Annelid Distal-less/Dlx duplications reveal varied post-duplication fates

BMC Evolutionary Biology

Volumn 11, Issue 1, 2011, Pages

  McDougall, Carmel ^a,b,c   Korchagina, Natalia ^b   Tobin, Jonathan L ^b   Ferrier, David E K ^a  

^a UNIVERSITY OF ST ANDREWS   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTHROPOD; EVOLUTIONARY BIOLOGY; GENE EXPRESSION; GENOME; PHYLOGENETICS; PHYLOGENY; POLYCHAETE; VERTEBRATE;

ANIMALIA; ANNELIDA; ARTHROPODA; CAPITELLA; CHORDATA; HELOBDELLA ROBUSTA; PLATYNEREIS DUMERILII; POLYCHAETA; POMATOCEROS LAMARCKI; VERTEBRATA;

HOMEODOMAIN PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CHEMISTRY; CLASSIFICATION; GENE CONVERSION; GENE DUPLICATION; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; POLYCHAETA; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; ANIMALS; EVOLUTION, MOLECULAR; GENE CONVERSION; GENE DUPLICATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HOMEODOMAIN PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYCHAETA; SEQUENCE ALIGNMENT;

EID: 80051634347     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-11-241     Document Type: Article

References (93)

1. Distal-less encodes a homeodomain protein required for limb development in Drosophila. Cohen SM, Bronner G, Kuttner F, Jurgens G, Jackle H, Nature 1989 338 432 434 10.1038/338432a0 2564639 (Pubitemid 19089325)
2. Developmental functions of the Distal-less/Dlx homeobox genes. Panganiban GEF, Rubenstein JLR, Development 2002 129 4371 4386 12223397 (Pubitemid 35203722)
3. The origin and evolution of animal appendages. Panganiban GEF, Irvine SQ, Lowe CJ, Roehl H, Corley LS, Sherbon B, Grenier JK, Fallon JF, Kimble J, Walker M, Wray GA, Swalla BJ, Martindale MQ, Carroll SB, Proc Natl Acad Sci USA 1997 94 5162 5166 10.1073/pnas.94.10.5162 9144208 (Pubitemid 27214754)
4. Proximal-distal pattern formation in Drosophila: cell autonomous requirement for Distal-less gene activity in limb development. Cohen SM, Jürgens G, EMBO J 1989 8 2045 2055 16453891 (Pubitemid 19273533)
5. Distal-less expression in embryos of Limulus polyplremus (Chelicerata, Xiphosura) and Lepisma saccharina (Insecta, Zygentoma) suggests a role in the development of mechanoreceptors, chemoreceptors, and the CNS. Mittmann B, Scholtz G, Dev Genes Evol 2001 211 232 243 10.1007/s004270100150 11455438 (Pubitemid 32821507)
6. The Caenorhabditis elegans Distal-less ortholog ceh-43 is required for development of the anterior hypodermis. Aspock G, Burglin TR, Dev Dyn 2001 222 403 409 10.1002/dvdy.1201 11747075 (Pubitemid 33042139)
7. Unwrapping glial biology: Gcm target genes regulating glial development, diversification, and function. Freeman MR, Delrow J, Kim J, Johnson E, Doe CQ, Neuron 2003 38 567 580 10.1016/S0896-6273(03)00289-7 12765609 (Pubitemid 36645032)
8. Isolation and characterization of a Xenopus cDNA which encodes a homeodomain highly homologous to Drosophila Distal-Less. Asano M, Emori Y, Saigo K, Shiokawa K, The Journal of Biological Chemistry 1992 267 5044 5047 1347527
9. Expression of Distal-less in molluscan eggs, embryos, and larvae. Lee SE, Jacobs DK, Evolution & Development 1999 1 172 179 21850479 (Pubitemid 129692243)
10. Sequence and developmental expression of AmphiDII, an amphioxus Distal-less gene transcribed in the ectoderm, epidermis and nervous system: Insights into evolution of craniate forebrain and neural crest. Holland ND, Panganiban GEF, Henyey EL, Holland LZ, Development 1996 122 2911 2920 8787764 (Pubitemid 26326522)
11. Evolution of Antp-class genes and differential expression of Hydra Hox/paraHox genes in anterior patterning. Gauchat D, Mazet F, Berney C, Schummer M, Kreger S, Pawlowski J, Galliot B, Proc Natl Acad Sci USA 2000 97 4493 4498 10.1073/pnas.97.9.4493 10781050 (Pubitemid 30238585)
12. The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis. Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR, Genome Biol 2006 7 64 10.1186/gb-2006-7-7-r64 16867185 (Pubitemid 44501980)
13. Pre-bilaterian origins of the Hox cluster and the Hox code: Evidence from the sea anemone, Nematostella vectensis. Ryan JF, Mazza ME, Pang K, Matus DQ, Baxevanis AD, Martindale MQ, Finnerty JR, PLoS ONE 2007 2 153 10.1371/journal.pone.0000153 17252055
14. A low diversity of ANTP class homeobox genes in Placozoa. Monteiro AS, Schierwater B, Dellaporta SL, Holland PWH, Evolution & Development 2006 8 174 182 21850479
15. Genesis and expansion of metazoan transcription factor gene classes. Larroux C, Luke GN, Koopman P, Rokhsar DS, Shimeld SM, Degnan BM, Mol Biol Evol 2008 25 980 996 10.1093/molbev/msn047 18296413
16. Identification and characterization of homeobox transcription factor genes in Strongylocentrotus purpuratus, and their expression in embryonic development. Howard-Ashby M, Materna SC, Brown CT, Chen L, Cameron RA, Davidson EH, Dev Biol 2006 300 74 89 10.1016/j.ydbio.2006.08.039 17055477 (Pubitemid 44830128)
17. The evolution of the vertebrate Dlx gene family. Stock DW, Ellies DL, Zhao ZY, Ekker M, Ruddle FH, Weiss KM, Proc Natl Acad Sci USA 1996 93 10858 10863 10.1073/pnas.93.20.10858 8855272 (Pubitemid 26333081)
18. Zebrafish hox clusters and vertebrate genome evolution. Amores A, Force A, Yan YL, Joly L, Amemiya C, Fritz A, Ho RK, Langeland JA, Prince V, Wang YL, Westerfield M, Ekker M, Postlethwait JH, Science 1998 282 1711 1714 9831563 (Pubitemid 28549287)
19. Relationship between the genomic organization and the overlapping embryonic expression patterns of the zebrafish Dlx genes. Ellies DL, Stock DW, Hatch G, Giroux G, Weiss KM, Ekker M, Genomics 1997 45 580 590 10.1006/geno.1997.4978 9367683 (Pubitemid 27506133)
20. Non-overlapping expression patterns of the clustered Dll-A/B genes in the ascidian Ciona intestinalis. Irvine SQ, Cangiano MC, Millette BJ, Gutter ES, J Exp Zool B Mol Dev Evol 2007 308B 428 441 10.1002/jez.b.21169 (Pubitemid 47235353)
21. Chromosomal mapping of ANTP class homeobox genes in amphioxus: piecing together ancestral genomes. Castro LFC, Holland PWH, Evolution & Development 2003 5 459 465 21850479 (Pubitemid 37143922)
22. Larval RNAi applied to the analysis of postembryonic development in the ladybird beetle, Harmonia axyridis. Niimi T, Kuwayama H, Yaginuma T, Journal of Insect Biotechnology and Sericology 2005 74 95 102 (Pubitemid 41749233)
23. Double-stranded RNA interference in the spider Cupiennius salei: the role of Distal-less is evolutionarily conserved in arthropod appendage formation. Schoppmeier M, Damen WG, Dev Genes Evol 2001 211 76 82 10.1007/s004270000121 11455417 (Pubitemid 32821486)
24. The pattern of Distal-less expression in the mouthparts of crustaceans, myriapods and insects: new evidence for a gnathobasic mandible and the common origin of Mandibulata. Scholtz G, Mittmann B, Gerberding M, Int J Dev Biol 1998 42 801 810 9727836 (Pubitemid 28404916)
25. The development of crustacean limbs and the evolution of arthropods. Panganiban GEF, Sebring A, Nagy LM, Carroll SB, Science 1995 270 1363 1366 10.1126/science.270.5240.1363 7481825 (Pubitemid 26454047)
26. The isolation of a Distal-less gene fragment from two molluscs. Lee SE, Gates RD, Jacobs DK, Dev Genes Evol 2001 211 506 508 10.1007/s00427-001-0184-1 11702201 (Pubitemid 33072136)
27. Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in Bilateria. Denes AS, Jékely G, Steinmetz PR, Raible F, Snyman H, Prud'homme B, Ferrier DEK, Balavoine G, Arendt D, Cell 2007 129 277 288 10.1016/j.cell.2007.02.040 17448990 (Pubitemid 46584732)
28. Expression of Distal-less, dachshund, and optomotor blind in Neanthes arenaceodentata (Annelida, Nereididae) does not support homology of appendage-forming mechanisms across the Bilateria. Winchell CJ, Valencia JE, Jacobs DK, Dev Genes Evol 2010
29. Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii. Raible F, Tessmar-Raible K, Osoegawa K, Wincker P, Jubin C, Balavoine G, Ferrier DEK, Benes V, de Jong P, Weissenbach J, Bork P, Arendt D, Science 2005 310 1325 1326 10.1126/science.1119089 16311335 (Pubitemid 41698863)
30. Prediction of complete gene structures in human genomic DNA. Burge C, Karlin S, J Mol Biol 1997 268 78 94 10.1006/jmbi.1997.0951 9149143 (Pubitemid 27192680)
31. Isolation and characterization of retrotransposition-competent LINEs from zebrafish. Sugano T, Kajikawa M, Okada N, Gene 2006 365 74 82 16356661 (Pubitemid 43185226)
32. GENECONV: A computer package for the statistical detection of gene conversion. Sawyer S, Book GENECONV: A computer package for the statistical detection of gene conversion City: Distributed by the author, Department of Mathematics, Washington University in St Louis 1999 (Editor ed. eds.)
33. A conserved region of engrailed, shared among all en-, gsc-, Nk1-, Nk2- and msh-class homeoproteins, mediates active transcriptional repression in vivo. Smith ST, Jaynes JB, Development 1996 122 3141 3150 8898227 (Pubitemid 26371979)
34. Optimal activation of an endogenous gene by HOX11 requires the NH2-terminal 50 amino acids. Masson N, Greene WK, Rabbitts TH, Mol Cell Biol 1998 18 3502 3508 9584190 (Pubitemid 28240522)
35. Novel murine homeo box gene on chromosome 1 expressed in specific hematopoietic lineages and during embryogenesis. Allen JD, Lints T, Jenkins NA, Copeland NG, Strasser A, Harvey RP, Adams JM, Genes Dev 1991 5 509 520 10.1101/gad.5.4.509 1672660 (Pubitemid 21905973)
36. Evolution of homeobox genes: Q50 Paired-like genes founded the Paired class. Galliot B, de Vargas C, Miller DJ, Dev Genes Evol 1999 209 186 197 10.1007/s004270050243 10079362 (Pubitemid 29116596)
37. NK-2 homeobox genes and heart development. Harvey RP, Dev Biol 1996 178 203 216 10.1006/dbio.1996.0212 8812123 (Pubitemid 26365032)
38. A comprehensive classification of homeobox genes. Bürglin TR, Guidebook to the Homeobox Genes Oxford: Oxford University Press, Duboule D, 1994
39. The Gfi-1 proto-oncoprotein contains a novel transcriptional repressor domain, SNAG, and inhibits G1 arrest induced by interleukin-2 withdrawal. Grimes HL, Chan TO, Zweidler-McKay PA, Tong B, Tsichlis PN, Mol Cell Biol 1996 16 6263 6272 8887656 (Pubitemid 26360986)
40. Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins. Watada H, Mirmira RG, Kalamaras J, German MS, Proc Natl Acad Sci USA 2000 97 9443 9448 10944215 (Pubitemid 30650794)
41. A transcriptional modification motif encoded by homeobox and fork head genes. Shimeld SM, FEBS Lett 1997 410 124 125 10.1016/S0014-5793(97)00632-7 9237613 (Pubitemid 27304048)
42. The NK homeobox gene cluster of Branchiostoma floridae. Luke GN, Thesis University of Reading, School of Biological Sciences 2004
43. Early evolution of homeobox genes. Monteiro AS, Thesis Universidade do Porto, Instituto de Ciências Biomédicas de Abel Salazar 2006
44. Homeodomain to hexapeptide or PBC-interaction-domain distance: size apparently matters. der Rieden PM, Mainguy G, Woltering JM, Durston AJ, Trends Genet 2004 20 76 79 10.1016/j.tig.2003.12.001 14746988 (Pubitemid 38121358)
45. Pbx proteins display hexapeptide-dependent cooperative DNA binding with a subset of Hox proteins. Chang CP, Shen WF, Rozenfeld S, Lawrence HJ, Largman C, Cleary ML, Gene Dev 1995 9 663 674 10.1101/gad.9.6.663 7729685
46. Pbx raises the DNA binding specificity but not the selectivity of antennapedia Hox proteins. Neuteboom ST, Murre C, Mol Cell Biol 1997 17 4696 4706 9234726 (Pubitemid 27318145)
47. The Dlx gene complement of the leopard shark, Triakis semifasciata, resembles that of mammals: Implications for genomic and morphological evolution of jawed vertebrates. Stock DW, Genetics 2005 169 807 817 10.1534/genetics.104. 031831 15489533 (Pubitemid 40404312)
48. Phylogenomic analyses unravel annelid evolution. Struck TH, Paul C, Hill N, Hartmann S, Hösel C, Kube M, Lieb B, Meyer A, Tiedemann R, Purschke G, Bleidorn C, Nature 2011 471 95 98 10.1038/nature09864 21368831
49. The evolution of hexapod engrailed-family genes: evidence for conservation and concerted evolution. Peel AD, Telford MJ, Akam M, Proc Biol Sci 2006 273 1733 1742 10.1098/rspb.2006.3497 16790405 (Pubitemid 46931029)
50. Convergent evolution of clustering of Iroquois homeobox genes across metazoans. Irimia M, Maeso I, Garcia-Fernndez J, Mol Biol Evol 2008 25 1521 1525 10.1093/molbev/msn109 18469332 (Pubitemid 352019844)
51. Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae. Takatori N, Butts T, Candiani S, Pestarino M, Ferrier DEK, Saiga H, Holland PWH, Dev Genes Evol 2008
52. Regulation of Dlx3 gene expression in visceral arches by evolutionarily conserved enhancer elements. Sumiyama K, Ruddle FH, Proc Natl Acad Sci USA 2003 100 4030 4034 10.1073/pnas.0530119100 12642674 (Pubitemid 36418151)
53. Regulatory roles of conserved intergenic domains in vertebrate Dlx bigene clusters. Ghanem N, Jarinova O, Amores A, Long QM, Hatch G, Park BK, Rubenstein JLR, Ekker M, Genome Res 2003 13 533 543 10.1101/gr.716103 12670995 (Pubitemid 36511913)
54. Intergenic enhancers with distinct activities regulate Dlx gene expression in the mesenchyme of the branchial arches. Park BK, Sperber SM, Choudhury A, Ghanem N, Hatch GT, Sharpe PT, Thomas BL, Ekker M, Dev Biol 2004 268 532 545 10.1016/j.ydbio.2004.01.010 15063187 (Pubitemid 38519863)
55. Genomic structure and functional control of the Dlx3-7 bigene cluster. Sumiyama K, Irvine SQ, Stock DW, Weiss KM, Kawasaki K, Shimizu N, Shashikant CS, Miller W, Ruddle FH, Proc Natl Acad Sci USA 2002 99 780 785 10.1073/pnas.012584999 11792834 (Pubitemid 34106587)
56. Positive cross-regulation and enhancer sharing: two mechanisms for specifying overlapping Hox expression patterns. Gould A, Morrison A, Sproat G, White RA, Krumlauf R, Genes Dev 1997 11 900 913 10.1101/gad.11.7.900 9106661 (Pubitemid 27175296)
57. Mechanisms of Hox gene colinearity: transposition of the anterior Hoxb1 gene into the posterior HoxD complex. Kmita M, van Der Hoeven F, Zákány J, Krumlauf R, Duboule D, Genes Dev 2000 14 198 211 10652274 (Pubitemid 30070985)
58. Organizing axes in time and space; 25 years of colinear tinkering. Kmita M, Duboule D, Science 2003 301 331 333 10.1126/science.1085753 12869751 (Pubitemid 36877058)
59. Selectivity, sharing and competitive interactions in the regulation of Hoxb genes. Sharpe J, Nonchev S, Gould A, Whiting J, Krumlauf R, EMBO J 1998 17 1788 1798 10.1093/emboj/17.6.1788 9501100 (Pubitemid 28119132)
60. The double-strand-break repair model for recombination. Szostak JW, Orr-Weaver TL, Rothstein RJ, Stahl FW, Cell 1983 33 25 35 10.1016/0092-8674(83) 90331-8 6380756 (Pubitemid 13096431)
61. Precise limitation of concerted evolution to ORFs in mosquito Hsp82 genes. Benedict MQ, Levine BJ, Ke ZX, Cockburn AF, Seawright JA, Insect Mol Biol 1996 5 73 79 10.1111/j.1365-2583.1996.tb00042.x 8630537
62. Evolution of the 87A and 87C heat-shock loci in Drosophila. Leigh Brown AJ, Ish-Horowicz D, Nature 1981 290 677 682 10.1038/290677a0 6261150 (Pubitemid 11068956)
63. Concerted evolution of duplicated protein-coding genes in Drosophila. Hickey DA, Bally-Cuif L, Abukashawa S, Payant V, Benkel BF, Proc Natl Acad Sci USA 1991 88 1611 1615 10.1073/pnas.88.5.1611 1900365 (Pubitemid 21916275)
64. Molecular evolution of the duplicated Amy locus in the Drosophila melanogaster species subgroup: concerted evolution only in the coding region and an excess of nonsynonymous substitutions in speciation. Shibata H, Yamazaki T, Genetics 1995 141 223 236 8536970
65. Concerted evolution within a trypsin gene cluster in Drosophila. Wang S, Magoulas C, Hickey D, Mol Biol Evol 1999 16 1117 1124 10486967 (Pubitemid 29409856)
66. Concerted evolution of two novel protein families in Caenorhabditis species. Thomas JH, Genetics 2006 172 2269 2281 16415360
67. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes. Rozen S, Skaletsky H, Marszalek JD, Minx PJ, Cordum HS, Waterston RH, Wilson RK, Page DC, Nature 2003 423 873 876 10.1038/nature01723 12815433 (Pubitemid 36781279)
68. Concerted evolution of sea anemone neurotoxin genes is revealed through analysis of the Nematostella vectensis genome. Moran Y, Weinberger H, Sullivan JC, Reitzel AM, Finnerty JR, Gurevitz M, Mol Biol Evol 2008 25 737 747 10.1093/molbev/msn021 18222944 (Pubitemid 351398330)
69. Finely orchestrated movements: evolution of the ribosomal RNA genes. Eickbush TH, Eickbush DG, Genetics 2007 175 477 485 10.1534/genetics.107.071399 17322354 (Pubitemid 46798252)
70. Gene conversion in the rice genome. Xu S, Clark T, Zheng H, Vang S, Li R, Wong GK, Wang J, Zheng X, BMC Genomics 2008 9 93 10.1186/1471-2164-9-93 18298833 (Pubitemid 351472482)
71. Sequence-dependent gene conversion: can duplicated genes diverge fast enough to escape conversion? Walsh JB, Genetics 1987 117 543 557 3692140
72. Identifying concerted evolution and gene conversion in mammalian gene pairs lasting over 100 million years. Carson AR, Scherer SW, BMC Evol Biol 2009 9 156 10.1186/1471-2148-9-156 19583854
73. Gene conversion tracts in Saccharomyces cerevisiae can be extremely short and highly directional. Palmer S, Schildkraut E, Lazarin R, Nguyen J, Nickoloff JA, Nucleic Acids Res 2003 31 1164 1173 10.1093/nar/gkg219 12582235 (Pubitemid 36284957)
74. Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila. Beisswanger S, Stephan W, Proc Natl Acad Sci USA 2008 105 5447 5452 10.1073/pnas.0710892105 18381818 (Pubitemid 351753883)
75. Impaired nuclear import of mammalian Dlx4 proteins as a consequence of rapid sequence divergence. Coubrough ML, Bendall AJ, Exp Cell Res 2006 312 3880 3891 10.1016/j.yexcr.2006.08.023 17011548 (Pubitemid 44633887)
76. Evolutionary dynamics of recently duplicated genes: selective constraints on diverging paralogs in the Drosophila pseudoobscura genome. Meisel RP, J Mol Evol 2009 69 81 93 10.1007/s00239-009-9254-1 19536449
77. Neurogenesis in an annelid: characterization of brain neural precursors in the polychaete Capitella sp. I. Meyer NP, Seaver EC, Dev Biol 2009 335 237 252 10.1016/j.ydbio.2009.06.017 19540831
78. Elav. Soller M, White K, Curr Biol 2004 14 53 10.1016/j.cub.2003.12.041 14738746 (Pubitemid 38211233)
79. Whole-mount in situ hybridization of small invertebrate embryos using laboratory mini-columns. Irvine SQ, BioTechniques 2007 43 764 768 10.2144/000112617 18251252 (Pubitemid 350303582)
80. Gene silencing in the spider mite Tetranychus urticae: dsRNA and siRNA parental silencing of the Distal-less gene. Khila A, Grbi M, Dev Genes Evol 2007 217 241 251 10.1007/s00427-007-0132-9 17262226 (Pubitemid 46351420)
81. Radical alterations in the roles of homeobox genes during echinoderm evolution. Lowe CJ, Wray GA, Nature 1997 389 718 721 10.1038/39580 9338781 (Pubitemid 27458956)
82. The ephrin VAB-2/EFN-1 functions in neuronal signaling to regulate epidermal morphogenesis in C. elegans. Chin-Sang ID, George SE, Ding M, Moseley SL, Lynch AS, Chisholm AD, Cell 1999 99 781 790 10.1016/S0092-8674(00)81675-X 10619431 (Pubitemid 30017648)
83. The development of the larval nervous system, musculature and ciliary bands of Pomatoceros lamarckii (Annelida): heterochrony in polychaetes. McDougall C, Chen WC, Shimeld SM, Ferrier DEK, Front Zool 2006 3 16 10.1186/1742-9994-3-16 17032451 (Pubitemid 44611133)
84. Sambrook J, Russell DW, Molecular Cloning: A Laboratory Manual New York: Cold Spring Harbor 3 2001
85. BBEdit Lite. Siegel R, Woolsey P, Correia J, Hueras J, Kalkwarf S, Book BBEdit Lite City: Bare Bones Software 6.1.2 2001 (Editor ed. eds.)
86. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, Nucleic Acids Res 1997 25 4876 4882 10.1093/nar/25.24.4876 9396791 (Pubitemid 28022245)
87. Se-Al. Rambaut A, Book Se-Al City 1996 (Editor ed.eds.) v2.0a11 edition
88. PHYLIP (Phylogeny Inference Package). Felsenstein J, Book PHYLIP (Phylogeny Inference Package) City: Department of Genetics, University of Washington 1995 (Editor ed.eds.)
89. MRBAYES: Bayesian inference of phylogenetic trees. Huelsenbeck JP, Ronquist F, Bioinformatics 2001 17 754 755 10.1093/bioinformatics/17.8.754 11524383 (Pubitemid 32851390)
90. FigTree. Rambaut A, Book FigTree City: University of Edinburgh 1.1.1 2006 (Editor ed.eds.)
91. The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences. Brudno M, Steinkamp R, Morgenstern B, Nucleic Acids Res 2004 32 41 44 10.1093/nar/gkh361 15215346 (Pubitemid 38997296)
92. Expression of a Scr/Hox5 gene in the larval central nervous system of the gastropod Haliotis, a non-segmented spiralian lophotrochozoan. Giusti AF, Hinman VF, Degnan SM, Degnan BM, Morse DE, Evol Dev 2001 2 294 302
93. WebLogo: a sequence logo generator. Crooks GE, Hon G, Chandonia J-M, Brenner SE, Genome Res 2004 14 1188 1190 10.1101/gr.849004 15173120 (Pubitemid 38811555)