-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
DOI 10.1126/science.287.5461.2185
-
MD Adams SE Celniker RA Holt CA Evans JD Gocayne PG Amanatides SE Scherer PW Li RA Hoskins RF Galle RA George SE Lewis S Richards M Ashburner SN Henderson GG Sutton JR Wortman MD Yandell Q Zhang LX Chen RC Brandon Y-HC Rogers RG Blazej M Champe BD Pfeiffer KH Wan C Doyle EG Baxter G Helt CR Nelson GL Gabor Miklos JF Abril A Agbayani H-J An C Andrews-Pfannkoch D Baldwin RM Ballew A Basu J Baxendale L Bayraktaroglu EM Beasley KY Beeson PV Benos BP Berman D Bhandari S Bolshakov D Borkova MR Botchan J Bouck P Brokstein P Brottier KC Burtis DA Busam H Butler E Cadieu A Center I Chandra JM Cherry S Cawley C Dahlke LB Davenport P Davies Pablos Bd A Delcher Z Deng AD Mays I Dew SM Dietz K Dodson LE Doup M Downes S Dugan-Rocha BC Dunkov P Dunn KJ Durbin CC Evangelista C Ferraz S Ferriera W Fleischmann C Fosler AE Gabrielian NS Garg WM Gelbart K Glasser A Glodek F Gong JH Gorrell Z Gu P Guan M Harris NL Harris D Harvey TJ Heiman JR Hernandez J Houck D Hostin KA Houston TJ Howland M-H Wei C Ibegwam 2000 The genome sequence of Drosophila melanogaster Science 287 2185 2195 (Pubitemid 30177013)
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
George, R.A.11
Lewis, S.E.12
Richards, S.13
Ashburner, M.14
Henderson, S.N.15
Sutton, G.G.16
Wortman, J.R.17
Yandell, M.D.18
Zhang, Q.19
Chen, L.X.20
Brandon, R.C.21
Rogers, Y.C.22
Blazej, R.G.23
Champe, M.24
Pfeiffer, B.D.25
Wan, K.H.26
Doyle, C.27
Baxter, E.G.28
Helt, G.29
Nelson, C.R.30
Gabor Miklos, G.L.31
Abril, J.F.32
Agbayani, A.33
An, H.-J.34
Andrews-Pfannkoch, C.35
Baldwin, D.36
Ballew, R.M.37
Basu, A.38
Baxendale, J.39
Bayraktaroglu, L.40
Beasley, E.M.41
Beeson, K.Y.42
Benos, P.V.43
Berman, B.P.44
Bhandari, D.45
Bolshakov, S.46
Borkova, D.47
Botchan, M.R.48
Bouck, J.49
Brokstein, P.50
Brottier, P.51
Burtis, K.C.52
Busam, D.A.53
Butler, H.54
Cadieu, E.55
Center, A.56
Chandra, I.57
Cherry, J.M.58
Cawley, S.59
Dahlke, C.60
Davenport, L.B.61
Davies, P.62
De Pablos, B.63
Delcher, A.64
Deng, Z.65
Mays, A.D.66
Dew, I.67
Dietz, S.M.68
Dodson, K.69
Doup, L.E.70
Downes, M.71
Dugan-Rocha, S.72
Dunkov, B.C.73
Dunn, P.74
Durbin, K.J.75
Evangelista, C.C.76
Ferraz, C.77
Ferriera, S.78
Fleischmann, W.79
Fosler, C.80
Gabrielian, A.E.81
Garg, N.S.82
Gelbart, W.M.83
Glasser, K.84
Glodek, A.85
Gong, F.86
Gorrell, J.H.87
Gu, Z.88
Guan, P.89
Harris, M.90
Harris, N.L.91
Harvey, D.92
Heiman, T.J.93
Hernandez, J.R.94
Houck, J.95
Hostin, D.96
Houston, K.A.97
Howland, T.J.98
Wei, M.-H.99
more..
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucl Acids Res 25 3389 3402 (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
33646932130
-
Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila
-
JR Arguello Y Chen S Yang W Wang M Long 2006 Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila PLoS Genet 2 e77
-
(2006)
PLoS Genet
, vol.2
, pp. 77
-
-
Arguello, J.R.1
Chen, Y.2
Yang, S.3
Wang, W.4
Long, M.5
-
4
-
-
45849086236
-
Origination of chimeric genes through DNA-level recombination
-
JR Arguello C Fan W Wang M Long 2007 Origination of chimeric genes through DNA-level recombination Genome Dyn 3 131 146
-
(2007)
Genome Dyn
, vol.3
, pp. 131-146
-
-
Arguello, J.R.1
Fan, C.2
Wang, W.3
Long, M.4
-
5
-
-
57049116528
-
Ectopic gene conversions in the human genome
-
D Benovoy G Drouin 2009 Ectopic gene conversions in the human genome Genomics 93 27 32
-
(2009)
Genomics
, vol.93
, pp. 27-32
-
-
Benovoy, D.1
Drouin, G.2
-
6
-
-
37249085295
-
Genome-scale analysis of positionally relocated genes
-
DOI 10.1101/gr.7062307
-
A Bhutkar SM Russo TF Smith WM Gelbart 2007 Genome-scale analysis of positionally relocated genes Genome Res 17 1880 1887 (Pubitemid 351360010)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1880-1887
-
-
Bhutkar, A.1
Russo, S.M.2
Smith, T.F.3
Gelbart, W.M.4
-
7
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
DOI 10.1006/jmbi.1997.0951
-
C Burge S Karlin 1997 Prediction of complete gene structures in human genomic DNA J Mol Biol 268 78 94 (Pubitemid 27192680)
-
(1997)
Journal of Molecular Biology
, vol.268
, Issue.1
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
8
-
-
34249067353
-
Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication
-
DOI 10.1534/genetics.106.066951
-
KP Byrne KH Wolfe 2007 Consistent patterns of rate asymmetry and gene loss indicate widespread neofunctionalization of yeast genes after whole-genome duplication Genetics 175 1341 1350 (Pubitemid 46798235)
-
(2007)
Genetics
, vol.175
, Issue.3
, pp. 1341-1350
-
-
Byrne, K.P.1
Wolfe, K.H.2
-
9
-
-
34249804498
-
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
-
DOI 10.1038/ng2049, PII NG2049
-
VR Chintapalli J Wang JAT Dow 2007 Using FlyAtlas to identify better Drosophila melanogaster models of human disease Nat Genet 39 715 720 (Pubitemid 46848596)
-
(2007)
Nature Genetics
, vol.39
, Issue.6
, pp. 715-720
-
-
Chintapalli, V.R.1
Wang, J.2
Dow, J.A.T.3
-
10
-
-
33845982198
-
Characterization of intron loss events in mammals
-
DOI 10.1101/gr.5703406
-
J Coulombe-Huntington J Majewski 2007 Characterization of intron loss events in mammals Genome Res 17 23 32 (Pubitemid 46041662)
-
(2007)
Genome Research
, vol.17
, Issue.1
, pp. 23-32
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
11
-
-
33847611887
-
Not born equal: Increased rate asymmetry in relocated and retrotransposed rodent gene duplicates
-
DOI 10.1093/molbev/msl199
-
BP Cusack KH Wolfe 2007 Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates Mol Biol Evol 24 679 686 (Pubitemid 46355795)
-
(2007)
Molecular Biology and Evolution
, vol.24
, Issue.3
, pp. 679-686
-
-
Cusack, B.P.1
Wolfe, K.H.2
-
13
-
-
38049150491
-
A portrait of copy-number polymorphism in Drosophila melanogaster
-
EB Dopman DL Hartl 2007 A portrait of copy-number polymorphism in Drosophila melanogaster Proc Natl Acad Sci USA 104 19920 19925
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 19920-19925
-
-
Dopman, E.B.1
Hartl, D.L.2
-
14
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Drosophila 12 Genomes Consortium
-
Drosophila 12 Genomes Consortium 2007 Evolution of genes and genomes on the Drosophila phylogeny Nature 450 203 218
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
-
15
-
-
0036017378
-
Characterization of the gene conversions between the multigene family members of the yeast genome
-
DOI 10.1007/s00239-001-0085-y
-
G Drouin 2002 Characterization of the gene conversions between the multigene family members of the yeast genome J Mol Evol 55 14 23 (Pubitemid 34634356)
-
(2002)
Journal of Molecular Evolution
, vol.55
, Issue.1
, pp. 14-23
-
-
Drouin, G.1
-
16
-
-
46249105777
-
Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster
-
DOI 10.1126/science.1158078
-
JJ Emerson M Cardoso-Moreira JO Borevitz M Long 2008 Natural selection shapes genome-wide patterns of copy-number polymorphism in Drosophila melanogaster Science 320 1629 1631 (Pubitemid 351931251)
-
(2008)
Science
, vol.320
, Issue.5883
, pp. 1629-1631
-
-
Emerson, J.J.1
Cardoso-Moreira, M.2
Borevitz, J.O.3
Long, M.4
-
17
-
-
0023649687
-
Pseudogenes in yeast?
-
GR Fink 1987 Pseudogenes in yeast? Cell 49 5 6
-
(1987)
Cell
, vol.49
, pp. 5-6
-
-
Fink, G.R.1
-
18
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
A Force M Lynch FB Pickett A Amores Y-l Yan J Postlethwait 1999 Preservation of duplicate genes by complementary, degenerative mutations Genetics 151 1531 1545 (Pubitemid 29177561)
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.-L.5
Postlethwait, J.6
-
19
-
-
0344237353
-
Mastering seeds for genomic size nucleotide BLAST searches
-
DOI 10.1093/nar/gkg886
-
V Gotea V Veeramachaneni W Makalowski 2003 Mastering seeds for genomic size nucleotide BLAST searches Nucl Acids Res 31 6935 6941 (Pubitemid 37508800)
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.23
, pp. 6935-6941
-
-
Gotea, V.1
Veeramachaneni, V.2
Makalowski, W.3
-
21
-
-
36048950933
-
Gene family evolution across 12 Drosophila genomes
-
MW Hahn MV Han S-G Han 2007 Gene family evolution across 12 Drosophila genomes PLoS Genet 3 e197
-
(2007)
PLoS Genet
, vol.3
, pp. 197
-
-
Hahn, M.W.1
Han, M.V.2
Han, S.-G.3
-
22
-
-
0036314772
-
Studying genomes through the aeons: Protein families, pseudogenes and proteome evolution
-
DOI 10.1016/S0022-2836(02)00109-2
-
PM Harrison M Gerstein 2002 Studying genomes through the aeons: protein families, pseudogenes and proteome evolution J Mol Biol 318 1155 1174 (Pubitemid 34753989)
-
(2002)
Journal of Molecular Biology
, vol.318
, Issue.5
, pp. 1155-1174
-
-
Harrison, P.M.1
Gerstein, M.2
-
24
-
-
15544389841
-
Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
-
DOI 10.1534/genetics.104.037051
-
X He J Zhang 2005 Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution Genetics 169 1157 1164 (Pubitemid 40404340)
-
(2005)
Genetics
, vol.169
, Issue.2
, pp. 1157-1164
-
-
He, X.1
Zhang, J.2
-
25
-
-
38549148421
-
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
-
DOI 10.1101/gr.6249707
-
A Heger CP Ponting 2007 Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes Genome Res 17 1837 1849 (Pubitemid 351360007)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1837-1849
-
-
Heger, A.1
Ponting, C.P.2
-
26
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
DOI 10.1098/rspb.1994.0058
-
AL Hughes 1994 The evolution of functionally novel proteins after gene duplication Proc R Soc Lond B Biol Sci 256 119 124 (Pubitemid 24168165)
-
(1994)
Proceedings of the Royal Society B: Biological Sciences
, vol.256
, Issue.1346
, pp. 119-124
-
-
Hughes, A.L.1
-
28
-
-
0346100700
-
The Structure and Early Evolution of Recently Arisen Gene Duplicates in the Caenorhabditis elegans Genome
-
V Katju M Lynch 2003 The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome Genetics 165 1793 1803 (Pubitemid 38040270)
-
(2003)
Genetics
, vol.165
, Issue.4
, pp. 1793-1803
-
-
Katju, V.1
Lynch, M.2
-
31
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
32
-
-
0034754553
-
Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster
-
BP Lazzaro AG Clark 2001 Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the attacin genes of Drosophila melanogaster Genetics 159 659 671 (Pubitemid 33035109)
-
(2001)
Genetics
, vol.159
, Issue.2
, pp. 659-671
-
-
Lazzaro, B.P.1
Clark, A.G.2
-
34
-
-
0027905006
-
Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila
-
M Long CH Langley 1993 Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila Science 260 91 95
-
(1993)
Science
, vol.260
, pp. 91-95
-
-
Long, M.1
Langley, C.H.2
-
35
-
-
0035980032
-
Gene duplication and evolution
-
M Long K Thornton 2001 Gene duplication and evolution Science 293 1551a
-
(2001)
Science
, vol.293
-
-
Long, M.1
Thornton, K.2
-
36
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
DOI 10.1038/nrg1204
-
M Long E Betran K Thornton W Wang 2003 The origin of new genes: glimpses from the young and old Nat Rev Genet 4 865 875 (Pubitemid 37345613)
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.11
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
37
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
DOI 10.1126/science.290.5494.1151
-
M Lynch JS Conery 2000 The evolutionary fate and consequences of duplicate genes Science 290 1151 1155 (Pubitemid 30840676)
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
38
-
-
4744343021
-
The altered evolutionary trajectories of gene duplicates
-
DOI 10.1016/j.tig.2004.09.001, PII S0168952504002501
-
M Lynch V Katju 2004 The altered evolutionary trajectories of gene duplicates Trends Genet 20 544 549 (Pubitemid 39314561)
-
(2004)
Trends in Genetics
, vol.20
, Issue.11
, pp. 544-549
-
-
Lynch, M.1
Katju, V.2
-
39
-
-
0035697435
-
The probability of preservation of a newly arisen gene duplicate
-
M Lynch M O'Hely B Walsh A Force 2001 The probability of preservation of a newly arisen gene duplicate Genetics 159 1789 1804 (Pubitemid 34087615)
-
(2001)
Genetics
, vol.159
, Issue.4
, pp. 1789-1804
-
-
Lynch, M.1
O'Hely, M.2
Walsh, B.3
Force, A.4
-
40
-
-
64749109737
-
Repeat mediated gene duplication in the Drosophila pseudoobscura genome
-
RP Meisel 2009 Repeat mediated gene duplication in the Drosophila pseudoobscura genome Gene 438 1 7
-
(2009)
Gene
, vol.438
, pp. 1-7
-
-
Meisel, R.P.1
-
41
-
-
14744269229
-
The evolutionary dynamics of plant duplicate genes
-
DOI 10.1016/j.pbi.2004.12.001, Genome Studies and Molecular Genetics / Plant Biotechnology
-
RC Moore MD Purugganan 2005 The evolutionary dynamics of plant duplicate genes Curr Opin Plant Biol 8 122 128 (Pubitemid 40323539)
-
(2005)
Current Opinion in Plant Biology
, vol.8
, Issue.2
, pp. 122-128
-
-
Moore, R.C.1
Purugganan, M.D.2
-
42
-
-
0002084648
-
Bearings of the 'Drosophila' work on systematics
-
Clarendon Press Oxford
-
Muller HJ (1940) Bearings of the 'Drosophila' work on systematics. In: Huxley J (ed) The new systematics. Clarendon Press, Oxford, pp 185-268
-
(1940)
The New Systematics
, pp. 185-268
-
-
Muller, H.J.1
Huxley, J.2
-
43
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
M Nei T Gojobori 1986 Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol Biol Evol 3 418 426 (Pubitemid 16010523)
-
(1986)
Molecular Biology and Evolution
, vol.3
, Issue.5
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
45
-
-
33645118577
-
A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex
-
M Nozawa T Aotsuka K Tamura 2005 A novel chimeric gene, siren, with retroposed promoter sequence in the Drosophila bipectinata complex Genetics 171 1719 1727
-
(2005)
Genetics
, vol.171
, pp. 1719-1727
-
-
Nozawa, M.1
Aotsuka, T.2
Tamura, K.3
-
47
-
-
58149157901
-
Duplication and gene conversion in the Drosophila melanogaster genome
-
N Osada H Innan 2008 Duplication and gene conversion in the Drosophila melanogaster genome PLoS Genet 4 e1000305
-
(2008)
PLoS Genet
, vol.4
, pp. 1000305
-
-
Osada, N.1
Innan, H.2
-
48
-
-
0038157152
-
Dosage sensitivity and the evolution of gene families in yeast
-
DOI 10.1038/nature01771
-
B Papp C Pal LD Hurst 2003 Dosage sensitivity and the evolution of gene families in yeast Nature 424 194 197 (Pubitemid 36858686)
-
(2003)
Nature
, vol.424
, Issue.6945
, pp. 194-197
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
49
-
-
0020486465
-
Gene conversion between repeated genes
-
TD Petes GR Fink 1982 Gene conversion between repeated genes Nature 300 216 217
-
(1982)
Nature
, vol.300
, pp. 216-217
-
-
Petes, T.D.1
Fink, G.R.2
-
50
-
-
0034064945
-
Pseudogene evolution and natural selection for a compact genome
-
D Petrov D Hartl 2000 Pseudogene evolution and natural selection for a compact genome J Hered 91 221 227 (Pubitemid 30314325)
-
(2000)
Journal of Heredity
, vol.91
, Issue.3
, pp. 221-227
-
-
Petrov, D.A.1
Hartl, D.L.2
-
51
-
-
0029099075
-
Interchromosomal exchange of genetic information between gene arrangements on the third chromosome of Drosophila pseudoobscura
-
A Popadic D Popadic W Anderson 1995 Interchromosomal exchange of genetic information between gene arrangements on the third chromosome of Drosophila pseudoobscura Mol Biol Evol 12 938 943
-
(1995)
Mol Biol Evol
, vol.12
, pp. 938-943
-
-
Popadic, A.1
Popadic, D.2
Anderson, W.3
-
52
-
-
0002069041
-
Inversion polymorphisms in Drosophila pseudoobscura and Drosophila persimilis
-
CRC Press Boca Raton
-
Powell JR (1992) Inversion polymorphisms in Drosophila pseudoobscura and Drosophila persimilis. In: Krimbas CB, Powell JR (eds) Drosophila inversion polymorphism. CRC Press, Boca Raton, pp 73-126
-
(1992)
Drosophila Inversion Polymorphism
, pp. 73-126
-
-
Powell, J.R.1
Krimbas, C.B.2
Powell, J.R.3
-
53
-
-
19944434180
-
Comparative genome sequencing of Drosophila pseudoobscura: Chromosomal, gene, and cis-element evolution
-
S Richards Y Liu BR Bettencourt P Hradecky S Letovsky R Nielsen K Thornton MJ Hubisz R Chen RP Meisel O Couronne S Hua MA Smith P Zhang J Liu HJ Bussemaker MF van Batenburg SL Howells SE Scherer E Sodergren BB Matthews MA Crosby AJ Schroeder D Ortiz-Barrientos CM Rives ML Metzker DM Muzny G Scott D Steffen DA Wheeler KC Worley P Havlak KJ Durbin A Egan R Gill J Hume MB Morgan G Miner C Hamilton Y Huang L Waldron D Verduzco KP Clerc-Blankenburg I Dubchak MAF Noor W Anderson KP White AG Clark SW Schaeffer W Gelbart GM Weinstock RA Gibbs 2005 Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution Genome Res 15 1 18
-
(2005)
Genome Res
, vol.15
, pp. 1-18
-
-
Richards, S.1
Liu, Y.2
Bettencourt, B.R.3
Hradecky, P.4
Letovsky, S.5
Nielsen, R.6
Thornton, K.7
Hubisz, M.J.8
Chen, R.9
Meisel, R.P.10
Couronne, O.11
Hua, S.12
Smith, M.A.13
Zhang, P.14
Liu, J.15
Bussemaker, H.J.16
Van Batenburg, M.F.17
Howells, S.L.18
Scherer, S.E.19
Sodergren, E.20
Matthews, B.B.21
Crosby, M.A.22
Schroeder, A.J.23
Ortiz-Barrientos, D.24
Rives, C.M.25
Metzker, M.L.26
Muzny, D.M.27
Scott, G.28
Steffen, D.29
Wheeler, D.A.30
Worley, K.C.31
Havlak, P.32
Durbin, K.J.33
Egan, A.34
Gill, R.35
Hume, J.36
Morgan, M.B.37
Miner, G.38
Hamilton, C.39
Huang, Y.40
Waldron, L.41
Verduzco, D.42
Clerc-Blankenburg, K.P.43
Dubchak, I.44
Noor, M.A.F.45
Anderson, W.46
White, K.P.47
Clark, A.G.48
Schaeffer, S.W.49
Gelbart, W.50
Weinstock, G.M.51
Gibbs, R.A.52
more..
-
54
-
-
0038153932
-
Evolutionary genomics of inversions in Drosophila pseudoobscura: Evidence for epistasis
-
DOI 10.1073/pnas.1432900100
-
SW Schaeffer MP Goetting-Minesky M Kovacevic JR Peoples JL Graybill JM Miller K Kim JG Nelson WW Anderson 2003 Evolutionary genomics of inversions in Drosophila pseudoobscura: evidence for epistasis Proc Natl Acad Sci USA 100 8319 8324 (Pubitemid 36842543)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.14
, pp. 8319-8324
-
-
Schaeffer, S.W.1
Goetting-Minesky, M.P.2
Kovacevic, M.3
Peoples, J.R.4
Graybill, J.L.5
Miller, J.M.6
Kim, K.7
Nelson, J.G.8
Anderson, W.W.9
-
55
-
-
52049125422
-
Polytene chromosomal maps of 11 Drosophila species: The order of genomic scaffolds inferred from genetic and physical maps
-
SW Schaeffer A Bhutkar BF McAllister M Matsuda LM Matzkin PM O'Grady C Rohde VLS Valente M Aguade WW Anderson K Edwards ACL Garcia J Goodman J Hartigan E Kataoka RT Lapoint ER Lozovsky CA Machado MAF Noor M Papaceit LK Reed S Richards TT Rieger SM Russo H Sato C Segarra DR Smith TF Smith V Strelets YN Tobari Y Tomimura M Wasserman T Watts R Wilson K Yoshida TA Markow WM Gelbart TC Kaufman 2008 Polytene chromosomal maps of 11 Drosophila species: the order of genomic scaffolds inferred from genetic and physical maps Genetics 179 1601 1655
-
(2008)
Genetics
, vol.179
, pp. 1601-1655
-
-
Schaeffer, S.W.1
Bhutkar, A.2
McAllister, B.F.3
Matsuda, M.4
Matzkin, L.M.5
O'Grady, P.M.6
Rohde, C.7
Valente, V.L.S.8
Aguade, M.9
Anderson, W.W.10
Edwards, K.11
Garcia, A.C.L.12
Goodman, J.13
Hartigan, J.14
Kataoka, E.15
Lapoint, R.T.16
Lozovsky, E.R.17
MacHado, C.A.18
Noor, M.A.F.19
Papaceit, M.20
Reed, L.K.21
Richards, S.22
Rieger, T.T.23
Russo, S.M.24
Sato, H.25
Segarra, C.26
Smith, D.R.27
Smith, T.F.28
Strelets, V.29
Tobari, Y.N.30
Tomimura, Y.31
Wasserman, M.32
Watts, T.33
Wilson, R.34
Yoshida, K.35
Markow, T.A.36
Gelbart, W.M.37
Kaufman, T.C.38
more..
-
56
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
DOI 10.1126/science.1098918
-
J Sebat B Lakshmi J Troge J Alexander J Young P Lundin S Maner H Massa M Walker M Chi N Navin R Lucito J Healy J Hicks K Ye A Reiner TC Gilliam B Trask N Patterson A Zetterberg M Wigler 2004 Large-scale copy number polymorphism in the human genome Science 305 525 528 (Pubitemid 38971344)
-
(2004)
Science
, vol.305
, Issue.5683
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
Healy, J.13
Hicks, J.14
Ye, K.15
Reiner, A.16
Gilliam, T.C.17
Trask, B.18
Patterson, N.19
Zetterberg, A.20
Wigler, M.21
more..
-
57
-
-
0032953158
-
Gene duplication and gene conversion in the Caenorhabditis elegans genome
-
DOI 10.1007/PL00006498
-
C Semple KH Wolfe 1999 Gene duplication and gene conversion in the Caenorhabditis elegans genome J Mol Evol 48 555 564 (Pubitemid 29211430)
-
(1999)
Journal of Molecular Evolution
, vol.48
, Issue.5
, pp. 555-564
-
-
Semple, C.1
Wolfe, K.H.2
-
58
-
-
4444363053
-
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
-
DOI 10.1016/j.tig.2004.07.008, PII S0168952504001933
-
C Seoighe C Gehring 2004 Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome Trends Genet 20 461 464 (Pubitemid 39201062)
-
(2004)
Trends in Genetics
, vol.20
, Issue.10
, pp. 461-464
-
-
Seoighe, C.1
Gehring, C.2
-
59
-
-
0030473920
-
Gen(om)e duplications in the evolution of early vertebrates
-
DOI 10.1016/S0959-437X(96)80026-8
-
A Sidow 1996 Gen(om)e duplications in the evolution of early vertebrates Curr Opin Genet Dev 6 715 722 (Pubitemid 27010631)
-
(1996)
Current Opinion in Genetics and Development
, vol.6
, Issue.6
, pp. 715-722
-
-
Sidow, A.1
-
60
-
-
0018952782
-
Human fetal (G)γ- and (A)γ-globin genes: Complete nucleotide sequences suggest that DNA can be exchanged between these duplicated genes
-
Aγ-globin genes: complete nucleotide sequences suggest that DNA can be exchanged between these duplicated genes Cell 21 627 638 (Pubitemid 10022871)
-
(1980)
Cell
, vol.21
, Issue.3
, pp. 627-638
-
-
Slightom, J.L.1
Blechl, A.E.2
Smithies, O.3
-
63
-
-
0027453388
-
Simple methods for testing the molecular evolutionary clock hypothesis
-
F Tajima 1993 Simple methods for testing the molecular evolutionary clock hypothesis Genetics 135 599 607 (Pubitemid 23307610)
-
(1993)
Genetics
, vol.135
, Issue.2
, pp. 599-607
-
-
Tajima, F.1
-
64
-
-
1942485886
-
The Effect of Gene Conversion on the Divergence between Duplicated Genes
-
DOI 10.1534/genetics.166.3.1553
-
KM Teshima H Innan 2004 The effect of gene conversion on the divergence between duplicated genes Genetics 166 1553 1560 (Pubitemid 38507068)
-
(2004)
Genetics
, vol.166
, Issue.3
, pp. 1553-1560
-
-
Teshima, K.M.1
Innan, H.2
-
65
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 22 4673 4680 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
66
-
-
12344256065
-
Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster
-
DOI 10.1093/molbev/msi015
-
K Thornton M Long 2005 Excess of amino acid substitutions relative to polymorphism between X-linked duplications in Drosophila melanogaster Mol Biol Evol 22 273 284 (Pubitemid 40130195)
-
(2005)
Molecular Biology and Evolution
, vol.22
, Issue.2
, pp. 273-284
-
-
Thornton, K.1
Long, M.2
-
67
-
-
52049084856
-
Genomic analysis of adaptive differentiation in Drosophila melanogaster
-
TL Turner MT Levine ML Eckert DJ Begun 2008 Genomic analysis of adaptive differentiation in Drosophila melanogaster Genetics 179 455 473
-
(2008)
Genetics
, vol.179
, pp. 455-473
-
-
Turner, T.L.1
Levine, M.T.2
Eckert, M.L.3
Begun, D.J.4
-
68
-
-
0034922711
-
Functional divergence in the caspase gene family and altered functional constraints: Statistical analysis and prediction
-
Y Wang X Gu 2001 Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction Genetics 158 1311 1320 (Pubitemid 32667113)
-
(2001)
Genetics
, vol.158
, Issue.3
, pp. 1311-1320
-
-
Wang, Y.1
Gu, X.2
-
69
-
-
38949119483
-
Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila
-
S Yang JR Arguello X Li Y Ding Q Zhou Y Chen Y Zhang R Zhao F Brunet L Peng M Long W Wang 2008 Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila PLoS Genet 4 e3
-
(2008)
PLoS Genet
, vol.4
, pp. 3
-
-
Yang, S.1
Arguello, J.R.2
Li, X.3
Ding, Y.4
Zhou, Q.5
Chen, Y.6
Zhang, Y.7
Zhao, R.8
Brunet, F.9
Peng, L.10
Long, M.11
Wang, W.12
-
70
-
-
0037500141
-
Evolution by gene duplication: An update
-
DOI 10.1016/S0169-5347(03)00033-8
-
J Zhang 2003 Evolution by gene duplication: an update Trends Ecol Evol 18 292 298 (Pubitemid 36631749)
-
(2003)
Trends in Ecology and Evolution
, vol.18
, Issue.6
, pp. 292-298
-
-
Zhang, J.1
-
72
-
-
36049041622
-
Constraint and turnover in sex-biased gene expression in the genus Drosophila
-
DOI 10.1038/nature06323, PII NATURE06323
-
Y Zhang D Sturgill M Parisi S Kumar B Oliver 2007 Constraint and turnover in sex-biased gene expression in the genus Drosophila Nature 450 233 237 (Pubitemid 350100545)
-
(2007)
Nature
, vol.450
, Issue.7167
, pp. 233-237
-
-
Zhang, Y.1
Sturgill, D.2
Parisi, M.3
Kumar, S.4
Oliver, B.5
-
73
-
-
50649097020
-
On the origin of new genes in Drosophila
-
Q Zhou G Zhang Y Zhang S Xu R Zhao Z Zhan X Li Y Ding S Yang W Wang 2008 On the origin of new genes in Drosophila Genome Res 18 1446 1455
-
(2008)
Genome Res
, vol.18
, pp. 1446-1455
-
-
Zhou, Q.1
Zhang, G.2
Zhang, Y.3
Xu, S.4
Zhao, R.5
Zhan, Z.6
Li, X.7
Ding, Y.8
Yang, S.9
Wang, W.10
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