIRUS RNA;

ARTICLE; DNA FOOTPRINTING; MUTAGENESIS; NONHUMAN; PESTIVIRUS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN INTERACTION; RIBOSOME; RIBOSOME SUBUNIT; START CODON; TRANSLATION INITIATION;

5' UNTRANSLATED REGIONS; ANIMALS; BASE SEQUENCE; BINDING SITES; CELL-FREE SYSTEM; CLASSICAL SWINE FEVER VIRUS; CODON; GENE EXPRESSION REGULATION, VIRAL; MACROMOLECULAR SUBSTANCES; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PEPTIDE CHAIN INITIATION, TRANSLATIONAL; PEPTIDE INITIATION FACTORS; PROKARYOTIC INITIATION FACTOR-3; RABBITS; RIBOSOMES; RNA, MESSENGER; RNA, VIRAL; SEQUENCE DELETION; STRUCTURE-ACTIVITY RELATIONSHIP;

ANIMALIA; CLASSICAL SWINE FEVER VIRUS; DNA VIRUSES; EUKARYOTA; PESTIVIRUS; SUS SCROFA;

EID: 0034542566     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838200000662     Document Type: Article

References (45)

1. Secondary structure of the 5' nontranslated regions of hepatitis C virus and pestivirus genomic RNAs
2. Protection of satellite tobacco necrosis virus ribonucleic acid by wheat germ 40S and 80S ribosomes
3. Functional analysis of the interaction between HCV 5' UTR and putative subunits of eukaryotic translation initiation factor elF3
4. Genetic analysis of the internal ribosome entry segment of bovine viral diarrhea virus
5. Probing the structure of RNAs in solution
6. Translation of hepatitis C virus RNA
7. Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA
8. Internal initiation of translation in eukaryotes: The picornavirus paradigm and beyond
9. Identification of eukaryotic mRNAs that are translated at reduced cap binding complex elF4F concentrations using a cDNA microarray
10. Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and elF4G conferred by internal ribosome entry sites
11. Genetic analysis of internal ribosome entry site on hepatitis C virus RNA: Implication for involvement of the highly ordered structure and cell type-specific trans-acting factors
12. The hepatitis C virus internal ribosomal entry site adopts an ion-dependent tertiary fold
13. Thermodynamics of Single mismatches in RNA duplexes
14. NMR structure of a classical pseudoknot: Interplay of single- and double-stranded RNA
15. Structural analysis of the interaction of the pyrimidine tract-binding protein with the internal ribosomal entry site of encephalomyocarditis virus and foot-and-mouth disease virus RNAs
16. An enzymatic footprinting analysis of the interaction of 40S ribosomal subunits with the internal ribosomal entry site of hepatitis C virus
17. Translation initiation factor elF4G recognizes a specific structural element within the internal ribosomal entry site of encephalomyocarditis virus RNA
18. Nucleotide sequences of 5'-terminal ribosome-protected initiation regions from two reovirus messages
19. Sequences and properties of two ribosome binding sites from the small size class of reovirus messenger mRNA
20. Phylogenetic evidence for the improved RNA higher-order structure in internal ribosome entry sequences of HCV and pestiviruses
21. 125-labelled rabbit globin messenger RNA
22. Internal ribosome entry sites within the RNA genomes of hepatitis C virus and other flaviviruses
23. Mechanism and regulation of eukaryotic protein synthesis
24. Influence of correct secondary and tertiary RNA folding on the binding of cellular factors to the HCV IRES
25. Dominant negative mutants of mammalian translation initiation factor elF-4A define a critical role for elF-4F in cap-dependent and capindependent initiation of translation
26. Mutational analysis of upstream AUG codons of poliovirus RNA
27. Eukaryotic ribosomes require elFs 1 and 1A to locate initiation codons
28. Internal initiation of translation of bovine viral diarrhea virus RNA
29. Canonical eukaryotic initiation factors determine initiation of translation by internal ribosomal entry
30. The ribosomal subunit joining reaction in eukaryotes requires elF5B
31. A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal initiation of translation of Hepatitis C virus and classical swine fever virus RNAs
32. Functional dissection of eukaryotic initiation factor 4F: The 4A subunit and the central domain of the 4G subunit are sufficient to mediate internal entry of 43S preinitiation complexes
33. A cell-cycle-dependent protein serves as a template-specific translation initiation factor
34. Mutational analysis of a conserved tetraloop in the 5' untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function
35. Internal initiation of translation of hepatitis C virus RNA: The ribosome entry site is at the authentic initiation codon
36. Unique features of internal initiation on hepatitis C virus
37. The influence of AUG codons in the hepatitis C virus 5' nontranslated region on translation and mapping of the translation initiation window
38. Internal entry of ribosomes is directed by the 5' noncoding region of Classical swine fever virus and is dependent on the presence of an RNA pseudoknot upstream of the initiation codon
39. The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
40. Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs
41. Structure and function of free 40S ribosome subunits: Characterization of initiation factors
42. Internal ribosomal entry site within hepatitis C virus RNA
43. An RNA pseudoknot is an essential structural element of the internal ribosome entry site located within the hepatitis C virus 5' noncoding region
44. A conserved helical element is essential for internal initiation of translation of hepatitis C virus RNA
45. Initiation of protein synthesis from the A-site of the ribosome