-
1
-
-
60549115605
-
Affymetrix ENCODE Transcriptome Project & Cold Spring Harbor Laboratory ENCODE Transcriptome Project. Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs
-
Affymetrix ENCODE Transcriptome Project & Cold Spring Harbor Laboratory ENCODE Transcriptome Project. Post-transcriptional processing generates a diversity of 5′-modified long and short RNAs Nature 457 2009 1028 1032
-
(2009)
Nature
, vol.457
, pp. 1028-1032
-
-
-
2
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
DOI 10.1038/nature07002, PII NATURE07002
-
B.T. Wilhelm, S. Marguerat, S. Watt, F. Schubert, V. Wood, and I. Goodhead Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution Nature 453 2008 1239 1243 (Pubitemid 351913597)
-
(2008)
Nature
, vol.453
, Issue.7199
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
3
-
-
0017855369
-
Ribonuclease P: An enzyme with an essential RNA component
-
B.C. Stark, R. Kole, E.J. Bowman, and S. Altman Ribonuclease P: an enzyme with an essential RNA component Proc Natl Acad Sci USA 75 1978 3717 3721 (Pubitemid 8399918)
-
(1978)
Proceedings of the National Academy of Sciences of the United States of America
, vol.75
, Issue.8
, pp. 3717-3721
-
-
Stark, B.C.1
Kole, R.2
Bowman, E.J.3
Altman, S.4
-
4
-
-
0020417286
-
Self-splicing RNA: Autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena
-
K. Kruger, P.J. Grabowski, A.J. Zaug, J. Sands, D.E. Gottschling, and T.R. Cech Self-splicing RNA, autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena Cell 31 1982 147 157 (Pubitemid 13215202)
-
(1982)
Cell
, vol.31
, Issue.1
, pp. 147-157
-
-
Kruger, K.1
Grabowski, P.J.2
Zaug, A.J.3
-
5
-
-
0025332385
-
Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA
-
D.L. Robertson, and G.F. Joyce Selection in vitro of an RNA enzyme that specifically cleaves single-stranded DNA Nature 344 1990 467 468
-
(1990)
Nature
, vol.344
, pp. 467-468
-
-
Robertson, D.L.1
Joyce, G.F.2
-
7
-
-
77954855829
-
Non-coding RNAs: Meet thy masters
-
F.F. Costa Non-coding RNAs: meet thy masters Bioessays 32 2010 599 608
-
(2010)
Bioessays
, vol.32
, pp. 599-608
-
-
Costa, F.F.1
-
8
-
-
79959359296
-
Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells
-
K.V. Morris Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells Epigenetics 4 2009 296 301
-
(2009)
Epigenetics
, vol.4
, pp. 296-301
-
-
Morris, K.V.1
-
9
-
-
79959346470
-
Non-coding RNAs, epigenetic memory and the passage of information to progeny
-
K.V. Morris Non-coding RNAs, epigenetic memory and the passage of information to progeny RNA Biol 6 2009 242 247
-
(2009)
RNA Biol
, vol.6
, pp. 242-247
-
-
Morris, K.V.1
-
10
-
-
79951495822
-
LncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements
-
C. Gong, and L.E. Maquat lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements Nature 470 2011 284 288
-
(2011)
Nature
, vol.470
, pp. 284-288
-
-
Gong, C.1
Maquat, L.E.2
-
11
-
-
34249977890
-
Staufen1 regulates diverse classes of mammalian transcripts
-
DOI 10.1038/sj.emboj.7601712, PII 7601712
-
Y.K. Kim, L. Furic, M. Parisien, F. Major, L. DesGroseillers, and L.E. Maquat Staufen1 regulates diverse classes of mammalian transcripts EMBO J 26 2007 2670 2681 (Pubitemid 46884281)
-
(2007)
EMBO Journal
, vol.26
, Issue.11
, pp. 2670-2681
-
-
Kim, Y.K.1
Furic, L.2
Parisien, M.3
Major, F.4
DesGroseillers, L.5
Maquat, L.E.6
-
13
-
-
55949137722
-
Persistent epigenetic differences associated with prenatal exposure to famine in humans
-
B.T. Heijmans, E.W. Tobi, A.D. Stein, H. Putter, G.J. Blauw, and E.S. Susser Persistent epigenetic differences associated with prenatal exposure to famine in humans Proc Natl Acad Sci USA 105 2008 17046 17049
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 17046-17049
-
-
Heijmans, B.T.1
Tobi, E.W.2
Stein, A.D.3
Putter, H.4
Blauw, G.J.5
Susser, E.S.6
-
14
-
-
33745319337
-
RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
-
DOI 10.1038/nature04674, PII NATURE04674
-
M. Rassoulzadegan, V. Grandjean, P. Gounon, S. Vincent, I. Gillot, and F. Cuzin RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse Nature 441 2006 469 474 (Pubitemid 44050143)
-
(2006)
Nature
, vol.441
, Issue.7092
, pp. 469-474
-
-
Rassoulzadegan, M.1
Grandjean, V.2
Gounon, P.3
Vincent, S.4
Gillot, I.5
Cuzin, F.6
-
15
-
-
44449141843
-
RNA Induction and Inheritance of Epigenetic Cardiac Hypertrophy in the Mouse
-
DOI 10.1016/j.devcel.2008.03.009, PII S1534580708001196
-
K.D. Wagner, N. Wagner, H. Ghanbarian, V. Grandjean, P. Gounon, and F. Cuzin RNA induction and inheritance of epigenetic cardiac hypertrophy in the mouse Dev Cell 14 2008 962 969 (Pubitemid 351757196)
-
(2008)
Developmental Cell
, vol.14
, Issue.6
, pp. 962-969
-
-
Wagner, K.D.1
Wagner, N.2
Ghanbarian, H.3
Grandjean, V.4
Gounon, P.5
Cuzin, F.6
Rassoulzadegan, M.7
-
16
-
-
36048951040
-
Antisense RNA Stabilization Induces Transcriptional Gene Silencing via Histone Deacetylation in S. cerevisiae
-
DOI 10.1016/j.cell.2007.09.014, PII S0092867407012019
-
J. Camblong, N. Iglesias, C. Fickentscher, G. Dieppois, and F. Stutz Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae Cell 131 2007 706 717 (Pubitemid 350087198)
-
(2007)
Cell
, vol.131
, Issue.4
, pp. 706-717
-
-
Camblong, J.1
Iglesias, N.2
Fickentscher, C.3
Dieppois, G.4
Stutz, F.5
-
17
-
-
27644525713
-
Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF
-
DOI 10.1016/j.molcel.2005.09.002, PII S1097276505015996
-
D.H. Cho, C.P. Thienes, S.E. Mahoney, E. Analau, G.N. Filippova, and S.J. Tapscott Antisense transcription and heterochromatin at the DM1 CTG repeats are constrained by CTCF Mol Cell 20 2005 483 489 (Pubitemid 41572304)
-
(2005)
Molecular Cell
, vol.20
, Issue.3
, pp. 483-489
-
-
Cho, D.H.1
Thienes, C.P.2
Mahoney, S.E.3
Analau, E.4
Filippova, G.N.5
Tapscott, S.J.6
-
18
-
-
48749089460
-
PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element
-
A.K. Ebralidze, F.C. Guibal, U. Steidl, P. Zhang, S. Lee, and B. Bartholdy PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element Genes Dev 22 2008 2085 2092
-
(2008)
Genes Dev
, vol.22
, pp. 2085-2092
-
-
Ebralidze, A.K.1
Guibal, F.C.2
Steidl, U.3
Zhang, P.4
Lee, S.5
Bartholdy, B.6
-
19
-
-
79952255050
-
Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5
-
P.G. Hawkins, and K.V. Morris Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5 Transcription 1 2010 165 175
-
(2010)
Transcription
, vol.1
, pp. 165-175
-
-
Hawkins, P.G.1
Morris, K.V.2
-
20
-
-
74949140605
-
A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo
-
K. Li, Y. Blum, A. Verma, Z. Liu, K. Pramanik, and N.R. Leigh A noncoding antisense RNA in tie-1 locus regulates tie-1 function in vivo Blood 115 2010 133 139
-
(2010)
Blood
, vol.115
, pp. 133-139
-
-
Li, K.1
Blum, Y.2
Verma, A.3
Liu, Z.4
Pramanik, K.5
Leigh, N.R.6
-
21
-
-
57149110631
-
Bidirectional transcription directs both transcriptional gene activation and suppression in human cells
-
K.V. Morris, S. Santoso, A.M. Turner, C. Pastori, and P.G. Hawkins Bidirectional transcription directs both transcriptional gene activation and suppression in human cells PLoS Genet 4 2008 e1000258
-
(2008)
PLoS Genet
, vol.4
, pp. 1000258
-
-
Morris, K.V.1
Santoso, S.2
Turner, A.M.3
Pastori, C.4
Hawkins, P.G.5
-
22
-
-
0038581890
-
Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease
-
DOI 10.1038/ng1157
-
C. Tufarelli, J.A. Stanley, D. Garrick, J.A. Sharpe, H. Ayyub, and W.G. Wood Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease Nat Genet 34 2003 157 165 (Pubitemid 36666926)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 157-165
-
-
Tufarelli, C.1
Sloane Stanley, J.A.2
Garrick, D.3
Sharpe, J.A.4
Ayyub, H.5
Wood, W.G.6
Higgs, D.R.7
-
23
-
-
38049155825
-
Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
-
W. Yu, D. Gius, P. Onyango, K. Muldoon-Jacobs, J. Karp, and A.P. Feinberg Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA Nature 451 2008 202 206
-
(2008)
Nature
, vol.451
, pp. 202-206
-
-
Yu, W.1
Gius, D.2
Onyango, P.3
Muldoon-Jacobs, K.4
Karp, J.5
Feinberg, A.P.6
-
24
-
-
49949090861
-
The functional repertoires of metazoan genomes
-
C.P. Ponting The functional repertoires of metazoan genomes Nat Rev Genet 9 2008 689 698
-
(2008)
Nat Rev Genet
, vol.9
, pp. 689-698
-
-
Ponting, C.P.1
-
25
-
-
62249133709
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
-
M. Guttman, I. Amit, M. Garber, C. French, M.F. Lin, and D. Feldser Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals Nature 458 2009 223 227
-
(2009)
Nature
, vol.458
, pp. 223-227
-
-
Guttman, M.1
Amit, I.2
Garber, M.3
French, C.4
Lin, M.F.5
Feldser, D.6
-
26
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
P. Carninci, T. Kasukawa, S. Katayama, J. Gough, M.C. Frith, and N. Maeda The transcriptional landscape of the mammalian genome Science 309 2005 1559 1563
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
-
27
-
-
21044431735
-
Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution
-
DOI 10.1126/science.1108625
-
J. Cheng, P. Kapranov, J. Drenkow, S. Dike, S. Brubaker, and S. Patel Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution Science 308 2005 1149 1154 (Pubitemid 40696429)
-
(2005)
Science
, vol.308
, Issue.5725
, pp. 1149-1154
-
-
Cheng, J.1
Kapranov, P.2
Drenkow, J.3
Dike, S.4
Brubaker, S.5
Patel, S.6
Long, J.7
Stern, D.8
Tammana, H.9
Helt, G.10
Sementchenko, V.11
Piccolboni, A.12
Bekiranov, S.13
Bailey, D.K.14
Ganesh, M.15
Ghosh, S.16
Bell, I.17
Gerhard, D.S.18
Gingeras, T.R.19
-
28
-
-
34447573973
-
Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA
-
DOI 10.1038/ncb1595, PII NCB1595
-
T. Kondo, Y. Hashimoto, K. Kato, S. Inagaki, S. Hayashi, and Y. Kageyama Small peptide regulators of actin-based cell morphogenesis encoded by a polycistronic mRNA Nat Cell Biol 9 2007 660 665 (Pubitemid 47214728)
-
(2007)
Nature Cell Biology
, vol.9
, Issue.6
, pp. 660-665
-
-
Kondo, T.1
Hashimoto, Y.2
Kato, K.3
Inagaki, S.4
Hayashi, S.5
Kageyama, Y.6
-
29
-
-
67650921949
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
-
A.M. Khalil, M. Guttman, H.M.M. Garber, A. Raj, and D. Rivea Morales Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression Proc Natl Acad Sci USA 106 2009 11667 11672
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 11667-11672
-
-
Khalil, A.M.1
Guttman, M.2
Garber, H.M.M.3
Raj, A.4
Rivea Morales, D.5
-
30
-
-
24344454298
-
Delving into the diversity of facultative heterochromatin: The epigenetics of the inactive X chromosome
-
DOI 10.1016/j.gde.2005.08.009, PII S0959437X05001395
-
E. Heard Delving into the diversity of facultative heterochromatin: the epigenetics of the inactive X chromosome Curr Opin Genet Dev 15 2005 482 489 (Pubitemid 41262403)
-
(2005)
Current Opinion in Genetics and Development
, vol.15
, Issue.5 SPEC. ISS.
, pp. 482-489
-
-
Heard, E.1
-
31
-
-
56549111129
-
The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
T. Nagano, J.A. Mitchell, L.A. Sanz, F.M. Pauler, A.C. Ferguson-Smith, and R. Feil The air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin Science 322 2008 1717 1720
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
Mitchell, J.A.2
Sanz, L.A.3
Pauler, F.M.4
Ferguson-Smith, A.C.5
Feil, R.6
-
32
-
-
34250729138
-
Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs
-
DOI 10.1016/j.cell.2007.05.022, PII S0092867407006599
-
J.L. Rinn, M. Kertesz, J.K. Wang, S.L. Squazzo, X. Xu, and S.A. Brugmann Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs Cell 129 2007 1311 1323 (Pubitemid 46962090)
-
(2007)
Cell
, vol.129
, Issue.7
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
Goodnough, L.H.7
Helms, J.A.8
Farnham, P.J.9
Segal, E.10
Chang, H.Y.11
-
33
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
R.A. Gupta, N. Shah, K.C. Wang, J. Kim, H.M. Horlings, and D.J. Wong Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis Nature 464 2010 1071 1076
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
-
34
-
-
62549117314
-
An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
-
C.M. Clemson, J.N. Hutchinson, S.A. Sara, A.W. Ensminger, A.H. Fox, and A. Chess An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles Mol Cell 33 2009 717 726
-
(2009)
Mol Cell
, vol.33
, pp. 717-726
-
-
Clemson, C.M.1
Hutchinson, J.N.2
Sara, S.A.3
Ensminger, A.W.4
Fox, A.H.5
Chess, A.6
-
35
-
-
0037039475
-
Paraspeckles: A novel nuclear domain
-
DOI 10.1016/S0960-9822(01)00632-7, PII S0960982201006327
-
A.H. Fox, Y.W. Lam, A.K. Leung, C.E. Lyon, J. Andersen, and M. Mann Paraspeckles: a novel nuclear domain Curr Biol 12 2002 13 25 (Pubitemid 34063349)
-
(2002)
Current Biology
, vol.12
, Issue.1
, pp. 13-25
-
-
Fox, A.H.1
Lam, Y.W.2
Leung, A.K.L.3
Lyon, C.E.4
Andersen, J.5
Mann, M.6
Lamond, A.I.7
-
36
-
-
77954572735
-
Long noncoding RNA as modular scaffold of histone modification complexes
-
M.C. Tsai, O. Manor, Y. Wan, N. Mosammaparast, J.K. Wang, and F. Lan Long noncoding RNA as modular scaffold of histone modification complexes Science 329 2010 689 693
-
(2010)
Science
, vol.329
, pp. 689-693
-
-
Tsai, M.C.1
Manor, O.2
Wan, Y.3
Mosammaparast, N.4
Wang, J.K.5
Lan, F.6
-
37
-
-
66349129918
-
Regulation of imprinted expression by macro non-coding RNAs
-
P.A. Latos, and D.P. Barlow Regulation of imprinted expression by macro non-coding RNAs RNA Biol 6 2009 100 106
-
(2009)
RNA Biol
, vol.6
, pp. 100-106
-
-
Latos, P.A.1
Barlow, D.P.2
-
38
-
-
75149163987
-
Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells
-
J. Sheik Mohamed, P.M. Gaughwin, B. Lim, P. Robson, and L. Lipovich Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells RNA 16 2010 324 337
-
(2010)
RNA
, vol.16
, pp. 324-337
-
-
Sheik Mohamed, J.1
Gaughwin, P.M.2
Lim, B.3
Robson, P.4
Lipovich, L.5
-
39
-
-
33646501507
-
Natural antisense and noncoding RNA transcripts as potential drug targets
-
C. Wahlestedt Natural antisense and noncoding RNA transcripts as potential drug targets Drug Discov Today 11 2006 503 508
-
(2006)
Drug Discov Today
, vol.11
, pp. 503-508
-
-
Wahlestedt, C.1
-
40
-
-
80051884378
-
The emerging role of RNA in the regulation of gene transcription in human cells
-
[Epub ahead of print]
-
K.V. Morris The emerging role of RNA in the regulation of gene transcription in human cells Semin Cell Dev Biol 2011 [Epub ahead of print]
-
(2011)
Semin Cell Dev Biol
-
-
Morris, K.V.1
-
41
-
-
77955452809
-
Long antisense non-coding RNAs and their role in transcription and oncogenesis
-
K.V. Morris, and P.K. Vogt Long antisense non-coding RNAs and their role in transcription and oncogenesis Cell Cycle 9 2010 2544 2547
-
(2010)
Cell Cycle
, vol.9
, pp. 2544-2547
-
-
Morris, K.V.1
Vogt, P.K.2
-
42
-
-
50649118350
-
Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation
-
M.E. Dinger, P.P. Amaral, T.R. Mercer, K.C. Pang, S.J. Bruce, and B.B. Gardiner Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation Genome Res 18 2008 1433 1445
-
(2008)
Genome Res
, vol.18
, pp. 1433-1445
-
-
Dinger, M.E.1
Amaral, P.P.2
Mercer, T.R.3
Pang, K.C.4
Bruce, S.J.5
Gardiner, B.B.6
-
43
-
-
76749108015
-
RNA-directed transcriptional gene silencing and activation in human cells
-
K.V. Morris RNA-directed transcriptional gene silencing and activation in human cells Oligonucleotides 19 2009 299 306
-
(2009)
Oligonucleotides
, vol.19
, pp. 299-306
-
-
Morris, K.V.1
-
44
-
-
77955323879
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response
-
M. Huarte, M. Guttman, D. Feldser, M. Garber, M.J. Koziol, and D. Kenzelmann-Broz A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response Cell 142 2010 409 419
-
(2010)
Cell
, vol.142
, pp. 409-419
-
-
Huarte, M.1
Guttman, M.2
Feldser, D.3
Garber, M.4
Koziol, M.J.5
Kenzelmann-Broz, D.6
-
45
-
-
78650240738
-
As model for RNA's niche in epigenomic regulation
-
J.T. Lee As model for RNA's niche in epigenomic regulation Cold Spring Harb Perspect Biol 2 2010 a003749
-
(2010)
Cold Spring Harb Perspect Biol
, vol.2
, pp. 003749
-
-
Lee, J.T.1
|