In vitro selection of structure-switching signaling aptamers

Angewandte Chemie - International Edition

Volumn 44, Issue 7, 2005, Pages 1061-1065

  Nutiu, Razvan ^a   Li, Yingfu ^a  

^a MCMASTER UNIVERSITY   (Canada)

Author keywords

Aptamers; Fluorescence; In vitro selection; Nucleic acids; Sensors

Indexed keywords

APTAMERS; FLUORESCENCE SIGNALING; REAL TIME SENSING;

FLUORESCENCE; PROBES; QUENCHING; REAL TIME SYSTEMS; SIGNAL PROCESSING;

DNA;

APTAMER; FLUOROPHORE; UNCLASSIFIED DRUG;

ARTICLE; CHEMICAL STRUCTURE; DNA DETERMINATION; DNA STRAND; DNA STRUCTURE; FLUORESCENCE; IN VITRO STUDY; SENSOR; SIGNAL TRANSDUCTION; STRUCTURE ANALYSIS;

ADENOSINE TRIPHOSPHATE; APTAMERS, NUCLEOTIDE; BASE SEQUENCE; FLUORESCENT DYES; GENE LIBRARY; GUANOSINE TRIPHOSPHATE; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; SEQUENCE ALIGNMENT; SIGNAL TRANSDUCTION;

EID: 15444375312     PISSN: 14337851     EISSN: None     Source Type: Journal    
DOI: 10.1002/anie.200461848     Document Type: Article

References (28)

1. a) S. D. Jayasena, Clin. Chem. 1999, 45, 1628-1650;
2. b) L. S. Green, C. Bell, N. Janjic, Biotechniques 2001, 30, 1094-1110;
3. c) M. Famulok, M. Blind, G. Mayer, Chem. Biol. 2001, 8, 931-939;
4. d) P. Burgstaller, A. Jenne, M. Blind, Curr. Opin. Drug Discov. Dev. 2002, 5, 690-700;
5. e) X. Fang, A. Sen, M. Vicens, W. Tan, ChemBioChem 2003, 4, 829-834;
6. f) R. Nutiu, J. M. Yu, Y. Li, ChemBioChem 2004, 5, 1139-1144;
7. g) J. Srinivasan, S. T. Cload, N. Hamaguchi, J. Kurz, S. Keene, M. Kurz, R. M. Boomer, J. Blanchard, D. Epstein, C. Wilson, J. L. Diener, Chem. Biol. 2004, 11, 499-508.
8. a) C. Tuerk, L. Gold, Science 1990, 249, 505-510;
9. b) A. D. Ellington, J. W. Szostak, Nature 1990, 346, 818-822.
10. a) S. Jhaveri, R. Kirby, R. Conrad, E. Maglott, M. Bowser, R. T. Kennedy, G. Glick, A. D. Ellington, J. Am. Chem. Soc. 2000, 122, 2469-2473;
11. b) R. Yamamoto, T. Baba, P. K. Kumar, Genes Cells 2000, 5, 389-396;
12. c) M. N. Stojanovic, P. de Prada, D. W. Landry, J. Am. Chem. Soc. 2000, 122, 11547-11548;
13. d) N. Hamaguchi, A. Ellington, M. Stanton, Anal. Biochem. 2001, 294, 126-131;
14. e) M. N. Stojanovic, P. de Prada, D. W. Landry, J. Am. Chem. Soc. 2001, 123, 4928-4931;
15. f) J. J. Li, X. Fang, W. Tan, Biochem. Biophys. Res. Commun. 2002, 292, 31-40;
16. g) J. R. Babendure, S. R. Adams, R. Y. Tsien, J. Am. Chem. Soc. 2003, 125, 14716-14717;
17. h) K. Yamana, Y. Ohtani, H. Nakano, I. Saito, Bioorg. Med. Chem. Lett. 2003, 13, 3429-3431;
18. i) E. J. Merino, K. M. Weeks, J. Am. Chem. Soc. 2003, 125, 12370-12371;
19. j) M. N. Stojanovic, D. M. Kolpashchikov, J. Am. Chem. Soc. 2004, 126, 9266-9270.
20. S. Jhaveri, M. Rajendran, A. D. Ellington, Nat. Biotechnol 2000, 18, 1293-1297.
21. M. Rajendran, A. D. Ellington, Nucleic Acids Res. 2003, 31, 5700-5713.
22. a) R. Nutiu, Y. Li, J. Am. Chem. Soc. 2003, 125, 4771-4778;
23. b) R. Nutiu, Y. Li, Chem. Eur. J. 2004, 10, 1868-1876.
24. D. E. Huizenga, J. W. Szostak, Biochemistry 1995, 34, 656-665.
25. C. H. Lin, D. J. Patel, Chem. Biol. 1997, 4, 817-832.
26. a) K. Salehi-Ashtiani, J. W. Szostak, Nature 2001, 414, 82-84;
27. b) D. Saran, J. Frank, D. H. Burke, BMC Evol. Biol. 2003, 3, 26;
28. c) R. P. Cruz, J. B. Withers, Y. Li, Chem. Biol. 2004, 11, 57-67.