-
1
-
-
0035107224
-
Regulatory mechanisms controlling expression of the DAN/TIR mannoprotein genes during anaerobic remodeling of the cell wall in Saccharomyces cerevisiae
-
Abramova, N.E., Cohen, B.D., Sertil, O., Kapoor, R., Davies, K.J., and Lowry, C.V. (2001). Regulatory mechanisms controlling expression of the DAN/TIR mannoprotein genes during anaerobic remodeling of the cell wall in Saccharomyces cerevisiae. Genetics 157, 1169-1177. (Pubitemid 32225010)
-
(2001)
Genetics
, vol.157
, Issue.3
, pp. 1169-1177
-
-
Abramova, N.E.1
Cohen, B.D.2
Sertil, O.3
Kapoor, R.4
Davies, K.J.A.5
Lowry, C.V.6
-
2
-
-
3142660192
-
SUT1-promoted sterol uptake involves the ABC transporter Aus1 and the mannoprotein Dan1 whose synergistic action is sufficient for this process
-
DOI 10.1042/BJ20040297
-
Alimardani, P., Regnacq, M., Moreau-Vauzelle, C., Ferreira, T., Rossignol, T., Blondin, B., et al. (2004). SUT1-promoted sterol uptake involves the ABC transporter Aus1 and the mannoprotein Dan1 whose synergistic action is sufficient for this process. Biochem J 381, 195-202. (Pubitemid 38932225)
-
(2004)
Biochemical Journal
, vol.381
, Issue.1
, pp. 195-202
-
-
Alimardani, P.1
Regnacq, M.2
Moreau-Vauzelle, C.3
Ferreira, T.4
Rossignol, T.5
Blondin, B.6
Berges, T.7
-
3
-
-
0002587184
-
Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium
-
Andreasen, A.A., and Stier, T.J. (1953). Anaerobic nutrition of Saccharomyces cerevisiae. I. Ergosterol requirement for growth in a defined medium. J Cell Physiol 41, 23-36.
-
(1953)
J Cell Physiol
, vol.41
, pp. 23-36
-
-
Andreasen, A.A.1
Stier, T.J.2
-
4
-
-
0036271384
-
The yeast transcriptome in aerobic and hypoxic conditions: Effects of hap1, rox1, rox3 and srb10 deletions
-
DOI 10.1046/j.1365-2958.2002.02724.x
-
Becerra, M., Lombardia-Ferreira, L.J., Hauser, N.C., Hoheisel, J.D., Tizon, B., and Cerdan, M.E. (2002). The yeast transcriptome in aerobic and hypoxic conditions: Effects of hap1, rox1, rox3 and srb10 deletions. Mol Microbiol 43, 545-555. (Pubitemid 34597252)
-
(2002)
Molecular Microbiology
, vol.43
, Issue.3
, pp. 545-555
-
-
Becerra, M.1
Lombardia-Ferreira, L.J.2
Hauser, N.C.3
Hoheisel, J.D.4
Tizon, B.5
Cerdan, M.E.6
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y., and Hochberg, Y. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Series B 57, 289-300.
-
(1995)
J R Stat Soc Series B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
0030979616
-
Met31p and Met32p, two related zinc finger proteins, are involved in transcriptional regulation of yeast sulfur amino acid metabolism
-
Blaiseau, P.L., Isnard, A.D., Surdin-Kerjan, Y., and Thomas, D. (1997). Met31p and Met32p, two related zinc finger proteins, are involved in transcriptional regulation of yeast sulfur amino acid metabolism. Mol Cell Biol 17, 3640-3648. (Pubitemid 27281839)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.7
, pp. 3640-3648
-
-
Blaiseau, P.-L.1
Isnard, A.-D.2
Surdin-Kerjan, Y.3
Thomas, D.4
-
7
-
-
0028837586
-
Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake
-
Bourot, S., and Karst, F. (1995). Isolation and characterization of the Saccharomyces cerevisiae SUT1 gene involved in sterol uptake. Gene 165, 97-102.
-
(1995)
Gene
, vol.165
, pp. 97-102
-
-
Bourot, S.1
Karst, F.2
-
8
-
-
58249142210
-
Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells
-
Bruckmann, A., Hensbergen, P.J., Balog, C.I., Deelder, A.M., Brandt, R., Snoek, I.S., et al. (2009). Proteome analysis of aerobically and anaerobically grown Saccharomyces cerevisiae cells. J Proteomics 71, 662-669.
-
(2009)
J Proteomics
, vol.71
, pp. 662-669
-
-
Bruckmann, A.1
Hensbergen, P.J.2
Balog, C.I.3
Deelder, A.M.4
Brandt, R.5
Snoek, I.S.6
-
9
-
-
54249139753
-
Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression
-
Chan, K., and Roth, M.B. (2008). Anoxia-induced suspended animation in budding yeast as an experimental paradigm for studying oxygen-regulated gene expression. Eukaryot Cell 10, 1795-1808
-
(2008)
Eukaryot Cell
, vol.10
, pp. 1795-1808
-
-
Chan, K.1
Roth, M.B.2
-
10
-
-
1542350073
-
Role of Transcriptional Regulation in Controlling Fluxes in Central Carbon Metabolism of Saccharomyces cerevisiae: A chemostat culture study
-
DOI 10.1074/jbc.M309578200
-
Daran-Lapujade, P., Jansen, M.L., Daran, J.M., Van Gulik, W., de Winde, J.H., and Pronk, J.T. (2004). Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study. J Biol Chem 279, 9125-9138. (Pubitemid 38304859)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.10
, pp. 9125-9138
-
-
Daran-Lapujade, P.1
Jansen, M.L.A.2
Daran, J.-M.3
Van Gulik, W.4
De Winde, J.H.5
Pronk, J.T.6
-
11
-
-
23944462967
-
Effects of a transition from normoxia to anoxia on yeast cytochrome c oxidase and the mitochondrial respiratory chain: Implications for hypoxic gene induction
-
DOI 10.1016/j.bbabio.2005.07.002, PII S0005272805001660
-
David, P.S., and Poyton, R.O. (2005). Effects of a transition from normoxia to anoxia on yeast cytochrome c oxidase and the mitochondrial respiratory chain: Implications for hypoxic gene induction. Biochim Biophys Acta 1709, 169-180. (Pubitemid 41207744)
-
(2005)
Biochimica et Biophysica Acta - Bioenergetics
, vol.1709
, Issue.2
, pp. 169-180
-
-
David, P.S.1
Poyton, R.O.2
-
12
-
-
36448932359
-
Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes
-
DOI 10.1099/mic.0.2007/009969-0
-
De Groot, M.J., Daran-Lapujade, P., Van Breukelen, B., Knijnenburg, T. A., De Hulster, E.A., Reinders, M.J., et al. (2007). Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology 153, 3864-3878. (Pubitemid 350168265)
-
(2007)
Microbiology
, vol.153
, Issue.11
, pp. 3864-3878
-
-
De Groot, M.J.L.1
Daran-Lapujade, P.2
Van Breukelen, B.3
Knijnenburg, T.A.4
De Hulster, E.A.F.5
Reinders, M.J.T.6
Pronk, J.T.7
Heck, A.J.R.8
Slijper, M.9
-
13
-
-
0037144396
-
Exposure of yeast cells to anoxia induces transient oxidative stress. Implications for the induction of hypoxic genes
-
Dirmeier, R., O'Brien, K.M., Engle, M., Dodd, A., Spears, E., and Poyton, R.O. (2002).Exposure of yeast cells to anoxia induces transient oxidative stress. Implications for the induction of hypoxic genes. J Biol Chem 277, 34773-34784.
-
(2002)
J Biol Chem
, vol.277
, pp. 34773-34784
-
-
Dirmeier, R.1
O'Brien, K.M.2
Engle, M.3
Dodd, A.4
Spears, E.5
Poyton, R.O.6
-
14
-
-
35348955882
-
A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types
-
DOI 10.1016/j.molcel.2007.09.027, PII S1097276507006661
-
Elemento, O., Slonim, N., and Tavazoie, S. (2007). A universal framework for regulatory element discovery across all genomes and data types. Mol Cell 28, 337-350. (Pubitemid 47600005)
-
(2007)
Molecular Cell
, vol.28
, Issue.2
, pp. 337-350
-
-
Elemento, O.1
Slonim, N.2
Tavazoie, S.3
-
15
-
-
0035157544
-
Genome-wide responses to mitochondrial dysfunction
-
Epstein, C.B., Waddle, J.A., Hale, W., 4th, Dave, V., Thornton, J., Macatee, T. L., et al. (2001). Genome-wide responses to mitochondrial dysfunction. Mol Biol Cell 12, 297-308. (Pubitemid 33051576)
-
(2001)
Molecular Biology of the Cell
, vol.12
, Issue.2
, pp. 297-308
-
-
Epstein, C.B.1
Waddle, J.A.2
Hale IV, W.3
Dave, V.4
Thornton, J.5
Macatee, T.L.6
Garner, H.R.7
Butow, R.A.8
-
16
-
-
33846689706
-
Using GOstats to test gene lists for GO term association
-
DOI 10.1093/bioinformatics/btl567
-
Falcon, S., and Gentleman, R. (2007). Using GOstats to test gene lists for GO term association. Bioinformatics 23, 257-258. (Pubitemid 46189622)
-
(2007)
Bioinformatics
, vol.23
, Issue.2
, pp. 257-258
-
-
Falcon, S.1
Gentleman, R.2
-
17
-
-
49049097132
-
Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design
-
Fazio, A., Jewett, M.C., Daran-Lapujade, P., Mustacchi, R., Usaite, R., Pronk, J.T., et al. (2008). Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design. BMC Genomics 9, 341.
-
(2008)
BMC Genomics
, vol.9
, pp. 341
-
-
Fazio, A.1
Jewett, M.C.2
Daran-Lapujade, P.3
Mustacchi, R.4
Usaite, R.5
Pronk, J.T.6
-
19
-
-
22544432531
-
Noise-robust soft clustering of gene expression time-course data
-
DOI 10.1142/S0219720005001375, PII S0219720005001375
-
Futschik, M.E., and Carlisle, B. (2005). Noise-robust soft clustering of gene expression time-course data. J Bioinform Comput Biol 3, 965-988. (Pubitemid 41015297)
-
(2005)
Journal of Bioinformatics and Computational Biology
, vol.3
, Issue.4
, pp. 965-988
-
-
Futschik, M.E.1
Carlisle, B.2
-
20
-
-
19344365947
-
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
-
Gerber, A.P., Herschlag, D., and Brown, P.O. (2004). Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol 2, E79.
-
(2004)
PLoS Biol
, vol.2
-
-
Gerber, A.P.1
Herschlag, D.2
Brown, P.O.3
-
21
-
-
0033119024
-
Functional analysis of the proteasome regulatory particle
-
Glickman, M.H., Rubin, D.M., Fu, H., Larsen, C.N., Coux, O., Wefes, I., et al. (1999). Functional analysis of the proteasome regulatory particle. Mol Biol Rep 26, 21-28. (Pubitemid 29223246)
-
(1999)
Molecular Biology Reports
, vol.26
, Issue.1-2
, pp. 21-28
-
-
Glickman, M.H.1
Rubin, D.M.2
Fu, H.3
Larsen, C.N.4
Coux, O.5
Wefes, I.6
Pfeifer, G.7
Cjeka, Z.8
Vierstra, R.9
Baumeister, W.10
Fried, V.11
Finley, D.12
-
22
-
-
0033624811
-
31P nuclear magnetic resonance study of Saccharomyces cerevisiae in glucose-limited chemostat culture during the aerobic-anaerobic shift
-
DOI 10.1002/(SICI)1097-0061(200004)16: 6<483::AID-YEA542>3.0.CO;2-E
-
Gonzalez, B., De Graaf, A., Renaud, M., and Sahm, H. (2000). Dynamic in vivo (31)P nuclear magnetic resonance study of Saccharomyces cerevisiae in glucose-limited chemostat culture during the aerobic-anaerobic shift. Yeast 16, 483-497. (Pubitemid 30201012)
-
(2000)
Yeast
, vol.16
, Issue.6
, pp. 483-497
-
-
Gonzalez, B.1
De Graaf, A.2
Renaud, M.3
Sahm, H.4
-
23
-
-
2942561052
-
Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
-
DOI 10.1128/MCB.24.12.5534-5547.2004
-
Grigull, J., Mnaimneh, S., Pootoolal, J., Robinson, M.D., and Hughes, T.R. (2004). Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol 24, 5534-5547. (Pubitemid 38738184)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.12
, pp. 5534-5547
-
-
Grigull, J.1
Mnaimneh, S.2
Pootoolal, J.3
Robinson, M.D.4
Hughes, T.R.5
-
24
-
-
0035955320
-
Regulatory functions of 30UTRs
-
Grzybowska, E.A., Wilczynska, A., and Siedlecki, J.A. (2001). Regulatory functions of 30UTRs. Biochem Biophys Res Commun 288, 291-295.
-
(2001)
Biochem Biophys Res Commun
, vol.288
, pp. 291-295
-
-
Grzybowska, E.A.1
Wilczynska, A.2
Siedlecki, J.A.3
-
25
-
-
34547911818
-
Mitochondrial complex III is required for hypoxia-induced ROS production and gene transcription in yeast
-
DOI 10.1089/ars.2007.1708
-
Guzy, R.D., Mack, M.M., and Schumacker, P.T. (2007). Mitochondrial complex III is required for hypoxia-induced ROS production and gene transcription in yeast. Antioxid Redox Signal 9, 1317-1328. (Pubitemid 47255011)
-
(2007)
Antioxidants and Redox Signaling
, vol.9
, Issue.9
, pp. 1317-1328
-
-
Guzy, R.D.1
Mack, M.M.2
Schumacker, P.T.3
-
26
-
-
0029872691
-
Mutations in target DNA elements of yeast HAP1 modulate its transcriptional activity without affecting DNA binding
-
DOI 10.1093/nar/24.8.1453
-
Ha, N., Hellauer, K., and Turcotte, B. (1996). Mutations in target DNA elements of yeast HAP1 modulate its transcriptional activity without affecting DNA binding. Nucleic Acids Res 24, 1453-1459. (Pubitemid 26118977)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.8
, pp. 1453-1459
-
-
Ha, N.1
Hellauer, K.2
Turcotte, B.3
-
27
-
-
0026787869
-
Stress-induced proteolysis in yeast
-
Hilt, W., and Wolf, D.H. (1992). Stress-induced proteolysis in yeast. Mol Microbiol 6, 2437-2442.
-
(1992)
Mol Microbiol
, vol.6
, pp. 2437-2442
-
-
Hilt, W.1
Wolf, D.H.2
-
28
-
-
0348010307
-
A mechanism of oxygen sensing in yeast: Multiple oxygen-responsive steps in the heme biosynthetic pathway affect Hap1 activity
-
DOI 10.1074/jbc.M303677200
-
Hon, T., Dodd, A., Dirmeier, R., Gorman, N., Sinclair, P.R., Zhang, L., and Poyton, R.O. (2003). A mechanism of oxygen sensing in yeast. Multiple oxygen-responsive steps in the heme biosynthetic pathway affect Hap1 activity. J Biol Chem 278, 50771-50780. (Pubitemid 37548926)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.50
, pp. 50771-50780
-
-
Hon, T.1
Dodd, A.2
Dirmeier, R.3
Gorman, N.4
Sinclair, P.R.5
Zhang, L.6
Poyton, R.O.7
-
29
-
-
0023478501
-
Heat-induced accumulation and futile cycling of trehalose in Saccharomyces cerevisiae
-
Hottiger, T., Schmutz, P., and Wiemken, A. (1987). Heat-induced accumulation and futile cycling of trehalose in Saccharomyces cerevisiae. J Bacteriol 169, 5518-5522.
-
(1987)
J Bacteriol
, vol.169
, pp. 5518-5522
-
-
Hottiger, T.1
Schmutz, P.2
Wiemken, A.3
-
30
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R.A., Hobbs, B., Collin, F., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U., and Speed, T.P. (2003).Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
31
-
-
34248354813
-
The yeast ubiquitin ligase SCFMet30: Connecting environmental and intracellular conditions to cell division
-
Kaiser, P., Su, N.Y., Yen, J.L., Ouni, I., and Flick, K. (2006). The yeast ubiquitin ligase SCFMet30: Connecting environmental and intracellular conditions to cell division. Cell Div 1, 16.
-
(2006)
Cell Div
, vol.1
, pp. 16
-
-
Kaiser, P.1
Su, N.Y.2
Yen, J.L.3
Ouni, I.4
Flick, K.5
-
32
-
-
0029944825
-
A heteromeric complex containing the centromere binding factor 1 and two basic leucine zipper factors, Met4 and Met28, mediates the transcription activation of yeast sulfur metabolism
-
Kuras, L., Cherest, H., Surdin-Kerjan, Y., and Thomas, D. (1996). A heteromeric complex containing the centromere binding factor 1 and two basic leucine zipper factors, Met4 and Met28, mediates the transcription activation of yeast sulfur metabolism. EMBO J 15, 2519-2529. (Pubitemid 26151191)
-
(1996)
EMBO Journal
, vol.15
, Issue.10
, pp. 2519-2529
-
-
Kuras, L.1
Cherest, H.2
Surdin-Kerjan, Y.3
Thomas, D.4
-
33
-
-
0032052761
-
Oxygen sensing and the transcriptional regulation of oxygen responsive genes in yeast
-
Kwast, K.E., Burke, P.V., and Poyton, R.O. (1998). Oxygen sensing and the transcriptional regulation of oxygenresponsive genes in yeast. J Exp Biol 201, 1177-1195. (Pubitemid 28278322)
-
(1998)
Journal of Experimental Biology
, vol.201
, Issue.8
, pp. 1177-1195
-
-
Kwast, K.E.1
Burke, P.V.2
Poyton, R.O.3
-
34
-
-
0033545977
-
Oxygen sensing in yeast: Evidence for the involvement of the respiratory chain in regulating the transcription of a subset of hypoxic genes
-
DOI 10.1073/pnas.96.10.5446
-
Kwast, K.E., Burke, P.V., Staahl, B.T., and Poyton, R.O. (1999). Oxygen sensing in yeast: Evidence for the involvement of the respiratory chain in regulating the transcription of a subset of hypoxic genes. Proc Natl Acad Sci USA 96, 5446-5451. (Pubitemid 29234637)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.10
, pp. 5446-5451
-
-
Kwast, K.E.1
Burke, P.V.2
Staahl, B.T.3
Poyton, R.O.4
-
35
-
-
0036135461
-
Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: Functional roles of Rox1 and other factors in mediating the anoxic response
-
DOI 10.1128/JB.184.1.250-265.2002
-
Kwast, K.E., Lai, L.C., Menda, N., James, D.T., 3rd, Aref, S., and Burke, P V. (2002). Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: Functional roles of Rox1 and other factors in mediating the anoxic response. J Bacteriol 184, 250-265. (Pubitemid 34003306)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.1
, pp. 250-265
-
-
Kwast, K.E.1
Lai, L.-C.2
Menda, N.3
James III, D.T.4
Aref, S.5
Burke, P.V.6
-
36
-
-
18144415477
-
Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media
-
DOI 10.1128/MCB.25.10.4075-4091.2005
-
Lai, L.C., Kosorukoff, A.L., Burke, P.V., and Kwast, K.E. (2005). Dynamical remodeling of the transcriptome during short-term anaerobiosis in Saccharomyces cerevisiae: Differential response and role of Msn2 and/or Msn4 and other factors in galactose and glucose media. Mol Cell Biol 25, 4075-4091. (Pubitemid 40617655)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.10
, pp. 4075-4091
-
-
Lai, L.-C.1
Kosorukoff, A.L.2
Burke, P.V.3
Kwast, K.E.4
-
37
-
-
33748852396
-
Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae
-
DOI 10.1128/EC.00107-06
-
Lai, L.C., Kosorukoff, A.L., Burke, P.V., and Kwast, K.E. (2006). Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae. Eukaryot Cell 5, 1468-1489. (Pubitemid 44423645)
-
(2006)
Eukaryotic Cell
, vol.5
, Issue.9
, pp. 1468-1489
-
-
Lai, L.-C.1
Kosorukoff, A.L.2
Burke, P.V.3
Kwast, K.E.4
-
38
-
-
60549090823
-
Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae
-
Lai, L.C., Kissinger, M.T., Burke, P.V., and Kwast, K.E. (2008). Comparison of the transcriptomic "stress response" evoked by antimycin A and oxygen deprivation in Saccharomyces cerevisiae. BMC Genomics 9, 627.
-
(2008)
BMC Genomics
, vol.9
, pp. 627
-
-
Lai, L.C.1
Kissinger, M.T.2
Burke, P.V.3
Kwast, K.E.4
-
39
-
-
61649096857
-
Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast
-
Lawless, C., Pearson, R.D., Selley, J.N., Smirnova, J.B., Grant, C.M., Ashe, M.P., et al. (2009). Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast. BMC Genomics 10, 7.
-
(2009)
BMC Genomics
, vol.10
, pp. 7
-
-
Lawless, C.1
Pearson, R.D.2
Selley, J.N.3
Smirnova, J.B.4
Grant, C.M.5
Ashe, M.P.6
-
40
-
-
0024028454
-
Pleiotropic mutations in Saccharomyces cerevisiae affecting sterol uptake and metabolism
-
Lewis, T.L., Keesler, G.A., Fenner, G.P., and Parks, L.W. (1988). Pleiotropic mutations in Saccharomyces cerevisiae affecting sterol uptake and metabolism. Yeast 4, 93-106.
-
(1988)
Yeast
, vol.4
, pp. 93-106
-
-
Lewis, T.L.1
Keesler, G.A.2
Fenner, G.P.3
Parks, L.W.4
-
41
-
-
39749140606
-
Strategy of transcription regulation in the budding yeast
-
Levy, S., Ihmels, J., Carmi, M., Weinberger, A., Friedlander, G., and Barkai, N. (2007). Strategy of transcription regulation in the budding yeast. PLoS One 2, e250.
-
(2007)
PLoS One
, vol.2
-
-
Levy, S.1
Ihmels, J.2
Carmi, M.3
Weinberger, A.4
Friedlander, G.5
Barkai, N.6
-
42
-
-
41449113782
-
Redox characteristics of the eukaryotic cytosol
-
Lopez-Mirabal, H.R., and Winther, J.R. (2008). Redox characteristics of the eukaryotic cytosol. Biochim Biophys Acta 1783, 629-640.
-
(2008)
Biochim Biophys Acta
, vol.1783
, pp. 629-640
-
-
Lopez-Mirabal, H.R.1
Winther, J.R.2
-
44
-
-
0030868697
-
Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family
-
Mai, B., and Breeden, L. (1997). Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/ Mbp1 family. Mol Cell Biol 17, 6491-6501. (Pubitemid 27451195)
-
(1997)
Molecular and Cellular Biology
, vol.17
, Issue.11
, pp. 6491-6501
-
-
Mai, B.1
Breeden, L.2
-
45
-
-
0033961808
-
CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast
-
DOI 10.1128/MCB.20.2.478-487.2000
-
Mai, B., and Breeden, L. (2000). CLN1 and its repression by Xbp1 are important for efficient sporulation in budding yeast. Mol Cell Biol 20, 478-487. (Pubitemid 30023089)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.2
, pp. 478-487
-
-
Mai, B.1
Breeden, L.2
-
46
-
-
0029879360
-
The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress-response element (STRE)
-
Martinez-Pastor, M.T., Marchler, G., Schuller, C., Marchler- Bauer, A., Ruis, H., and Estruch, F. (1996). The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J 15, 2227-2235. (Pubitemid 26141139)
-
(1996)
EMBO Journal
, vol.15
, Issue.9
, pp. 2227-2235
-
-
Martinez-Pastor, M.T.1
Marchler, G.2
Schuller, C.3
Marchler-Bauer, A.4
Ruis, H.5
Estruch, F.6
-
47
-
-
0034388021
-
The Puf3 protein is a transcriptspecific regulator of mRNA degradation in yeast
-
Olivas, W., and Parker, R. (2000). The Puf3 protein is a transcriptspecific regulator of mRNA degradation in yeast. EMBO J 19, 6602-6611.
-
(2000)
EMBO J
, vol.19
, pp. 6602-6611
-
-
Olivas, W.1
Parker, R.2
-
48
-
-
41049102359
-
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
-
Oliveira, A.P., Patil, K.R., and Nielsen, J. (2008). Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks. BMC Syst Biol 2, 17.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 17
-
-
Oliveira, A.P.1
Patil, K.R.2
Nielsen, J.3
-
49
-
-
0030878249
-
Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stress-induced recycling of glycogen and trehalose
-
Parrou, J.L., Teste, M.A., and Francois, J. (1997). Effects of various types of stress on the metabolism of reserve carbohydrates in Saccharomyces cerevisiae: Genetic evidence for a stressinduced recycling of glycogen and trehalose. Microbiology 143(Pt 6), 1891-1900. (Pubitemid 27290279)
-
(1997)
Microbiology
, vol.143
, Issue.6
, pp. 1891-1900
-
-
Parrou, J.L.1
Teste, M.-A.2
Francois, J.3
-
51
-
-
28444445926
-
-
R Development Core Team. Version 2.3.0. Vienna, Austria: R Foundation for Statistical Computing
-
R Development Core Team. (2005). R: A language and environment for statistical computing. Version 2.3.0. Vienna, Austria: R Foundation for Statistical Computing.
-
(2005)
R: A Language and Environment for Statistical Computing
-
-
-
52
-
-
33845935641
-
Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
-
Regenberg, B., Grotkjaer, T., Winther, O., Fausboll, A., Åkesson, M., Bro, C., et al. (2006). Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae. Genome Biol 7, R107.
-
(2006)
Genome Biol
, vol.7
-
-
Regenberg, B.1
Grotkjaer, T.2
Winther, O.3
Fausboll, A.4
Akesson, M.5
Bro, C.6
-
53
-
-
42549088130
-
Transcription of hexose transporters of Saccharomyces cerevisiae is affected by change in oxygen provision
-
Rintala, E., Wiebe, M.G., Tamminen, A., Ruohonen, L., and Penttilä, M. (2008). Transcription of hexose transporters of Saccharomyces cerevisiae is affected by change in oxygen provision. BMC Microbiol 8, 53.
-
(2008)
BMC Microbiol
, vol.8
, pp. 53
-
-
Rintala, E.1
Wiebe, M.G.2
Tamminen, A.3
Ruohonen, L.4
Penttilä, M.5
-
54
-
-
70449646314
-
Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae
-
Rintala, E., Toivari, M., Pitkänen, J.P., Wiebe, M.G., Ruohonen, L., and Penttilä, M. (2009). Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae. BMC Genomics 10, 461.
-
(2009)
BMC Genomics
, vol.10
, pp. 461
-
-
Rintala, E.1
Toivari, M.2
Pitkänen, J.P.3
Wiebe, M.G.4
Ruohonen, L.5
Penttilä, M.6
-
55
-
-
0023739386
-
Protein sorting in Saccharomyces cerevisiae: Isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases
-
Robinson, J.S., Klionsky, D.J., Banta, L.M., and Emr, S.D. (1988). Protein sorting in Saccharomyces cerevisiae: Isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases. Mol Cell Biol 8, 4936-4948. (Pubitemid 18261566)
-
(1988)
Molecular and Cellular Biology
, vol.8
, Issue.11
, pp. 4936-4948
-
-
Robinson, J.S.1
Klionsky, D.J.2
Banta, L.M.3
Emr, S.D.4
-
56
-
-
48449096068
-
Yeast mitochondrial biogenesis: A role for the PUF RNA-binding protein Puf3p in mRNA localization
-
Saint-Georges, Y., Garcia, M., Delaveau, T., Jourdren, L., Le Crom, S., Lemoine, S., et al. (2008). Yeast mitochondrial biogenesis: A role for the PUF RNA-binding protein Puf3p in mRNA localization. PLoS One 3, e2293.
-
(2008)
PLoS One
, vol.3
-
-
Saint-Georges, Y.1
Garcia, M.2
Delaveau, T.3
Jourdren, L.4
Le Crom, S.5
Lemoine, S.6
-
57
-
-
0035151828
-
Identification of a UPC2 homolog in Saccharomyces cerevisiae and its involvement in aerobic sterol uptake
-
DOI 10.1128/JB.183.3.830-834.2001
-
Shianna, K.V., Dotson, W.D., Tove, S., and Parks, L.W. (2001). Identification of a UPC2 homolog in Saccharomyces cerevisiae and its involvement in aerobic sterol uptake. J Bacteriol 183, 830-834. (Pubitemid 32095291)
-
(2001)
Journal of Bacteriology
, vol.183
, Issue.3
, pp. 830-834
-
-
Shianna, K.V.1
Dotson, W.D.2
Tove, S.3
Parks, L.W.4
-
58
-
-
0029833459
-
Transcriptional regulation by ergosterol in the yeast Saccharomyces cerevisiae
-
Smith, S.J., Crowley, J.H., and Parks, L.W. (1996). Transcriptional regulation by ergosterol in the yeast Saccharomyces cerevisiae. Mol Cell Biol 16, 5427-5432. (Pubitemid 26315062)
-
(1996)
Molecular and Cellular Biology
, vol.16
, Issue.10
, pp. 5427-5432
-
-
Smith, S.J.1
Crowley, J.H.2
Parks, L.W.3
-
59
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Article3
-
Smyth, G.K. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3, Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
61
-
-
33846986347
-
Factors involved in anaerobic growth of Saccharomyces cerevisiae
-
DOI 10.1002/yea.1430
-
Snoek, I., and Steensma, H. (2007). Factors involved in anaerobic growth of Saccharomyces cerevisiae. Yeast 24, 1-10. (Pubitemid 46242418)
-
(2007)
Yeast
, vol.24
, Issue.1
, pp. 1-10
-
-
Ishtar Snoek, I.S.1
Yde Steensma, H.2
-
62
-
-
0023427519
-
Purification and characterization of a heat-shock element binding protein from yeast
-
Sorger, P.K., and Pelham, H.R. (1987). Purification and characterization of a heat-shock element binding protein from yeast. EMBO J 6, 3035-3041.
-
(1987)
EMBO J
, vol.6
, pp. 3035-3041
-
-
Sorger, P.K.1
Pelham, H.R.2
-
63
-
-
0032762991
-
Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae
-
ter Linde, J.J., Liang, H., Davis, R.W., Steensma, H.Y., Van Dijken, J.P., and Pronk, J.T. (1999). Genome-wide transcriptional analysis of aerobic and anaerobic chemostat cultures of Saccharomyces cerevisiae. J Bacteriol 181, 7409-7413.
-
(1999)
J Bacteriol
, vol.181
, pp. 7409-7413
-
-
Ter Linde, J.J.1
Liang, H.2
Davis, R.W.3
Steensma, H.Y.4
Van Dijken, J.P.5
Pronk, J.T.6
-
64
-
-
0036317761
-
A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae
-
DOI 10.1002/yea.879
-
ter Linde, J.J., and Steensma, H.Y. (2002). A microarray-assisted screen for potential Hap1 and Rox1 target genes in Saccharomyces cerevisiae. Yeast 19, 825-840. (Pubitemid 34763939)
-
(2002)
Yeast
, vol.19
, Issue.10
, pp. 825-840
-
-
Ter Linde, J.J.M.1
Steensma, H.Y.2
-
65
-
-
0024356429
-
Elements involved in S-adenosylmethionine-mediated regulation of the Saccharomyces cerevisiae MET25 gene
-
Thomas, D., Cherest, H., and Surdin-Kerjan, Y. (1989). Elements involved in S-adenosylmethionine-mediated regulation of the Saccharomyces cerevisiaeMET25 gene.Mol Cell Biol 9, 3292-3298. (Pubitemid 19189616)
-
(1989)
Molecular and Cellular Biology
, vol.9
, Issue.8
, pp. 3292-3298
-
-
Thomas, D.1
Cherest, H.2
Surdin-Kerjan, Y.3
-
66
-
-
0026546494
-
MET4, a leucine zipper protein, and centromere-binding factor 1 are both required for transcriptional activation of sulfur metabolism in Saccharomyces cerevisiae
-
Thomas, D., Jacquemin, I., and Surdin-Kerjan, Y. (1992). MET4, a leucine zipper protein, and centromere-binding factor 1 are both required for transcriptional activation of sulfur metabolism in Saccharomyces cerevisiae. Mol Cell Biol 12, 1719-1727.
-
(1992)
Mol Cell Biol
, vol.12
, pp. 1719-1727
-
-
Thomas, D.1
Jacquemin, I.2
Surdin-Kerjan, Y.3
-
67
-
-
38649087012
-
Puf1p acts in combination with other yeast Puf proteins to control mRNA stability
-
DOI 10.1261/rna.847408
-
Ulbricht, R.J., and Olivas, W.M. (2008). Puf1p acts in combination with other yeast Puf proteins to control mRNA stability. RNA 14, 246-262. (Pubitemid 351171586)
-
(2008)
RNA
, vol.14
, Issue.2
, pp. 246-262
-
-
Ulbricht, R.J.1
Olivas, W.M.2
-
68
-
-
0026710123
-
Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation
-
Verduyn, C., Postma, E., Scheffers, W.A., and Van Dijken, J.P. (1992). Effect of benzoic acid on metabolic fluxes in yeasts: A continuous-culture study on the regulation of respiration and alcoholic fermentation. Yeast 8, 501-517.
-
(1992)
Yeast
, vol.8
, pp. 501-517
-
-
Verduyn, C.1
Postma, E.2
Scheffers, W.A.3
Van Dijken, J.P.4
-
69
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
DOI 10.1073/pnas.092538799
-
Wang, Y., Liu, C.L., Storey, J.D., Tibshirani, R.J., Herschlag, D., and Brown, P.O. (2002). Precision and functional specificity in mRNA decay. Proc Natl Acad Sci USA 99, 5860-5865. (Pubitemid 34493230)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
71
-
-
9444297882
-
When the stress of your environment makes you go HOG wild
-
DOI 10.1126/science.1104879
-
Westfall, P.J., Ballon, D.R., and Thorner, J. (2004). When the stress of your environment makes you go HOG wild. Science 306, 1511-1512. (Pubitemid 39564938)
-
(2004)
Science
, vol.306
, Issue.5701
, pp. 1511-1512
-
-
Westfall, P.J.1
Ballon, D.R.2
Thorner, J.3
-
72
-
-
38349121328
-
Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions
-
Wiebe, M.G., Rintala, E., Tamminen, A., Simolin, H., Salusjärvi, L., Toivari, M., et al. (2008). Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions. FEMS Yeast Res. 8, 140-154.
-
(2008)
FEMS Yeast Res.
, vol.8
, pp. 140-154
-
-
Wiebe, M.G.1
Rintala, E.2
Tamminen, A.3
Simolin, H.4
Salusjärvi, L.5
Toivari, M.6
-
73
-
-
0035813453
-
Multiple stable states and hysteresis in continuous, oscillating cultures of budding yeast
-
DOI 10.1002/bit.10038
-
Zamamiri, A.Q., Birol, G., and Hjortso, M.A. (2001). Multiple stable states and hysteresis in continuous, oscillating cultures of budding yeast. Biotechnol Bioeng 75, 305-312. (Pubitemid 33000724)
-
(2001)
Biotechnology and Bioengineering
, vol.75
, Issue.3
, pp. 305-312
-
-
Zamamiri, A.-Q.M.1
Birol, G.2
Hjortso, M.A.3
-
74
-
-
60749127330
-
Glucose regulates transcription in yeast through a network of signaling pathways
-
Zaman, S., Lippman, S.I., Schneper, L., Slonim, N., and Broach, J.R. (2009). Glucose regulates transcription in yeast through a network of signaling pathways. Mol Syst Biol 5, 245.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 245
-
-
Zaman, S.1
Lippman, S.I.2
Schneper, L.3
Slonim, N.4
Broach, J.R.5
-
75
-
-
66849111399
-
Gis1 is required for transcriptional reprogramming of carbon metabolism and the stress response during transition into stationary phase in yeast
-
Zhang, N., Wu, J., and Oliver, S.G. (2009). Gis1 is required for transcriptional reprogramming of carbon metabolism and the stress response during transition into stationary phase in yeast. Microbiology 155, 1690-1698.
-
(2009)
Microbiology
, vol.155
, pp. 1690-1698
-
-
Zhang, N.1
Wu, J.2
Oliver, S.G.3
|