메뉴 건너뛰기




Volumn 22, Issue 4, 2011, Pages 351-358

The emerging role of RNA in the regulation of gene transcription in human cells

Author keywords

Concordant; Discordant; Epigenetic; Non coding RNA; Transcriptional silencing

Indexed keywords

COMPLEMENTARY RNA; DNA METHYLTRANSFERASE 3A; GENOMIC DNA; HISTONE DEACETYLASE 1; MESSENGER RNA; MICRORNA; MOLECULAR SCAFFOLD; NUCLEOLIN; OCTAMER TRANSCRIPTION FACTOR 4; PROTEIN P15; PROTEIN P21; SHORT HAIRPIN RNA; SINGLE STRANDED RNA; SMALL UNTRANSLATED RNA; TRANSCRIPTION FACTOR EZH2; TRANSCRIPTION FACTOR NANOG; UNTRANSLATED RNA;

EID: 80051884378     PISSN: 10849521     EISSN: 10963634     Source Type: Journal    
DOI: 10.1016/j.semcdb.2011.02.017     Document Type: Review
Times cited : (32)

References (44)
  • 1
    • 77954606278 scopus 로고    scopus 로고
    • Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri
    • Prochnik S.E., Umen J., Nedelcu A.M., Hallmann A., Miller S.M., Nishii I., et al. Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri. Science 2010, 329:223-226.
    • (2010) Science , vol.329 , pp. 223-226
    • Prochnik, S.E.1    Umen, J.2    Nedelcu, A.M.3    Hallmann, A.4    Miller, S.M.5    Nishii, I.6
  • 2
    • 33847698971 scopus 로고    scopus 로고
    • The relationship between non-protein-coding DNA and eukaryotic complexity
    • Taft R.J., Pheasant M., Mattick J.S. The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 2007, 29:288-299.
    • (2007) Bioessays , vol.29 , pp. 288-299
    • Taft, R.J.1    Pheasant, M.2    Mattick, J.S.3
  • 3
    • 79959346470 scopus 로고    scopus 로고
    • Non-coding RNAs, epigenetic memory, and the passage of information to progeny
    • Morris K.V. Non-coding RNAs, epigenetic memory, and the passage of information to progeny. RNA Biol 2009, 6.
    • (2009) RNA Biol , vol.6
    • Morris, K.V.1
  • 5
    • 66349129918 scopus 로고    scopus 로고
    • Regulation of imprinted expression by macro non-coding RNAs
    • Latos P.A., Barlow D.P. Regulation of imprinted expression by macro non-coding RNAs. RNA Biol 2009, 6.
    • (2009) RNA Biol , vol.6
    • Latos, P.A.1    Barlow, D.P.2
  • 6
    • 69249235745 scopus 로고    scopus 로고
    • Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome
    • Lee J.T. Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Genes Dev 2009, 23:1831-1842.
    • (2009) Genes Dev , vol.23 , pp. 1831-1842
    • Lee, J.T.1
  • 7
    • 57149110631 scopus 로고    scopus 로고
    • Bidirectional transcription directs both transcriptional gene activation and suppression in human cells
    • Morris K.V., Santoso S., Turner A.M., Pastori C., Hawkins P.G. Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet 2008, 4:e1000258.
    • (2008) PLoS Genet , vol.4
    • Morris, K.V.1    Santoso, S.2    Turner, A.M.3    Pastori, C.4    Hawkins, P.G.5
  • 8
    • 40349094597 scopus 로고    scopus 로고
    • MicroRNA-373 induces expression of genes with complementary promoter sequences
    • Place R.F., Li L.C., Pookot D., Noonan E.J., Dahiya R. MicroRNA-373 induces expression of genes with complementary promoter sequences. Proc Natl Acad Sci USA 2008, 105:1608-1613.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 1608-1613
    • Place, R.F.1    Li, L.C.2    Pookot, D.3    Noonan, E.J.4    Dahiya, R.5
  • 9
    • 38049155825 scopus 로고    scopus 로고
    • Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA
    • Yu W., Gius D., Onyango P., Muldoon-Jacobs K., Karp J., Feinberg A.P., et al. Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA. Nature 2008, 451:202-206.
    • (2008) Nature , vol.451 , pp. 202-206
    • Yu, W.1    Gius, D.2    Onyango, P.3    Muldoon-Jacobs, K.4    Karp, J.5    Feinberg, A.P.6
  • 10
    • 4344705410 scopus 로고    scopus 로고
    • Small interfering RNA-induced transcriptional gene silencing in human cells
    • Morris K.V., Chan S.W., Jacobsen S.E., Looney D.J. Small interfering RNA-induced transcriptional gene silencing in human cells. Science 2004, 305:1289-1292.
    • (2004) Science , vol.305 , pp. 1289-1292
    • Morris, K.V.1    Chan, S.W.2    Jacobsen, S.E.3    Looney, D.J.4
  • 11
    • 79959359296 scopus 로고    scopus 로고
    • Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells
    • Morris K.V. Long antisense non-coding RNAs function to direct epigenetic complexes that regulate transcription in human cells. Epigenetics 2009, 4.
    • (2009) Epigenetics , vol.4
    • Morris, K.V.1
  • 12
    • 77954517267 scopus 로고    scopus 로고
    • MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems
    • Herranz H., Cohen S.M. MicroRNAs and gene regulatory networks: managing the impact of noise in biological systems. Genes Dev 2010, 24:1339-1344.
    • (2010) Genes Dev , vol.24 , pp. 1339-1344
    • Herranz, H.1    Cohen, S.M.2
  • 13
    • 66249108936 scopus 로고    scopus 로고
    • Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells
    • Hawkins P.G., Santoso S., Adams C., Anest V., Morris K.V. Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells. Nucleic Acids Res 2009.
    • (2009) Nucleic Acids Res
    • Hawkins, P.G.1    Santoso, S.2    Adams, C.3    Anest, V.4    Morris, K.V.5
  • 14
    • 31044436469 scopus 로고    scopus 로고
    • Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region
    • Suzuki K., Shijuuku T., Fukamachi T., Zaunders J., Guillemin G., Cooper D., et al. Prolonged transcriptional silencing and CpG methylation induced by siRNAs targeted to the HIV-1 promoter region. J RNAi Gene Silencing 2005, 1:66-78.
    • (2005) J RNAi Gene Silencing , vol.1 , pp. 66-78
    • Suzuki, K.1    Shijuuku, T.2    Fukamachi, T.3    Zaunders, J.4    Guillemin, G.5    Cooper, D.6
  • 15
    • 53149132028 scopus 로고    scopus 로고
    • Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region
    • Suzuki K., Juelich T., Lim H., Ishida T., Watanebe T., Cooper D.A., et al. Closed chromatin architecture is induced by an RNA duplex targeting the HIV-1 promoter region. J Biol Chem 2008.
    • (2008) J Biol Chem
    • Suzuki, K.1    Juelich, T.2    Lim, H.3    Ishida, T.4    Watanebe, T.5    Cooper, D.A.6
  • 16
    • 63649088662 scopus 로고    scopus 로고
    • Mobilization-competent lentiviral vector-mediated sustained transcriptional modulation of HIV-1 expression
    • Turner A.M., De La Cruz J., Morris K.V. Mobilization-competent lentiviral vector-mediated sustained transcriptional modulation of HIV-1 expression. Mol Ther 2009, 17:360-368.
    • (2009) Mol Ther , vol.17 , pp. 360-368
    • Turner, A.M.1    De La Cruz, J.2    Morris, K.V.3
  • 17
    • 31044433795 scopus 로고    scopus 로고
    • The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells
    • Weinberg M.S., Villeneuve L.M., Ehsani A., Amarzguioui M., Aagaard L., Chen Z.X., et al. The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells. RNA 2006, 12:256-262.
    • (2006) RNA , vol.12 , pp. 256-262
    • Weinberg, M.S.1    Villeneuve, L.M.2    Ehsani, A.3    Amarzguioui, M.4    Aagaard, L.5    Chen, Z.X.6
  • 18
    • 77950841042 scopus 로고    scopus 로고
    • Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs
    • Malecova B., Morris K.V. Transcriptional gene silencing through epigenetic changes mediated by non-coding RNAs. Curr Opin Mol Ther 2010, 12:214-222.
    • (2010) Curr Opin Mol Ther , vol.12 , pp. 214-222
    • Malecova, B.1    Morris, K.V.2
  • 19
    • 76749108015 scopus 로고    scopus 로고
    • RNA-directed transcriptional gene silencing and activation in human cells
    • Morris K.V. RNA-directed transcriptional gene silencing and activation in human cells. Oligonucleotides 2009.
    • (2009) Oligonucleotides
    • Morris, K.V.1
  • 20
    • 79952255050 scopus 로고    scopus 로고
    • Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5
    • Hawkins P.G., Morris K.V. Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5. Transcription 2010, 1:165-175.
    • (2010) Transcription , vol.1 , pp. 165-175
    • Hawkins, P.G.1    Morris, K.V.2
  • 21
    • 10344250458 scopus 로고    scopus 로고
    • Components of the DNA methylation system of chromatin control are RNA-binding proteins
    • Jeffery L., Nakielny S. Components of the DNA methylation system of chromatin control are RNA-binding proteins. J Biol Chem 2004, 279:49479-49487.
    • (2004) J Biol Chem , vol.279 , pp. 49479-49487
    • Jeffery, L.1    Nakielny, S.2
  • 22
    • 0035873225 scopus 로고    scopus 로고
    • Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription
    • Fuks F., Burgers W.A., Godin N., Kasai M., Kouzarides T. Dnmt3a binds deacetylases and is recruited by a sequence-specific repressor to silence transcription. Embo J 2001, 20:2536-2544.
    • (2001) Embo J , vol.20 , pp. 2536-2544
    • Fuks, F.1    Burgers, W.A.2    Godin, N.3    Kasai, M.4    Kouzarides, T.5
  • 23
    • 0037423186 scopus 로고    scopus 로고
    • The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation
    • Fuks F., Hurd P.J., Wolf D., Nan X., Bird A.P., Kouzarides T. The methyl-CpG-binding protein MeCP2 links DNA methylation to histone methylation. J Biol Chem 2003, 278:4035-4040.
    • (2003) J Biol Chem , vol.278 , pp. 4035-4040
    • Fuks, F.1    Hurd, P.J.2    Wolf, D.3    Nan, X.4    Bird, A.P.5    Kouzarides, T.6
  • 25
    • 34547626629 scopus 로고    scopus 로고
    • Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells
    • Han J., Kim D., Morris K.V. Promoter-associated RNA is required for RNA-directed transcriptional gene silencing in human cells. Proc Natl Acad Sci USA 2007, 104:12422-12427.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 12422-12427
    • Han, J.1    Kim, D.2    Morris, K.V.3
  • 26
    • 77954572735 scopus 로고    scopus 로고
    • Long noncoding RNA as modular scaffold of histone modification complexes
    • Tsai M.C., Manor O., Wan Y., Mosammaparast N., Wang J.K., Lan F., et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010, 329:689-693.
    • (2010) Science , vol.329 , pp. 689-693
    • Tsai, M.C.1    Manor, O.2    Wan, Y.3    Mosammaparast, N.4    Wang, J.K.5    Lan, F.6
  • 27
    • 77953107585 scopus 로고    scopus 로고
    • Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2
    • Kanhere A., Viiri K., Araujo C.C., Rasaiyaah J., Bouwman R.D., Whyte W.A., et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. Mol Cell 2010, 38:675-688.
    • (2010) Mol Cell , vol.38 , pp. 675-688
    • Kanhere, A.1    Viiri, K.2    Araujo, C.C.3    Rasaiyaah, J.4    Bouwman, R.D.5    Whyte, W.A.6
  • 28
    • 67650921949 scopus 로고    scopus 로고
    • Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression
    • Khalil A.M., Guttman M., Huarte M., Garber M., Raj A., Rivea Morales D., et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci USA 2009, 106:11667-11672.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 11667-11672
    • Khalil, A.M.1    Guttman, M.2    Huarte, M.3    Garber, M.4    Raj, A.5    Rivea Morales, D.6
  • 29
    • 0026526181 scopus 로고
    • An antisense promoter of the murine c-myc gene is localized within intron 2
    • Spicer D.B., Sonenshein G.E. An antisense promoter of the murine c-myc gene is localized within intron 2. Mol Cell Biol 1992, 12:1324-1329.
    • (1992) Mol Cell Biol , vol.12 , pp. 1324-1329
    • Spicer, D.B.1    Sonenshein, G.E.2
  • 30
    • 48749089460 scopus 로고    scopus 로고
    • PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element
    • Ebralidze A.K., Guibal F.C., Steidl U., Zhang P., Lee S., Bartholdy B., et al. PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element. Genes Dev 2008, 22:2085-2092.
    • (2008) Genes Dev , vol.22 , pp. 2085-2092
    • Ebralidze, A.K.1    Guibal, F.C.2    Steidl, U.3    Zhang, P.4    Lee, S.5    Bartholdy, B.6
  • 32
    • 33646501507 scopus 로고    scopus 로고
    • Natural antisense noncoding RNA transcripts as potential drug targets
    • Wahlestedt C. Natural antisense noncoding RNA transcripts as potential drug targets. Drug Discov Today 2006, 11:503-508.
    • (2006) Drug Discov Today , vol.11 , pp. 503-508
    • Wahlestedt, C.1
  • 33
    • 77955452809 scopus 로고    scopus 로고
    • Long antisense non-coding RNAs and their role in transcription and oncogenesis
    • Morris K.V., Vogt P.K. Long antisense non-coding RNAs and their role in transcription and oncogenesis. Cell Cycle 2010, 9.
    • (2010) Cell Cycle , vol.9
    • Morris, K.V.1    Vogt, P.K.2
  • 34
    • 78449249135 scopus 로고    scopus 로고
    • Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse
    • Watanabe Y., Numata K., Murata S., Osada Y., Saito R., Nakaoka H., et al. Genome-wide analysis of expression modes and DNA methylation status at sense-antisense transcript loci in mouse. Genomics 2010.
    • (2010) Genomics
    • Watanabe, Y.1    Numata, K.2    Murata, S.3    Osada, Y.4    Saito, R.5    Nakaoka, H.6
  • 35
    • 69749092741 scopus 로고    scopus 로고
    • High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing
    • Hodges E., Smith A.D., Kendall J., Xuan Z., Ravi K., Rooks M., et al. High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing. Genome Res 2009, 19:1593-1605.
    • (2009) Genome Res , vol.19 , pp. 1593-1605
    • Hodges, E.1    Smith, A.D.2    Kendall, J.3    Xuan, Z.4    Ravi, K.5    Rooks, M.6
  • 36
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • Lister R., Pelizzola M., Dowen R.H., Hawkins R.D., Hon G., Tonti-Filippini J., et al. Human DNA methylomes at base resolution show widespread epigenomic differences. Nature 2009, 462:315-322.
    • (2009) Nature , vol.462 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 37
    • 77954842322 scopus 로고    scopus 로고
    • Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes
    • Wu H., Coskun V., Tao J., Xie W., Ge W., Yoshikawa K., et al. Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes. Science 2010, 329:444-448.
    • (2010) Science , vol.329 , pp. 444-448
    • Wu, H.1    Coskun, V.2    Tao, J.3    Xie, W.4    Ge, W.5    Yoshikawa, K.6
  • 38
    • 14644393684 scopus 로고    scopus 로고
    • Perspective: machines for RNAi
    • Tomari Y., Zamore P.D. Perspective: machines for RNAi. Genes Dev 2005, 19:517-529.
    • (2005) Genes Dev , vol.19 , pp. 517-529
    • Tomari, Y.1    Zamore, P.D.2
  • 39
    • 10644237968 scopus 로고    scopus 로고
    • RNAi-mediated pathways in the nucleus
    • Matzke M.A., Birchler J.A. RNAi-mediated pathways in the nucleus. Nat Rev Genet 2005, 6:24-35.
    • (2005) Nat Rev Genet , vol.6 , pp. 24-35
    • Matzke, M.A.1    Birchler, J.A.2
  • 43
    • 65549130010 scopus 로고    scopus 로고
    • Both strands of siRNA have potential to guide posttranscriptional gene silencing in mammalian cells
    • Wei J.X., Yang J., Sun J.F., Jia L.T., Zhang Y., Zhang H.Z., et al. Both strands of siRNA have potential to guide posttranscriptional gene silencing in mammalian cells. PLoS One 2009, 4:e5382.
    • (2009) PLoS One , vol.4
    • Wei, J.X.1    Yang, J.2    Sun, J.F.3    Jia, L.T.4    Zhang, Y.5    Zhang, H.Z.6
  • 44
    • 77953927651 scopus 로고    scopus 로고
    • Gene-expression forum: decoy for microRNAs
    • Rigoutsos I., Furnari F. Gene-expression forum: decoy for microRNAs. Nature 2010, 465:1016-1017.
    • (2010) Nature , vol.465 , pp. 1016-1017
    • Rigoutsos, I.1    Furnari, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.