Molecular detection of bacterial pathogens using microparticle enhanced double-stranded DNA probes

Analytical Chemistry

Volumn 83, Issue 16, 2011, Pages 6349-6354

  Riahi, Reza ^a   MacH, Kathleen E ^b,c   Mohan, Ruchika ^b,c   Liao, Joseph C ^b,c   Wong, Pak Kin ^a,d  

^a University of Arizona   (United States)

^b STANFORD UNIVERSITY   (United States)

^c VA PALO ALTO HEALTH CARE SYSTEM   (United States)

^d UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

16S RRNA; BACTERIAL CULTURES; BACTERIAL PATHOGENS; CLINICAL DIAGNOSTICS; CLINICAL MANAGEMENT; DOUBLE STRANDED DNA; INFECTIOUS DISEASE; LIMIT OF DETECTION; MICRO PARTICLES; MOLECULAR ASSAYS; MOLECULAR DETECTION; ORDERS OF MAGNITUDE; PATHOGEN DETECTION; SENSITIVE DETECTION; TARGET SEQUENCES; URINARY TRACT INFECTIONS; URINE SAMPLE;

BACTERIOLOGY; FLUOROPHORES; ORGANIC POLYMERS; PROBES; PROTEINS; RNA;

PATHOGENS;

BIOTIN; DNA; FLUORESCENT DYE; RNA 16S; STREPTAVIDIN;

ARTICLE; BIOASSAY; CHEMISTRY; DNA PROBE; ESCHERICHIA COLI; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; METABOLISM; METHODOLOGY; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION; PSEUDOMONAS; SENSITIVITY AND SPECIFICITY; STAPHYLOCOCCUS SAPROPHYTICUS; URINARY TRACT INFECTION;

BIOLOGICAL ASSAY; BIOTIN; DNA; DNA PROBES; ESCHERICHIA COLI; FLUORESCENT DYES; HUMANS; NUCLEIC ACID HYBRIDIZATION; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SENSITIVITY AND SPECIFICITY; STAPHYLOCOCCUS SAPROPHYTICUS; STREPTAVIDIN; URINARY TRACT INFECTIONS;

EID: 80051725549     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac2012575     Document Type: Article

References (43)

1. Nicolle, L. E. Infect. Med. 2001, 18, 153-162
2. Foxman, B.; Barlow, R.; DArcy, H.; Gillespie, B.; Sobel, J. D. Ann. Epidemiol. 2000, 10, 509-515
3. Liao, J. C.; Mastali, M.; Gau, V.; Suchard, M. A.; Moller, A. K.; Bruckner, D. A.; Babbitt, J. T.; Li, Y.; Gornbein, J.; Landaw, E. M.; McCabe, E. R. B.; Churchill, B. M.; Haake, D. A. J. Clin. Microbiol. 2006, 44, 561-570
4. Schappert, S. M.; Burt, C. W. Vital Health Stat. 2006, 13, 1-66
5. Zhao, Y.; Park, S.; Kreiswirth, B. N.; Ginocchio, C. C.; Veyret, R.; Laayoun, A.; Troesch, A.; Perlin, D. S. J. Clin. Microbiol. 2009, 47, 2067-2078
6. Jordan, J. A.; Durso, M. B. J. Mol. Diagn. 2005, 7, 575-581
7. Yang, S.; Lin, S.; Kelen, G. D.; Quinn, T. C.; Dick, J. D.; Gaydos, C. A.; Rothman, R. E. J. Clin. Microbiol. 2002, 40, 3449-3454
8. Joung, H. A.; Lee, N. R.; Lee, S. K.; Ahn, J.; Shin, Y. B.; Choi, H. S.; Lee, C. S.; Kim, S.; Kim, M. G. Anal. Chim. Acta 2008, 630, 168-173
9. Frye, J. G.; Jesse, T.; Long, F.; Rondeau, G.; Porwollik, S.; McClelland, M.; Jackson, C. R.; Englen, M.; Fedorka-Cray, P. J. Int. J. Antimicrob. Agents 2006, 27, 138-151
10. Allen, K. J.; Poppe, C. Can. J. Vet. Res. 2002, 66, 137-144
11. Nogales, B.; Timmis, K. N.; Nedwell, D. B.; Osborn, A. M. Appl. Environ. Microb. 2002, 68, 5017-5025
12. Gikunju, C. M.; Lev, S. M.; Birenzvige, A.; Schaefer, D. M. Talanta 2004, 62, 741-744
13. Wang, Z. P.; Russon, L.; Li, L.; Roser, D. C.; Long, S. R. Rapid Commun. Mass Spectrom. 1998, 12, 456-464
14. Tyagi, S.; Kramer, F. R. Nat. Biotechnol. 1996, 14, 303-308
15. Bao, G.; Tsourkas, A.; Santangelo, P. Abstr. Pap. Am. Chem. Soc. 2003, 225, U982-U982
16. Li, N.; Wong, P. K. Bioanalysis 2010, 2, 1689-1699
17. Fuller, N. J.; Marie, D.; Partensky, F.; Vaulot, D.; Post, A. F.; Scanlan, D. J. Appl. Environ. Microbiol. 2003, 69, 2430-2443
18. Manero, A.; Blanch, A. R. J. Microbiol. Methods 2002, 50, 115-121
19. Hsieh, C. C.; Huang, S. B.; Wu, P. C.; Shieh, D. B.; Lee, G. B. Biomed. Microdevices 2009, 11, 903-913
20. Blair, R. H.; Rosenblum, E. S.; Dawson, E. D.; Kuchta, R. D.; Kuck, L. R.; Rowlen, K. L. Anal. Biochem. 2007, 362, 213-220
21. Crockett, A. O.; Wittwer, C. T. Anal. Biochem. 2001, 290, 89-97
22. Nutiu, R.; Li, Y. F. J. Am. Chem. Soc. 2003, 125, 4771-4778
23. Nutiu, R.; Li, Y. F. Angew. Chem., Int. Ed. 2005, 44, 1061-1065
24. Li, N.; Ho, C. M. J. Am. Chem. Soc. 2008, 130, 2380-2381
25. Li, Q. Q.; Luan, G. Y.; Guo, Q. P.; Liang, J. X. Nucleic Acids Res. 2002, 30, e5
26. Gidwani, V.; Riahi, R.; Zhang, D. D.; Wong, P. K. Analyst 2009, 134, 1675-1681
27. Meserve, D.; Wang, Z.; Zhang, D. D.; Wong, P. K. Analyst 2008, 133, 1013-1019
28. Wang, Z.; Gidwani, V.; Sun, Z.; Zhang, D. D.; Wong, P. K. J. Assoc. Lab. Autom. 2008, 13, 243-248
29. Wang, Z.; Gidwani, V.; Zhang, D. D.; Wong, P. K. Analyst 2008, 133, 998-1000
30. Chiu, M. L.; Lawi, W.; Snyder, S. T.; Wong, P. K.; Liao, J. C.; Gau, V. J. Assoc. Lab. Autom. 2010, 15, 233-242
31. Mariella, R. Biomed. Microdevices 2008, 10, 777-784
32. Delong, E. F.; Wickham, G. S.; Pace, N. R. Science 1989, 243, 1360-1363
33. Fuchs, B. M.; Wallner, G.; Beisker, W.; Schwippl, I.; Ludwig, W.; Amann, R. Appl. Environ. Microb. 1998, 64, 4973-4982
34. Neidhardt, F.; Umbarger, H. Chemical composition of Escherichia coli. In Escherichia coli and Salmonella typhimurium, 2nd ed.; ASM Press: Washington, D.C., 1996; Vol. I, pp 13-16.
35. Sun, C. P.; Liao, J. C.; Zhang, Y. H.; Gau, V.; Mastali, M.; Babbitt, J. T.; Grundfest, W. S.; Churchill, B. M.; McCabe, E. R. B.; Haake, D. A. Mol. Genet. Metab. 2005, 84, 90-99
36. Relman, D. A. Science 1999, 284, 1308-1310
37. Lagally, E. T.; Lee, S. H.; Soh, H. T. Lab Chip 2005, 5, 1053-1058
38. Gau, J. J.; Lan, E. H.; Dunn, B.; Ho, C. M.; Woo, J. C. S. Biosens. Bioelectron. 2001, 16, 745-755
39. Horejsh, D.; Martini, F.; Poccia, F.; Ippolito, G.; Di Caro, A.; Capobianchi, M. R. Nucleic Acids Res. 2005, 33, e13
40. Ali, M. F.; Kirby, R.; Goodey, A. P.; Rodriguez, M. D.; Ellington, A. D.; Neikirk, D. P.; McDevitt, J. T. Anal. Chem. 2003, 75, 4732-4739
41. Wang, T. H.; Wong, P. K. J. Assoc. Lab. Autom. 2010, 15, A15-A16
42. Gao, J.; Sin, M. L. Y.; Liu, T.; Gau, V.; Liao, J. C.; Wong, P. K. Lab Chip 2011, 11, 1770-1775
43. Chen, C. H.; Lu, Y.; Sin, M. L. Y.; Mach, K. E.; Zhang, D. D.; Gau, V.; Liao, J. C.; Wong, P. K. Anal. Chem. 2010, 82, 1012-1019